HHsearch 1.5 NAME c2gy9N_ FAM FILE c2gy9N_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2gy9N_.a3m DATE Fri Mar 12 00:35:19 2010 LENG 61 match states, 61 columns in multiple alignment FILT 85 out of 89 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.5078 3.4820 SEQ >ss_dssp CTTTCGGGSSSCSSSCGGGCCCCCSSSCCCSSEETTTTEEHHHHHHHHHHTCSTTCCCCCC >sa_dssp EEEDCDCEDEECEEDDEEDEEDCBEEDCCDECCDEEDCBADDCCEDBCEEEDBEEDEEEEE >ss_pred CHHHHHHHHHCCCCCCHHHHCCCEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCEEECCC >ss_conf 9479999984861017554101010048875330314510999999997399987010359 >Consensus RxxaxlkLxxlprxssxtrixnRCxxTgRxRgvxrxfxlsRixfRxxaxxGxlpGvxKasW >c2gy9N_ RWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW >UniRef50_A4ZHB1(39-99:99) Ribosomal protein S14 n=4 Tax=Oomycetes RepID=A4ZHB1_9STRA E=0.0001 s/c=0.78 id=39% cov=102% RWKLQQKWFFFHQNSSITRIKNLCVLTGRSKSIYRLFKISRINLRKLASKGFLPGVSKYSW >UniRef50_Q9AIF4(36-95:95) 30S ribosomal protein S14 n=2 Tax=Candidatus Carsonella ruddii RepID=RS14_CARRU E=0.001 s/c=0.74 id=33% cov=100% -FNLLLKIQSIKKKKLKTKFINRCYISGRTRSFYNRFSLNRNLIRKIGNFGYITGIEKSSW >UniRef50_C4QLK5(121-178:213) Mitochondrial 28S ribosomal protein S14 (S14mt), putative n=2 Tax=Schistosoma RepID=C4QLK5_SCHMA E=6e-07 s/c=0.96 id=36% cov=97% ---ATLYISSLPRDSNWTRILSRCIVTSRRRGCKTRWKVSRIIWRKYADYNRMSGVLWARW >UniRef50_Q9G8Q0(53-98:98) Ribosomal protein S14 n=1 Tax=Naegleria gruberi RepID=Q9G8Q0_NAEGR E=0.0001 s/c=1.04 id=30% cov=77% ---------------SYSKIKNFCVLSYRRRGVFSYFKLTRMMFKFYALNKQLVGMIKSSW >UniRef50_Q6C892(51-102:105) YALI0D21626p n=1 Tax=Yarrowia lipolytica RepID=Q6C892_YARLI E=4e-06 s/c=1.02 id=34% cov=87% RIQAHLQLTSMPVFSNIHAAKPRCVETGRSKGIIKEFKLCRVSTTEAKTKGL--------- >UniRef50_Q9HF53(54-114:114) 40S ribosomal protein MRP2, mitochondrial n=12 Tax=Saccharomycetales RepID=RT02_ASHGO E=2e-14 s/c=1.32 id=39% cov=102% RMEAQLQLAVMPNYTRMTQVRNRCIATGHARSVITDFRLCRTQFREKAKNGELPGVKKGVW >UniRef50_A8XXB7(203-263:263) Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8XXB7_CAEBR E=3e-10 s/c=1.09 id=34% cov=102% RDEAAEKMQKARRYDHPRLILNMCQFTGRQRGKIKPYRLSRHLFRRFADRSALSGVQRAMW >UniRef50_Q9TAI7(39-99:99) Ribosomal protein S14 n=1 Tax=Cafeteria roenbergensis RepID=Q9TAI7_CAFRO E=7e-09 s/c=1.01 id=34% cov=102% RHKIFLHLTQKQKWASLNRVKNRCLVTQRSRGVFRLTKTSRLTFRKLATQGLLPGIRLATW >UniRef50_P46761(39-96:99) Ribosomal protein S14, mitochondrial n=1 Tax=Acanthamoeba castellanii RepID=RT14_ACACA E=5e-08 s/c=1.02 id=29% cov=97% RQKAFMYINKLDKNTSYVAIKQRCFLSNNGRSVLNHFKLSRIKLRLLISNNYVNGVKK--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 2554 * * * * * 269 * * * * * 1 0 * * * * * * 3914 0 0 W 2 3921 * 3999 * 2784 * 4043 4476 5239 2697 3560 * * 5028 6042 * 4772 5926 2413 3865 2 0 * * * * * * 4081 0 0 N 3 3922 * 4096 2105 * * 5543 * 2069 4993 * 2918 * 3182 5277 6007 6245 * 4185 * 3 0 * * * * * * 4081 0 0 A 4 659 * * * * * * 3442 * 3430 4677 * * * * 4395 * 4969 5165 4815 4 39 * 5234 * * * * 4236 0 0 V 5 3327 * 5706 * 4000 * 3033 3307 5530 4757 4841 * * 1714 3666 4538 4315 5308 * * 5 0 * * * * * 0 4200 0 1000 L 6 5991 5173 6106 3215 * 4684 * 3709 4587 1170 4144 4727 * 4591 4965 * * 4407 * 5801 6 0 * * * * 0 * 4200 0 1000 K 7 4739 * 5966 2622 * 5522 5049 * 1021 6414 * * * 2865 4628 * * * * 4328 7 0 * * * * * * 4157 0 0 L 8 * * * * * 5567 * 2431 5619 519 4198 * * * * * * * 5584 * 8 12 6864 * 0 * * * 4159 1000 0 Q 9 2884 * 4618 5987 5617 5941 5128 * 4479 6640 * 2729 * 2173 6056 2436 3497 * * 5218 9 0 * * * * * * 4180 0 0 T 10 2841 * 5421 4044 5646 6395 * * 2114 * * 3269 * 2945 4679 2403 4781 5999 * * 10 14 6664 * 0 * * * 4174 1000 0 L 11 5198 6447 * * 4074 * * 4088 5207 535 3646 * 6136 * * * 5644 6388 * * 11 46 5783 6237 0 * * * 4174 1000 0 P 12 6043 * 5652 5875 * 5781 4105 * 3852 * * * 527 5206 5174 4902 5623 * * * 12 0 * * * * * 0 4173 0 1000 R 13 4743 * * * * 5820 * * 2209 5065 * 4831 * 5015 930 * 6185 3694 5898 * 13 0 * * * * 0 * 4184 0 1000 D 14 * * 2259 5828 5252 5175 * * 3646 * * 1355 * 4469 5684 4946 5759 * 5212 3236 14 0 * * * * * * 4244 0 0 S 15 3425 * 5304 * 5667 3956 * * 5225 * 5660 * * 4946 * 775 3032 * * 6379 15 32 * 5531 * * * * 4244 0 0 S 16 3163 4370 * 6333 * * 4722 6303 * 5211 * 2928 * * 3483 964 5932 * * * 16 0 * * * * 1000 1000 4285 0 1480 P 17 5829 * * * 4982 * * 3388 2894 2609 4678 7011 1520 6345 4600 5674 6229 * 5413 4278 17 0 * * * * 0 * 4236 0 1000 S 18 4300 * 6336 * * 6156 5465 5013 * * 6306 3443 6714 * 4235 2792 1218 2968 * * 18 0 * * * * * * 4220 0 0 R 19 3790 * * * * 6353 * * 2704 4332 * * * 3278 715 * * * * * 19 0 * * * * * * 4220 0 0 Q 20 4602 * * 6580 3835 7010 7260 1285 * 2916 5933 6846 * 5308 6071 6799 6454 2491 * 4116 20 0 * * * * * * 4149 0 0 R 21 * * * * * * 2969 5432 2046 4476 * 5135 * 4123 1789 * 4817 3172 * 4633 21 0 * * * * * * 4149 0 0 N 22 6382 * * 6305 * 6309 3583 * * * * 674 4780 5260 3503 4897 3870 * * * 22 0 * * * * * * 4149 0 0 R 23 * * * * 5335 * 5945 5362 5614 4706 5639 * * * 280 * * * * 4964 23 0 * * * * * * 4149 0 0 C 24 * 45 5030 * * * * * * * * * * * * * * * * * 24 0 * * * * * * 4149 0 0 R 25 4800 * * 4994 4004 7041 * 2995 4729 3859 5819 6819 5092 3532 4855 4724 5731 1545 5002 5432 25 0 * * * * * * 4149 0 0 Q 26 4323 * 5851 3953 3908 * 6354 2754 5945 1678 5100 * * 4441 4934 4925 * 2578 * 7958 26 0 * * * * * * 4149 0 0 T 27 * 3491 5030 * * 5612 * * * * * * * * * 2440 565 * * * 27 0 * * * * * * 4149 0 0 G 28 * * 5385 * * 482 * * * * * 3490 * 5430 * 3020 * * * 5335 28 0 * * * * * * 4149 0 0 R 29 5243 * * * * * 5133 6355 5963 * * 5788 * * 174 * 6359 * * * 29 0 * * * * * * 4149 0 0 P 30 2916 * * * 5599 3395 * * 4541 * * * 1481 5639 3717 2227 4612 * * * 30 13 * 6824 * * * * 4149 0 0 H 31 5243 * * * * * 3010 * 3201 * * * * * 468 * * * * 5830 31 0 * * * * 0 * 4150 0 1000 G 32 2355 5904 * * 5851 916 * * 5251 * * * * * * 2355 * 5739 * * 32 0 * * * * * * 4149 0 0 F 33 * 4916 * * 3548 * * 3172 4428 6819 * 4062 * * * 5739 4370 1140 * 2897 33 0 * * * * * * 4149 0 0 L 34 * * * * 2800 * 4873 3016 4965 3125 5030 5251 * * * 5819 6597 2876 * 1595 34 0 * * * * * * 4149 0 0 R 35 * * * 5134 * 4011 6305 5186 3178 6382 * 3721 6533 6668 923 3524 4794 * * * 35 0 * * * * * * 4149 0 0 K 36 4909 * 2637 4699 3285 * 5788 5251 2001 3292 * * 4577 4643 2694 * * * * 4957 36 0 * * * * * * 4149 0 0 F 37 6641 5848 * * 577 * * * * 4818 * * * * * * 5429 5818 3150 3141 37 38 5250 * 0 * * * 4147 1000 0 G 38 * * * * * 1467 5241 * 1932 * * 5980 * * 1687 5430 * * * * 38 0 * * * * * * 4147 0 0 L 39 * * * * 5250 * * 2289 * 788 3772 * * * * * 5429 3415 * * 39 0 * * * * * * 4147 0 0 S 40 4993 2422 * * * 4813 5241 * * * * 4820 * * * 639 4556 * * * 40 0 * * * * * * 4147 0 0 R 41 * * * * * 4815 * * * * * * * * 52 * * * * * 41 0 * * * * * * 4147 0 0 I 42 6680 * * * 4136 * 3058 1210 * 2885 4425 3967 * 5241 * * 5678 4855 * 4198 42 0 * * * * * * 4147 0 0 K 43 5468 3832 * * 5591 * 5712 2865 2840 4286 3061 4554 6732 3321 4413 3933 5429 3072 6291 * 43 0 * * * * * * 4147 0 0 V 44 * * * * 1023 * * 3963 * 1619 6439 * * * * * 5709 4673 4371 * 44 0 * * * * * * 4147 0 0 R 45 * * * * * * * * 4823 4136 * * * * 188 * 5060 * * * 45 0 * * * * * * 4143 0 0 E 46 * * 3791 1551 5332 6535 3492 * 2832 5179 6344 5295 * 3386 3241 5706 6350 6778 * 6146 46 0 * * * * * * 4143 0 0 A 47 4847 * * * 3421 * 6817 5430 4024 1172 2978 5835 * 4549 5868 * 5900 6753 6330 3443 47 0 * * * * * * 4143 0 0 A 48 659 7084 * * * 3966 * 5037 5706 4397 3948 * * * * * * 2903 * * 48 0 * * * * * * 4143 0 0 M 49 4682 * 2542 6146 6005 6817 3226 5900 4182 2842 4369 3690 * 5349 4461 2852 4190 * * 4523 49 0 * * * * * * 4143 0 0 R 50 3315 7160 * 4618 3816 * 4880 6912 2595 5138 4810 2903 * 3440 3424 3914 * 5979 6778 3342 50 0 * * * * * * 4143 0 0 G 51 * 4811 * * * 419 5737 * 5332 * * 2903 * * * 5636 * 5710 * * 51 0 * * * * * * 4143 0 0 E 52 4555 * 4570 3367 5060 * * * 3081 1847 5710 4905 6790 2678 5325 4878 * 4617 * 3742 52 0 * * * * * * 4143 0 0 I 53 * * * * 4503 * * 1827 * 975 4140 * * 6307 * * * 3381 * * 53 0 * * * * * * 4105 0 0 P 54 4317 * * 6621 * * * * * 5881 5158 5740 707 5069 * 2611 5419 4428 * * 54 0 * * * * * * 4105 0 0 G 55 * * * * * 0 * * * * * * * * * * * * * * 55 0 * * * * * * 4105 0 0 L 56 4801 * * * 4262 5962 * 2805 * 2922 4466 * * * * * 6241 907 * 5098 56 0 * * * * * * 4105 0 0 K 57 6747 * * 5419 6784 * 6269 3970 1627 5313 * * * 2934 2807 4998 2567 4090 * * 57 0 * * * * * * 4105 0 0 K 58 * * * * * * * * 467 5427 * * 5605 * 2267 * * * 5316 * 58 0 * * * * * * 4118 0 0 A 59 891 * * * * 4075 * * * * * * * * 5358 1456 * * * 6315 59 0 * * * * * * 4097 0 0 S 60 * 5889 * 5641 * * * 3961 * * 3643 4645 * 6115 5302 631 5412 3835 * * 60 0 * * * * * * 4097 0 0 W 61 * * * * * * * * * * * * * * * * * * 35 5400 61 0 * * 0 * * * 4127 0 0 //