HHsearch 1.5 NAME c2gl2B_ FAM FILE c2gl2B_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2gl2B_.a3m DATE Tue Mar 9 09:35:24 2010 LENG 109 match states, 109 columns in multiple alignment FILT 106 out of 201 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.4631 -1.1855 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHTTCC >sa_dssp EEEDEDEEEEEEDEEDEECEEDDDDBDDCDDDADEBDECBDEBDEDCDECCDDAEECDEDEEEDDEDAEDCDEDBEECCEDADEBDCCBDEBDEDDEECD DEEEEEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHCC >ss_conf 9118999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999975239 >Consensus xxxxxxxxxxlexEYxxixxxxeplxxelxqlxexxxxxxaqLxexxxxLxxlxxxLxxlkxqyxexxxexqxlxxelexxxkklexaixxxexLxxEre xxxxxxxxx >c2gl2B_ AASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEASQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRA GNLEHHHHH >UniRef50_B2IVT3(236-331:1152) Methyltransferase type 11 n=2 Tax=Bacteria RepID=B2IVT3_NOSP7 E=0.0002 s/c=0.49 id=15% cov=88% ----------IEGEYAAMSEGFSKLLEESEQLKSQLHSTQAELDQAQAQLQENQLQLEQSQSHLQQTQTELERSQSHLQQTQTELERSQSHLQQTQTELE RSQSH---- >UniRef50_Q4MZ42(168-260:1228) Putative uncharacterized protein n=1 Tax=Theileria parva RepID=Q4MZ42_THEPA E=0.0008 s/c=0.48 id=16% cov=50% -----------------------------------------QIKEMSKKLETLPQEIERVKNQRDELLDQVRELKNELNPPYKSWQRSIEDSQSV----- --------- >UniRef50_C5DKL6(3219-3319:4108) KLTH0F05720p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DKL6_LACTC E=5e-12 s/c=0.71 id=16% cov=62% -------------EYSTILNTISPLKNDVAKIEKEMLQTKARLLASEDMISDYRDLMESSKREYSNIIRETEAIKAELSA-------------------- --------- >UniRef50_A9VCH3(2791-2878:3975) Predicted protein n=8 Tax=Eukaryota RepID=A9VCH3_MONBE E=3e-11 s/c=0.79 id=15% cov=67% --------------YDRVAKVVAPKKAKLAEAEAELAVQMAKLEEKRAELKAVTDKLQALKDELAAMVKKKEELAFNIDLCAKKLE-------------- --------- >UniRef50_B3L1Z2(3693-3784:5137) Dynein heavy chain, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L1Z2_PLAKH E=2e-07 s/c=0.62 id=9% cov=29% ---------------------------------------------LENKVKELTESVEKLRTKMNEVNEEKNKIIK------------------------ --------- >UniRef50_A8Y5B7(1780-1884:2691) Male fertility factor kl3 (Fragment) n=46 Tax=root RepID=A8Y5B7_DROME E=6e-07 s/c=0.53 id=19% cov=29% -------------------------------------------------LQQKENELAEVQQTLEDAVSKKDAVLDEAKK-------------------- --------- >UniRef50_B0WG78(2965-3060:4154) Cytoplasmic dynein heavy chain n=1 Tax=Culex quinquefasciatus RepID=B0WG78_CULQU E=7e-06 s/c=0.54 id=10% cov=36% ---------------------------EQTELRENLEKAESEMKSLSSGLDNVNGKVKELSEQLN----------------------------------- --------- >UniRef50_B0W369(318-421:1008) B-box type zinc-finger protein ncl-1 n=1 Tax=Culex quinquefasciatus RepID=B0W369_CULQU E=5e-13 s/c=0.72 id=17% cov=95% ---LIGEHKGKEHNYQIISEAEKPMRLELEQLMKEART---KIEYCNQTTTNLDASLHDLQNQFETARDLINESFQSFKAVLEKCrDNALKNLEKLHSER ELKIMEMFHQ >UniRef50_D2V0F9(3210-3301:4421) Axonemal dynein heavy chain beta n=1 Tax=Naegleria gruberi RepID=D2V0F9_NAEGR E=4e-05 s/c=0.53 id=19% cov=28% ---------------------------------------------VRKTVAKLNKQLKKIEGDYQAAEDEKNAAL------------------------- --------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 539 * * * * * * * * * * * * * * * 1682 * * * 1 0 * * * * * * 2000 0 0 A 2 423 * * * * * * * * * * * * * * 1975 * * * * 2 0 * * * * * * 2356 0 0 S 3 * * 2579 3151 * 2737 * * * * * 2777 * * * 1754 2971 * * * 3 0 * * * * * * 3444 0 0 L 4 * * * * 3721 * * 3329 * 867 * * * * * * * 1855 * * 4 0 * * * * * * 4399 0 0 V 5 3142 * 3348 2424 * * * 1550 * 3374 * * * * * * * 2607 * * 5 0 * * * * * * 4399 0 0 G 6 * * * * * 1779 * * 2159 * * * * 3123 * 1434 * * * * 6 0 * * * * * * 4399 0 0 E 7 * * * 1454 * * * * 3623 * * * * 2419 2118 3723 4038 * * * 7 0 * * * * * * 5240 0 0 L 8 * * * * 2264 * 2743 2858 * 2347 2418 * * * * * * * * 3051 8 0 * * * * * * 5490 0 0 Q 9 * * 3152 3803 * * * * 2031 * * 3536 * 1501 * 2925 * * * * 9 0 * * * * * * 5490 0 0 A 10 1635 * * * * 3203 * * 4122 * * * * 1646 4057 4575 4828 * 4177 * 10 0 * * * * * * 5931 0 0 L 11 * * 4001 * * * * 2551 3931 512 * * * * * * * * * * 11 0 * * * * * * 6021 0 0 D 12 * * 3486 882 * * * * 4001 * * 3366 * 2660 * 4310 * * * * 12 0 * * * * * * 6021 0 0 A 13 1082 * 4158 * * 4123 3181 * 3378 4566 * 4372 * 3091 * * * * * * 13 158 * 3272 * * * * 6242 0 0 E 14 * * * 496 * * * * 3293 * * 3164 * 4724 4655 * * * * * 14 55 4731 * 1000 1000 0 * 6768 1000 1696 Y 15 * * * * 5118 * 5139 * * 3049 * * * 4628 * * * 4980 * 415 15 0 * * * * * * 7122 0 0 Q 16 3642 * 2581 3617 * 5624 4462 * 3167 5127 5125 4376 * 2751 5130 3061 3445 * * * 16 0 * * * * * * 7122 0 0 N 17 2959 * 3234 3462 5299 * * 4852 3497 4204 4321 4212 * 3596 2931 4970 3038 * * * 17 0 * * * * * * 7122 0 0 L 18 5094 * * * * * * 1594 * 1527 3782 * * 4652 * * 4779 2800 * * 18 0 * * * * * * 7170 0 0 A 19 2740 * * 3488 * 4779 * * 3795 1965 4485 * * 5161 5067 3169 4733 3702 * 3866 19 0 * * * * * * 7170 0 0 N 20 3226 * 3987 2465 * 4779 5064 * 2088 5340 * 3225 * 2856 3686 * * * * * 20 0 * * * * * * 7170 0 0 Q 21 4244 * 5692 2019 * 4903 * 4204 1771 * 4365 * * 4291 3775 * 4004 3937 * * 21 0 * * * * * * 7170 0 0 E 22 4652 * 5067 2125 4903 * * 2237 * 2957 * 5030 * * * 4779 5146 2110 * * 22 0 * * * * * * 7170 0 0 E 23 3824 5288 3379 1186 * * * 5584 3210 * * 4245 * 3986 * 3017 * * * * 23 0 * * * * * * 7188 0 0 A 24 3120 * 4894 2384 * * * * 3356 * * * 1031 3783 * * * * * * 24 0 * * * * * * 7188 0 0 R 25 * * * 4411 * * * * 1923 1184 4078 * * 5048 2646 * * * * * 25 0 * * * * * * 7198 0 0 F 26 * * * 3509 3262 * * * 3384 4937 4096 * * 4562 1384 * 3607 5174 * 3543 26 38 5253 * 2807 222 * * 7198 1000 0 N 27 2907 * 3182 3088 * 4281 * * 3709 5013 * 2234 5231 2168 * * * 5787 * * 27 0 * * * * * * 7383 0 0 E 28 4634 * 4936 1555 * * * * 1964 4577 * 5684 * 2672 4122 4195 * * * * 28 0 * * * * * * 7566 0 0 E 29 4983 * * 2568 * * * 4263 4322 1334 * 4428 * 5552 4579 5509 * 2561 * * 29 0 * * * * * * 7625 0 0 R 30 3994 * 5983 2077 * * 4742 * 2057 * * 5544 * 2922 2449 4358 5552 * * * 30 0 * * * * * * 7625 0 0 A 31 2643 * 5230 2826 * * * * 2279 5423 * * * 1660 6060 4044 5333 5931 * 6667 31 32 5527 * 2000 415 * * 7675 1000 0 Q 32 2104 * * 4441 * * * 2812 4680 1339 5477 4667 * 4834 5235 * * * * 5562 32 0 * * * * * * 7675 0 0 A 33 2276 * 5887 2052 * * * 5340 3497 5146 5468 * * 3429 4264 4345 3200 3869 * * 33 0 * * * * * * 7681 0 0 D 34 3683 * 2904 1304 * * * 5916 2926 * * 6069 * 4376 4569 3547 5369 5620 * * 34 0 * * * * * * 7834 0 0 A 35 3440 * 3992 1624 * * 5683 * 3913 5583 * 3292 * 3731 4554 4243 2968 6242 * * 35 0 * * * * * * 7948 0 0 A 36 2051 5550 * * 6225 5271 5736 4384 3501 1934 5417 6695 * 3981 5582 4849 5492 3490 * 5784 36 0 * * * * * * 7928 0 0 R 37 2718 * 3460 2763 * 6271 5086 * 2388 4735 * 3905 * 2994 2969 5718 * * * * 37 0 * * * * * * 8030 0 0 Q 38 2641 * 3390 2510 * * * 3838 2293 * * 4742 * 3030 5111 4217 5095 5447 * * 38 29 * 5674 * * * * 8028 0 0 A 39 1729 * * 4791 * 5695 6056 * 2631 3167 6103 4311 * 5083 * 4288 2365 6009 * * 39 0 * * * * * 0 7925 0 1000 L 40 4901 * 6171 3069 * * * 6336 3433 2316 3273 4436 * 2429 3091 4641 5957 5730 * * 40 0 * * * * * 0 7920 0 1000 A 41 1334 * 4432 3436 * 5012 * 5679 3254 6027 6392 3932 * 3290 5360 3975 5239 * * * 41 26 5831 * 0 * 0 * 7911 1000 1000 Q 42 4082 * 5774 2137 * * * 6144 2358 5477 * 5125 * 1764 4562 5190 5288 4465 * * 42 0 * * * * * * 8062 0 0 N 43 4163 * * 5497 7814 * 4731 3909 3962 868 4387 6017 * 4092 6367 * * 5164 * 4670 43 0 * * * * * * 8062 0 0 E 44 3012 * 3254 2352 * 5768 * 5179 2356 5088 * 4484 * 3618 3046 * 4554 6056 * * 44 0 * * * * * * 8216 0 0 Q 45 3023 * 4507 1315 * * 6101 4910 3939 6621 * 4352 * 3581 3946 4574 * 4753 * 4995 45 0 * * * * * * 8213 0 0 V 46 2685 5813 * 4265 * * 6080 3350 2631 2234 4514 5310 * 4759 6138 5171 3663 4347 * 6405 46 0 * * * * * * 8232 0 0 Y 47 5581 6418 5161 2304 * * * * 2384 6680 4856 3742 * 2508 3376 4386 5646 4744 * 4347 47 0 * * * * * * 8231 0 0 N 48 2851 * 2514 2779 * * * 5965 2770 * * 3184 * 3267 4665 3648 5512 5438 * * 48 0 * * * * * * 8211 0 0 E 49 4972 * 4264 2045 * 5175 * 4607 2300 6061 4272 4974 * 2594 4960 4745 4047 6990 * * 49 9 7277 * 0 * * * 8244 1000 0 L 50 * 5694 * * * * * 2394 5081 844 * * * * * * 4893 2554 * * 50 0 * * * * * * 8239 0 0 S 51 2255 6508 3405 2633 * 6960 * * 3897 5819 6697 4905 * 2540 4037 3673 4531 6063 * 5754 51 0 * * * * * * 8239 0 0 Q 52 3264 * 3567 1754 * 5498 6810 4420 3065 5483 * 4913 * 3873 5367 4492 3594 5380 * 5754 52 14 * 6665 * * * * 8239 0 0 R 53 3991 * * * * * * 3281 3513 1563 4805 5973 * 6053 4226 6214 6228 2031 * 5913 53 20 6183 * 2585 263 * 0 8238 1000 1000 A 54 4606 * 3722 1736 6791 5629 * 4168 4539 4102 4757 3680 6364 2642 4351 * 4597 5706 * * 54 22 6017 * 2585 263 * 0 8238 1000 1000 Q 55 2059 * 3262 3202 * 3923 * 6576 2951 5973 * 4358 * 3427 3844 3624 5551 6429 * * 55 0 * * * * 0 * 8238 0 1000 R 56 4639 * * 2671 * 4987 5897 6489 1817 5384 * 4147 * 3755 3044 3670 4782 5059 * 4682 56 0 * * * * * * 8157 0 0 L 57 * * * * 6331 * * 2212 * 1035 3993 * * 5779 * * 5982 2538 * 6093 57 73 4333 * 2585 263 * * 8170 2344 0 Q 58 2712 * 3964 2455 * 4856 4982 * 3096 6214 * 4811 * 2632 3367 4305 5147 5518 * 6655 58 20 6183 * 2585 263 * * 8167 1000 0 A 59 2616 * 4228 2827 4673 4105 6372 4387 3350 6173 * 4734 * 3020 4440 3989 4431 5112 * 5144 59 0 * * * * * * 8167 0 0 E 60 4253 * * 4907 3535 * * 4296 * 1099 4309 * * * * 3999 5688 5095 * 2750 60 0 * * * * * * 8167 0 0 A 61 6390 * 5688 3334 * 4453 * 5778 1743 * 5856 4113 * 2278 3347 4089 4358 6973 * 6397 61 0 * * * * * * 8167 0 0 S 62 2725 * 2915 2658 * 6636 4687 5152 3692 6236 6638 3206 * 4422 3682 3242 4949 6791 * * 62 0 * * * * * * 8167 0 0 Q 63 6994 * 3791 1865 * 5374 5926 6756 2868 5146 * 3752 * 1908 5326 5660 4818 6710 * * 63 0 * * * * * * 8167 0 0 Y 64 * 5445 * 6003 2780 * 6298 * * 2272 3755 6582 * 5877 4639 6928 5305 * * 1248 64 0 * * * * * * 8114 0 0 Q 65 3124 * 2729 2389 * 5464 6503 * 4233 * 6172 3108 * 2579 4062 3941 5741 5993 * * 65 0 * * * * * * 8070 0 0 E 66 2895 * 4090 1619 * 4834 * 6226 4874 6239 * 3406 6246 2724 5307 3978 5318 6274 * * 66 0 * * * * * * 8052 0 0 L 67 2303 * * 6673 * 6300 * 5820 3899 1633 4517 5094 * 3655 * 3243 4095 4284 * * 67 0 * * * * * * 8025 0 0 A 68 3486 5492 5558 5073 * * * 3088 4307 2937 3377 3912 * 3961 4731 4973 3039 3049 * * 68 0 * * * * * * 8031 0 0 S 69 3462 * 3296 3856 * 4859 * * 1774 6106 * 2894 * 3985 3573 3381 5691 * * * 69 0 * * * * * * 8031 0 0 K 70 6610 * 4746 1271 * * * 6409 2537 5008 * 4548 * 2526 4533 5863 5228 5661 * * 70 0 * * * * * * 8031 0 0 Y 71 3300 5188 * * 6291 * * 3590 1947 3651 * * * 3574 4355 5300 3857 4454 * 2614 71 0 * * * * * * 8112 0 0 E 72 4045 * 4257 1724 * 4607 * * 3125 * 6727 3783 * 1757 6154 5674 5872 * * * 72 0 * * * * * * 8112 0 0 D 73 3025 * 2569 2540 * 5341 * 5413 3672 6375 * 4588 * 3757 3350 3430 3911 5314 * * 73 0 * * * * * * 8070 0 0 A 74 4548 * * 5959 5310 5798 * 2493 5575 1076 * * * 5026 * 4092 4757 4015 * 4764 74 0 * * * * * * 7933 0 0 L 75 4719 * * 2863 5354 * * 4343 2144 2336 6385 4985 * 3667 3005 4462 5519 6311 * * 75 0 * * * * * * 7776 0 0 K 76 3205 * 2912 3989 6436 4662 5746 * 2267 * * 3952 * 3483 3574 2801 6532 5276 * * 76 0 * * * * * * 7761 0 0 K 77 5034 * 3017 1291 * 6896 5439 * 2886 * * 5213 * 2828 5006 4242 5738 * * * 77 0 * * * * * * 7751 0 0 L 78 2911 * * 5833 5303 * 6064 3427 5851 1337 3682 * * * 5824 6539 * 2854 * 4098 78 24 * 5906 * * * * 7751 0 0 E 79 6064 * 2200 1245 * * * * 3824 * * 3240 * 3646 * 3837 5701 * * * 79 0 * * * * * 0 7763 0 1000 A 80 2353 * 4550 2633 * 6120 * 5881 3416 3956 4351 5991 5422 5025 2810 4343 3519 6261 * * 80 0 * * * * * 0 7891 0 1000 E 81 3847 3506 4510 2808 * * * * 3466 4310 5237 5611 5309 3453 * 3223 2977 3093 * * 81 0 * * * * 0 * 7763 0 1000 M 82 5602 5136 * 2683 * * * 3295 3983 4833 3393 * * 2299 3240 4192 3669 4925 * 5346 82 0 * * * * * * 7795 0 0 E 83 3915 * 5171 2826 * * * * 1762 5552 * 3321 * 3283 2775 3823 5094 * * * 83 0 * * * * * * 7795 0 0 Q 84 * * 4859 2665 * * * * 1688 * * 3498 * 3384 2830 3498 4387 4789 * * 84 35 5376 * 2000 415 * * 7731 1000 0 Q 85 5337 4801 * 4789 * * * 3379 4337 1435 3134 4319 * 3264 5041 * * 3962 5310 * 85 55 4744 * 0 * * * 7731 1000 0 K 86 4397 * 3819 1425 * * 5265 * 4683 * * 4289 * 2066 4454 3516 * 5559 * * 86 0 * * * * * * 7701 0 0 A 87 3064 * 4945 3091 * * * * 2723 * * 3708 * 4560 1567 4416 5380 4269 * * 87 0 * * * * * * 7541 0 0 V 88 1547 * * * * * * 2871 3733 * * * * 4908 * 1999 5164 2893 * * 88 0 * * * * * * 7155 0 0 I 89 4646 * * 2475 * * * 1338 4810 3711 * 3661 * 4643 4930 4983 * 3488 * * 89 0 * * * * * * 7155 0 0 S 90 3374 * 3040 3229 4507 3973 * 4969 3258 * * 2827 * 4003 4902 2363 * * * * 90 0 * * * * * * 7155 0 0 D 91 * 4557 2872 4507 4775 * 4643 4646 4899 1266 * 2398 * * 5545 * * * * * 91 0 * * * * * * 7155 0 0 F 92 * * * * 1716 5001 * 2476 * 2557 3693 4646 * * * 4785 4018 4133 * 4557 92 0 * * * * * * 7155 0 0 E 93 4042 * 3411 1409 * * * * 3076 4775 * 4507 * 2647 3722 4875 * * * * 93 0 * * * * * * 7155 0 0 K 94 3985 * * * * 4058 * * 1578 * 5100 2978 * 2266 * 2709 5317 * * * 94 0 * * * * * * 7155 0 0 I 95 * * * * 4795 * * 2420 * 515 * * * * * * 4624 4772 * * 95 0 * * * * * * 7138 0 0 Q 96 4724 * * 3152 * * 4328 * 2330 * 4532 3283 * 1884 4619 2802 * * * * 96 0 * * * * * * 6548 0 0 A 97 2281 * 3099 * * 2649 * 5134 4566 3752 4287 * * 4639 * 2116 4292 * * * 97 0 * * * * * * 6527 0 0 L 98 4797 * * 445 * * * 4566 * 2665 * * * * * * * 5085 * * 98 0 * * * * * * 6527 0 0 R 99 * * * * * * 4499 * 1617 4234 * * * 4574 1030 * * 4479 * * 99 0 * * * * * * 6353 0 0 A 100 3000 * 3187 500 * * * * * * * * * 4101 * * * * * * 100 0 * * * * * * 5713 0 0 G 101 2454 * * * * 1206 * * * 2346 * * * * 2417 * * * * * 101 0 * * * * * * 3437 0 0 N 102 * * * * * * * * 2211 * * 800 * * * 2253 * * * * 102 0 * * * * * * 3267 0 0 L 103 * * * * * * * 1980 2000 2015 * * * 2005 * * * * * * 103 0 * * * * * * 2960 0 0 E 104 * * * 2015 * * * * 2000 * 1980 * * * * 2005 * * * * 104 0 * * * * * * 2960 0 0 H 105 * * * 1980 * * 1010 * * 2000 * * * * * * * * * * 105 0 * * * * * * 2960 0 0 H 106 * * * * * * 601 * * * 1553 * * * * * * * * * 106 0 * * * * * * 2396 0 0 H 107 * * * * 1041 * 960 * * * * * * * * * * * * * 107 0 * * * * * * 1743 0 0 H 108 * * * * * * 0 * * * * * * * * * * * * * 108 0 * * * * * * 1743 0 0 H 109 * * * * * * 960 * * * * * * 1041 * * * * * * 109 0 * * 0 * * * 1743 0 0 //