HHsearch 1.5 NAME c2fqhA_ FAM FILE c2fqhA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2fqhA_.a3m DATE Wed Mar 10 18:31:57 2010 LENG 109 match states, 109 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.3659 -2.5578 SEQ >ss_dssp CCCEEEECSSSCCCSGGGSCSSCCCSCCCSSCBCTTCCBSSSCCSSSSCTTSCTHHHHHHHHHHHSCCCEECCCTTTCSCCEEEECCCCCTTCSSCCCCC HHHHHTTTC >sa_dssp ECCBCABBBDEBDECEBCABDEEEEDEBDEDCBCBBCAACCDDDECBCDEEBDECBDEBDEBBEEEDDCDCDDCEEBDECECEACADDCEEEDEEECEAC DECBEDDEE >ss_pred CCEEEEEEECCCCCCCCCCCCHHCCCHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEEEECCCC EEEEEECCC >ss_conf 9538999925203763235101044366778640786367540666999999999998630101221799953003572587623880689999962996 046897059 >Consensus xxxxxixvngrxagtkxxGCALCgaTWGeYyxeixGEklFFCCdiCAxxfxnmlxevkxxTgwxxiDxLxixGNYxxGRtxxxkxGxxxxkfYvkfxxxa xixxfkxxx >c2fqhA_ MSEVNIVVNGREAGSKSKGCALCGATWGDYHADFLGEDLFFCCDICAAEFMNMMDEAFKHTARHNVDELHIDGNYQLGRNVLLKNGEDRLRFYVKFGPGA VIKEFKITD >UniRef50_Q4J6Q4(1-103:106) Conserved Archaeal protein n=12 Tax=Archaea RepID=Q4J6Q4_SULAC E=2e-25 s/c=1.14 id=52% cov=95% ---MKITVNGRTAGTKETGCALCGGTWGDYYEEIDGEKLFFCCDICALEFVNMLREVKKRTGWDRIDELVINGNYSSGRTCVSKRGGREYKFYVRFNEDA GVETFR--- >UniRef50_UPI00003C84CF(6-97:97) hypothetical protein Faci_09663 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI00003C84CF E=4e-14 s/c=0.86 id=38% cov=84% ----------------TEGCALCNATWGEYYREIEGEKMFFCCNICADILEGMLNKVKDETGWNKIDYLELHGNYSSGRTCTAKSGNEEFKYYYRtYGDG RVMEYKKL-- >UniRef50_A8MCC5(1-102:105) Putative uncharacterized protein n=2 Tax=Thermoprotei RepID=A8MCC5_CALMQ E=2e-38 s/c=1.57 id=47% cov=94% ---MIIEVNGRQVGTKETGCALCGATWGEYYDEVDGEKLFFCCDLCAKGFKNIINEIKRRTGWSRIDKLTMVGNYYKGRTGVAMHGNEQFKFYVKFNDDA DITIF---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1000 0 0 E 3 * * * 0 * * * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 V 4 * * * * * * * * * * 632 * * * * * * 1496 * * 4 0 * * * * * * 1608 0 0 N 5 * * * * * * * 1599 1665 * * 1496 * * * * * * * * 5 0 * * * * * * 1608 0 0 I 6 * * * * * * * 0 * * * * * * * * * * * * 6 0 * * * * * * 1608 0 0 V 7 * * * 1599 * * * * * * * * * * * * 1665 1496 * * 7 0 * * * * * * 1608 0 0 V 8 * * * * * * * * * * * * * * * * * 0 * * 8 0 * * * * * * 1608 0 0 N 9 * * * * * * * * * * * 0 * * * * * * * * 9 0 * * * * * * 1608 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 1608 0 0 R 11 * * * * * * * * * * * * * * 0 * * * * * 11 0 * * * * * * 1608 0 0 E 12 * * * 1496 * * * * * * * * * 1599 * * 1665 * * * 12 0 * * * * * * 1608 0 0 A 13 578 * * * * * * * * * * * * * * * * 1599 * * 13 0 * * * * * * 1608 0 0 G 14 * * * * * 0 * * * * * * * * * * * * * * 14 0 * * * * * * 1608 0 0 S 15 * * * * * * * * * * * * * * * 1496 632 * * * 15 0 * * * * * * 1608 0 0 K 16 * * * * * * * * 0 * * * * * * * * * * * 16 0 * * * * * * 1608 0 0 S 17 * * * 1118 * * * * * * * * * * * 1866 1916 * * * 17 0 * * * * * * 1852 0 0 K 18 * * * 1916 * * * * 1866 * * * * * * * 1118 * * * 18 0 * * * * * * 1852 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 1852 0 0 C 20 * 0 * * * * * * * * * * * * * * * * * * 20 0 * * * * * * 1852 0 0 A 21 0 * * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1852 0 0 L 22 * * * * * * * * * 0 * * * * * * * * * * 22 0 * * * * * * 1852 0 0 C 23 * 0 * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 1852 0 0 G 24 * * * * * 444 * * * * * 1916 * * * * * * * * 24 0 * * * * * * 1852 0 0 A 25 362 * * * * 2172 * * * * * * * * * * * * * * 25 0 * * * * * * 1852 0 0 T 26 * * * * * * * * * * * * * * * * 0 * * * 26 0 * * * * * * 1852 0 0 W 27 * * * * * * * * * * * * * * * * * * 0 * 27 0 * * * * * * 1852 0 0 G 28 * * * * * 0 * * * * * * * * * * * * * * 28 0 * * * * * * 1852 0 0 D 29 * * 1011 989 * * * * * * * * * * * * * * * * 29 0 * * * * * * 1852 0 0 Y 30 * * * * * * * * * * * * * * * * * * * 0 30 0 * * * * * * 1852 0 0 H 31 * * * * * * 1866 * * * * * * * * * * * * 463 31 0 * * * * * * 1852 0 0 A 32 1866 * 2066 2172 * * * * * * * * * * 1916 * * * * * 32 0 * * * * * * 1852 0 0 D 33 * * 1866 463 * * * * * * * * * * * * * * * * 33 0 * * * * * * 1852 0 0 F 34 * * * * 1866 * * 1038 * * * * * * * * * 2066 * * 34 0 * * * * * * 1852 0 0 L 35 * * 1118 1916 * * * * * 1866 * * * * * * * * * * 35 0 * * * * * * 1852 0 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 1852 0 0 E 37 * * * 0 * * * * * * * * * * * * * * * * 37 0 * * * * * * 1852 0 0 D 38 * * 1866 * * * * * 463 * * * * * * * * * * * 38 0 * * * * * * 1852 0 0 L 39 * * * * * * * * * 444 1916 * * * * * * * * * 39 0 * * * * * * 1852 0 0 F 40 * * * * 0 * * * * * * * * * * * * * * * 40 0 * * * * * * 1852 0 0 F 41 * * * * 0 * * * * * * * * * * * * * * * 41 0 * * * * * * 1852 0 0 C 42 * 0 * * * * * * * * * * * * * * * * * * 42 0 * * * * * * 1852 0 0 C 43 * 0 * * * * * * * * * * * * * * * * * * 43 0 * * * * * * 1852 0 0 D 44 * * 444 * * * * * * * * 1916 * * * * * * * * 44 0 * * * * * * 1852 0 0 I 45 * * * * * * * 394 * 2066 * * * * * * * * * * 45 0 * * * * * * 1852 0 0 C 46 * 0 * * * * * * * * * * * * * * * * * * 46 0 * * * * * * 1852 0 0 A 47 0 * * * * * * * * * * * * * * * * * * * 47 0 * * * * * * 1852 0 0 A 48 1866 * 1916 * * * * * 2066 2172 * * * * * * * * * * 48 0 * * * * * * 1852 0 0 E 49 * * * 1011 * 2066 * 1916 * * * * * * * * * * * * 49 0 * * * * * * 1852 0 0 F 50 * * * * 444 * * * * 1916 * * * * * * * * * * 50 0 * * * * * * 1852 0 0 M 51 * * * 1916 * * * * 2066 * 1866 * * * * * * 2172 * * 51 0 * * * * * * 1852 0 0 N 52 * * * * * 1916 * * * * * 444 * * * * * * * * 52 0 * * * * * * 1852 0 0 M 53 * * * * * * * 2066 * * 394 * * * * * * * * * 53 0 * * * * * * 1852 0 0 M 54 * * * * * * * 2066 * 1038 1866 * * * * * * * * * 54 0 * * * * * * 1852 0 0 D 55 * * 1866 * * * * * * * * 989 * * 2172 * * * * * 55 0 * * * * * * 1852 0 0 E 56 * * * 444 * * * * 1916 * * * * * * * * * * * 56 0 * * * * * * 1852 0 0 A 57 1866 * * * * * * 2066 * * * * * * * * * 1038 * * 57 0 * * * * * * 1852 0 0 F 58 * * * * 1866 * * * 463 * * * * * * * * * * * 58 0 * * * * * * 1852 0 0 K 59 * * 1916 * * * * * 1011 * * * * * 2066 * * * * * 59 0 * * * * * * 1852 0 0 H 60 * * * 1916 * * 1866 * * * * * * * 1118 * * * * * 60 0 * * * * * * 1852 0 0 T 61 * * * * * * * * * * * * * * * * 0 * * * 61 0 * * * * * * 1852 0 0 A 62 1866 * * * * 463 * * * * * * * * * * * * * * 62 0 * * * * * * 1852 0 0 R 63 * * * * * * * * * * * * * * 1866 * * * 463 * 63 0 * * * * * * 1852 0 0 H 64 * * 2172 * * * 1866 * * * * 1916 * * * 2066 * * * * 64 0 * * * * * * 1852 0 0 N 65 * * * * * * * * 1916 * * 1866 * * 1118 * * * * * 65 0 * * * * * * 1852 0 0 V 66 * * * * * * * 463 * * * * * * * * * 1866 * * 66 0 * * * * * * 1852 0 0 D 67 * * 0 * * * * * * * * * * * * * * * * * 67 0 * * * * * * 1852 0 0 E 68 * * * 1011 * * * * 2066 * * * * * * * * * * 1916 68 0 * * * * * * 1852 0 0 L 69 * * * * * * * * * 0 * * * * * * * * * * 69 0 * * * * * * 1852 0 0 H 70 * * * 1916 * * 1866 * * * * * * * * * 2066 2172 * * 70 0 * * * * * * 1852 0 0 I 71 * * * * * * * 1011 * 1916 2066 * * * * * * * * * 71 0 * * * * * * 1852 0 0 D 72 * * 1866 * * * 1916 * * * * 2172 * * * * * 2066 * * 72 0 * * * * * * 1852 0 0 G 73 * * * * * 0 * * * * * * * * * * * * * * 73 0 * * * * * * 1852 0 0 N 74 * * * * * * * * * * * 0 * * * * * * * * 74 0 * * * * * * 1852 0 0 Y 75 * * * * * * * * * * * * * * * * * * * 0 75 0 * * * * * * 1852 0 0 Q 76 * * * * * * * * * * * * * 1866 * 1038 * * * 2066 76 0 * * * * * * 1852 0 0 L 77 * * * * * * * * 2066 1866 * * * * * 1038 * * * * 77 0 * * * * * * 1852 0 0 G 78 * * * * * 0 * * * * * * * * * * * * * * 78 0 * * * * * * 1852 0 0 R 79 * * * * * * * * * * * * * * 0 * * * * * 79 0 * * * * * * 1852 0 0 N 80 * * * * * * * * * * * 1866 * * * * 463 * * * 80 0 * * * * * * 1852 0 0 V 81 * 1038 * * * 2066 * * * * * * * * * * * 1866 * * 81 0 * * * * * * 1852 0 0 L 82 * * * * * * * * * 1866 * * * * * * 1916 1118 * * 82 0 * * * * * * 1852 0 0 L 83 989 * * * * * * * * 1866 * * * * * 2172 * * * * 83 0 * * * * * * 1852 0 0 K 84 * * * * * * * * 394 * 2066 * * * * * * * * * 84 0 * * * * * * 1852 0 0 N 85 * * * * * * 2066 * * * * 1866 * * 2172 1916 * * * * 85 0 * * * * * * 1852 0 0 G 86 * * * * * 0 * * * * * * * * * * * * * * 86 0 * * * * * * 1852 0 0 E 87 * * * 1866 * 2172 * * * * * 989 * * * * * * * * 87 0 * * * * * * 1852 0 0 D 88 * * 1866 989 * * * * * * * * * * 2172 * * * * * 88 0 * * * * * * 1852 0 0 R 89 * * * 1038 * * * * * * * * * 2066 1866 * * * * * 89 0 * * * * * * 1852 0 0 L 90 * * * * 989 * * * * 1866 * * * * * * * * * 2172 90 0 * * * * * * 1852 0 0 R 91 * * * * * * * * 463 * * * * * 1866 * * * * * 91 0 * * * * * * 1852 0 0 F 92 * * * * 444 * * * * * * * * * * * * * * 1916 92 0 * * * * * * 1852 0 0 Y 93 * * * * * * * * * * * * * * * * * * * 0 93 0 * * * * * * 1852 0 0 V 94 * * * * * * * * * * * * * * * * * 444 * 1916 94 0 * * * * * * 1852 0 0 K 95 * * * * * * * * 963 * * * * * 1038 * * * * * 95 444 1916 * 0 * * * 1852 1000 0 F 96 * * * * 444 * * * * * * * * * * * * * * 1916 96 0 * * * * * * 1852 0 0 G 97 * * * * * 891 * * * * * 1118 * * * * * * * * 97 0 * * * * * * 1852 0 0 P 98 * * 989 2172 * * * * * * * * 1866 * * * * * * * 98 0 * * * * * * 1852 0 0 G 99 * * 1118 * * 891 * * * * * * * * * * * * * * 99 0 * * * * * * 1852 0 0 A 100 444 * * * * * * * * * * * * * 1916 * * * * * 100 0 * * * * * * 1852 0 0 V 101 * * 2066 * * 2172 * * * * * * * * * * * 891 * * 101 0 * * * * * * 1852 0 0 I 102 * * * * * * * 963 * * 1916 * * * * * * 2172 * * 102 0 * * * * * * 1852 0 0 K 103 * * * 1038 * * * * 1866 * * * * * * * 2066 * * * 103 0 * * * * * * 1852 0 0 E 104 * * * 1866 * * * 2066 * * * * * * * * 2172 * * 1916 104 0 * * * * * * 1852 0 0 F 105 * * * * 444 * * * 1916 * * * * * * * * * * * 105 0 * * * * * * 1852 0 0 K 106 * * * * * * * * 538 * * * * * 1684 * * * * * 106 0 * * * * * * 1705 0 0 I 107 * * * * * * * 1000 * 1000 * * * * * * * * * * 107 0 * * * * * * 1532 0 0 T 108 * * * * * * * * * * * * * * * * 0 * * * 108 0 * * * * * * 1000 0 0 D 109 * * 0 * * * * * * * * * * * * * * * * * 109 0 * * 0 * * * 1000 0 0 //