HHsearch 1.5 NAME c2fhoB_ FAM FILE c2fhoB_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2fhoB_.a3m DATE Tue Mar 9 06:45:33 2010 LENG 87 match states, 87 columns in multiple alignment FILT 114 out of 10623 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.9 EVD 0.4462 1.2503 SEQ >ss_dssp CCCCCSSCTTCCSEEEEESCCSSCCHHHHHHHHTTSSCEEEECCCCSTTTTTEEEEEESCSHHHHHHHHHTTTCEETTEECEEEECC >sa_dssp EEEEEEDCEEADEDABAEDBCEECEEEDAEECADEDCDCEDCEECEEEEDECCBDACADDCDCABEBBEEAEEDECEEEEAECECDE >ss_pred CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEECC >ss_conf 998889848888799987867988989999997420223011012565311355444159779999999728959888789999619 >Consensus xrxxxxxpxxxxxxlxVxnLpxxxxxxxlxxxfxxxgxvxxxxxxxxxxxxxxaxvxfxxxexaxxAixxlxgxxixgxxlxVxxxx >c2fhoB_ GRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYN >UniRef50_D0NDJ0(84-173:382) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NDJ0_PHYIN E=3e-13 s/c=0.84 id=16% cov=99% GAGGRRIETSDDHSIFVGDLAPDVTDELLLATFnARFTTVrgaKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCSSRPMRVSV-- >UniRef50_C5LWK2(386-456:632) Putative uncharacterized protein n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LWK2_9ALVE E=1e-08 s/c=0.86 id=17% cov=67% -------------ILFVYGFPRSYSEDDLKEAFSKFGEVQEAKVKRKWGHRgygaGYGWIRYANRDECERCVAA----------------- >UniRef50_C1BQI5(308-406:417) Splicing factor 45 n=1 Tax=Caligus rogercresseyi RepID=C1BQI5_9MAXI E=1e-06 s/c=0.55 id=15% cov=101% GKPSiTDMMKNPSKVVLCKNMvgPGEVDeflEPEVKEECnEKYGDVIKVVIYEFSNSSAeenavRIFIEFKRVESAIKAVVDLNGRFFGGREVQANFYD >UniRef50_Q54GU2(419-498:1235) Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54GU2_DICDI E=0.0007 s/c=0.57 id=17% cov=87% -------EPIPENAVFIVGLDSAVSKFDIITFFEKFGKISSFQLSPSPRfnKQQFVMIKYETQESARLACKSTD-IEFFGTIITI---- >UniRef50_B2VS22(161-234:592) Putative uncharacterized protein n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2VS22_PYRTR E=1e-06 s/c=0.74 id=14% cov=83% --------------IVIKNIPFAVKKEQLVNLMTELRLPLPYAFNYHFDNGVFRGLAFANFTTAEetaAVIESMNHFELNGRKLRVEY-- >UniRef50_A4IGK4(92-182:838) RNA-binding protein 5 n=9 Tax=Euteleostomi RepID=RBM5_XENTR E=9e-06 s/c=0.56 id=16% cov=100% -RQDYYMDEKESKTIMLRGLPININENDIRELVESFegpqPADVRLMKRKTGLSRGFAFVEFYHLQDATRWMEANQKKlVIQGKTIAMHYSN >UniRef50_C5P118(34-118:222) RNA recognition motif containing protein n=3 Tax=Onygenales RepID=C5P118_COCP7 E=0.0001 s/c=0.56 id=16% cov=87% ----------TSRHLFVQNLSPGTTSQQLKDYLQATGTVSRCDVLDQRSFGRTKVCATVSFQDEEvakAAISMFDNSTFMGSRIRVRF-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 2504 * * * * 680 * * * * * * * * * 2325 * * * * 1 0 * * * * * * 6236 0 0 R 2 5232 * * * * * * * 2898 * * 5080 * 2992 677 4935 5288 * * * 2 38 * 5269 * * * * 7471 0 0 A 3 3637 * 5577 4575 * 3586 * * 5293 * * 3390 1052 4631 5451 3579 * 5416 * * 3 0 * * * * 0 * 7881 0 1000 N 4 2738 * 4140 5356 * 3552 * * 4066 * * 2645 4820 * 2925 2425 3172 * * * 4 67 4472 * 0 * * * 8032 1797 0 I 5 4107 * 5640 5804 3998 4143 4649 3713 4599 4742 5051 4036 4760 5805 3983 3153 2963 3672 * 4016 5 0 * * * * * * 8044 0 0 R 6 5938 * 3711 3459 * 4722 * 5757 2980 5577 * 4750 3214 4968 2216 2614 5619 * * 4779 6 0 * * * * * * 8236 0 0 L 7 4074 5826 * 6159 4943 * 5954 3302 5170 2512 2367 5989 4359 5126 4772 4561 5038 2830 * 5724 7 0 * * * * * * 8370 0 0 P 8 4121 * 4065 4015 * 4898 * 5176 4449 5834 5876 4865 950 4500 * 4131 6147 6364 * * 8 54 4754 * 1000 1000 * * 8499 1768 0 P 9 4284 * 5324 2786 * 4478 6172 6145 3909 * * 5933 1421 6367 5865 3111 4269 4250 * * 9 89 4838 5341 1457 654 * * 8627 2277 0 E 10 6062 * 2869 2098 * 4335 5225 6022 3079 4662 * 3276 4267 3688 4838 4091 * 5303 * 6235 10 79 4237 * 1202 823 * 0 8761 2908 1738 V 11 3365 6542 6294 4155 * 6453 * 5422 4461 4103 6372 4482 1353 5030 4832 3999 4261 4154 * * 11 56 4721 * 1200 824 0 * 8900 2367 1738 N 12 5211 6445 3010 5443 6587 4634 * * 4554 6523 * 2389 3565 4845 5588 1682 4173 * * 6350 12 95 4213 6695 974 1026 * * 8974 3262 0 R 13 4453 5348 6760 * 4763 * 4109 * 2758 * 5483 3136 6549 4457 2112 3596 3173 * 6529 4323 13 77 4262 * 2085 388 * 0 9001 3369 1000 I 14 4335 3706 * 5555 6667 * * 3240 5739 * * 4173 * 5459 3145 3315 1642 3238 * * 14 105 4164 6138 1982 421 0 * 9037 3640 1000 L 15 4379 * * * 6772 * * 1923 * 1118 6351 * * * * * * 2279 * * 15 0 * * * * * 0 9083 0 1000 Y 16 * * * * 1794 6018 4185 4349 * 3811 5169 * * * 5400 6626 5725 3252 4114 1848 16 13 6772 * 3907 100 0 * 9083 1000 1000 I 17 * 4424 * * 5644 * * 1875 * 3545 5010 * * * * * 6190 915 * * 17 0 * * * * * * 9120 0 0 R 18 5502 * 4413 3900 5390 2075 6413 6727 2526 6824 6557 4587 6359 5158 3312 2904 4258 * 6411 6879 18 25 5854 * 1000 1000 * * 9120 1773 0 N 19 6819 * 3952 * * 2183 5154 * 5159 * * 830 * 5862 5041 4977 * * * 6936 19 0 * * * * * * 9161 0 0 L 20 * * * * 4511 6193 * 1895 * 895 4535 * * * * * * 3603 * 6560 20 11 7077 * 1000 1000 * * 9161 1000 0 P 21 3781 6932 4100 5404 * 5272 4842 * 6698 7024 * 3752 1021 6002 5213 3012 6065 * * 6574 21 0 * * * * * * 9161 0 0 Y 22 6105 * 4273 3751 3670 5306 5699 4477 2708 4633 * 5166 2448 4317 4732 3684 5577 5736 6538 3818 22 12 6928 * 1000 1000 * * 9161 1000 0 K 23 4580 * 2366 3115 5643 3598 4397 * 3935 6645 * 3103 7063 4058 5017 3691 3566 6671 7140 5068 23 0 * * * * * * 9160 0 0 I 24 3927 4170 * * 4462 * * 2324 * 3563 4189 6324 * * * 6754 2591 2041 5323 4696 24 0 * * * * * * 9160 0 0 T 25 4528 6705 3138 4387 * 5979 6848 7099 3048 * * 3457 6154 5741 4441 2831 1715 6738 * 6847 25 11 7081 * 1585 585 * * 9160 1000 0 A 26 4790 * 3122 1488 5603 6509 6379 4492 3454 5802 6879 6740 5051 4109 3668 6671 5914 4742 5262 5587 26 46 5002 * 1188 834 * * 9160 2451 0 E 27 3835 6855 2993 1854 5662 5738 * 6752 3726 * * 3449 4832 3509 3979 4208 4589 5501 * * 27 0 * * * * * * 9160 0 0 E 28 5344 * 1590 1984 4266 6705 6197 5740 5758 4850 4850 4583 * 3335 * 4835 6718 5422 * * 28 14 6705 * 0 * * * 9160 1000 0 M 29 * 6500 * 6876 4252 * * 2168 * 1074 5521 * * * 6153 6740 * 2432 * * 29 0 * * * * * * 9160 0 0 Y 30 3613 5508 6054 4962 4488 6170 6148 4617 2523 4015 4119 * * 4563 2581 4559 5157 4395 5791 3367 30 0 * * * * * * 9160 0 0 D 31 4045 * 2824 2201 5452 5459 4935 6021 3490 * * 3169 * 3331 3746 4047 4851 * * 5812 31 0 * * * * * * 9160 0 0 I 32 3937 * * 5507 2441 * 4373 2764 4760 2036 5669 6548 * 6168 5187 5878 4615 3817 * 4273 32 0 * * * * * * 9160 0 0 F 33 5836 4532 * * 734 5664 6197 4881 * 2750 4090 * * * * 6153 * 5231 * 5466 33 46 5486 6764 2266 336 * * 9160 2369 0 G 34 3438 * 5666 3243 * 3143 * * 2896 4725 6319 4314 6863 4807 3390 2231 4424 5965 * 5729 34 20 6193 * 1585 585 0 * 9149 1000 1000 K 35 3593 6004 4199 4017 * 4464 5220 4957 2295 * * 4542 4097 3419 3473 3035 4350 5549 * * 35 44 7180 5445 1585 585 * * 9160 1000 0 Y 36 3864 4148 * 4950 1755 * 3845 3820 5892 3567 5575 5530 6961 * 6810 6729 * 3763 5935 2779 36 170 3441 5699 1615 570 0 * 9147 4768 2385 G 37 3642 5851 4717 5007 5686 910 6993 4147 4499 6852 5151 4781 4753 6819 * * 5128 5285 * * 37 34 5436 * 956 1046 0 * 9139 2371 1802 P 38 4158 6154 3690 3202 6837 4037 6752 3596 3540 7030 7027 3954 3219 4931 3906 3361 4165 4150 * * 38 64 4789 7128 1745 511 * * 9160 2911 0 I 39 5413 5863 5002 5873 4131 5971 * 2226 5359 3352 * * 4378 * 5342 4638 3908 1701 * 6074 39 45 5505 6858 2527 275 0 * 9157 2412 1000 R 40 4773 6717 4604 2918 * 6862 * 3493 3047 3583 5115 4320 6749 4293 3448 4083 4529 3053 * 5322 40 12 6897 * 1000 1000 0 * 9152 1000 1000 Q 41 3493 6153 3984 3950 5183 4170 7046 4513 3519 4216 5901 4842 4191 4314 3048 3392 4312 4476 * 5291 41 40 6062 6324 2690 243 * * 9160 1693 0 I 42 3782 4528 4550 4514 4563 5699 6820 3118 4816 3427 4768 4441 5356 4443 5722 5802 5829 2112 6655 4855 42 24 5912 * 1065 938 * 0 9126 1690 1000 R 43 4997 5551 4359 3724 6104 5551 4534 3683 3360 4502 4285 4851 6150 6660 3204 5199 3682 2995 * 3726 43 42 5836 6480 2272 335 0 * 9126 1717 1000 V 44 5048 5812 4383 4419 3050 * 5794 2857 5331 3102 4333 5122 6909 * 4133 5344 4663 2708 5577 4121 44 60 4938 6972 2317 323 * 0 9136 2798 1000 G 45 5235 6064 4380 4286 3561 4239 4610 3614 3601 4035 3734 4095 3615 4392 3960 6671 5643 4136 * 4588 45 15 * 6570 * * * 0 9129 0 1766 N 46 5281 5010 4334 3548 4402 6808 5907 4170 2989 4694 5651 3731 4069 3939 3294 4236 4393 5080 6701 4230 46 72 4666 6801 1286 762 590 1575 9107 2914 2307 T 47 * * 2544 4017 5409 3977 4769 6818 3990 6154 5825 2882 5134 5306 3277 3275 3141 * * 5048 47 61 4822 7310 2078 390 959 1042 9133 2807 1811 P 48 5726 6822 3883 4595 4261 2315 4524 4266 3280 4722 5105 4163 3727 4778 4088 4144 5624 5740 7241 5975 48 25 5885 * 1521 618 980 1020 9150 1703 1731 E 49 4702 5451 3587 4261 5784 5478 5314 5467 2191 5080 6070 3888 3556 3885 3137 3936 5027 6131 * 7075 49 69 4735 6803 2149 369 * 0 9166 3438 1000 T 50 4538 5331 4924 6030 4875 3528 6824 5027 3637 4209 * 3085 3460 5860 3939 2475 3425 6059 * 6638 50 39 5922 6659 976 1024 * 0 9158 1677 1726 R 51 4650 6029 6896 5841 4843 3765 6005 6645 1946 3552 * 4137 4828 6145 2367 4504 4386 5651 6473 5864 51 117 4263 5275 1748 510 1655 551 9142 3717 2369 G 52 3956 4238 4698 5750 5335 1503 5934 5709 5316 5248 6105 3203 5205 5569 3930 4690 5224 4662 * 5708 52 84 4136 * 2451 291 319 2332 9120 3956 3363 T 53 * 3466 5370 6422 2108 6069 5249 5283 5721 4868 5250 5357 * 3713 4730 3990 4096 4902 6151 2411 53 59 4630 * 2642 252 0 * 9156 3148 1000 A 54 1208 3448 6457 6148 6331 2250 * 5654 5164 5230 * * 6154 * 4065 6974 5498 4857 * 6079 54 11 7030 * 1585 585 * * 9160 1000 0 Y 55 * 4981 6503 6058 1489 3735 5702 4841 6918 3059 5650 6879 * 6324 4995 6938 4567 4123 6881 2835 55 12 6879 * 3322 152 * * 9160 1000 0 V 56 4715 4448 * * 4425 5456 * 2153 5623 3434 5010 * * 6079 6148 * * 1253 * 5073 56 14 6724 * 1000 1000 * * 9160 1000 0 V 57 4297 5394 3877 1811 6837 4821 * 5309 4489 5541 5279 3921 * 4098 3836 4640 3420 4601 6240 5116 57 57 4680 * 3282 156 * * 9160 3031 0 Y 58 * 5818 * * 877 * * 6600 6148 4294 3879 * 6079 * * * * * * 1839 58 59 4651 * 2427 297 * * 9160 2712 0 E 59 3884 4714 3829 2797 6598 5155 5603 5155 2946 4241 5874 4570 3857 4622 4338 3947 4167 4185 * 5915 59 0 * * * * * * 9160 0 0 D 60 5748 * 2210 3727 6598 * 4584 6932 4417 6424 6862 2757 * * 4171 2588 2491 * * 6079 60 14 6645 * 3700 115 * * 9160 1000 0 I 61 4374 * 5432 2908 3754 6153 5017 4128 4258 3337 6838 5708 3225 4452 3505 7076 4856 2761 * 6661 61 0 * * * * * * 9160 0 0 F 62 3704 6379 2805 1490 5926 5689 6919 6913 3447 * * 4285 4845 4209 4245 4549 4941 * * * 62 0 * * * * * * 9160 0 0 D 63 3243 5940 2238 2651 * 4630 4466 6724 * 6908 6562 4357 6700 4316 * 2548 4706 4087 * 5952 63 0 * * * * * * 9160 0 0 A 64 852 5066 * * 5747 * * 6844 5540 4666 4012 6509 5923 4753 6021 4020 4932 3751 * 5848 64 27 5779 * 1023 977 * * 9160 1829 0 K 65 3811 * 4271 2378 6671 5478 7027 3474 3016 4235 5385 5270 7180 3250 3830 4038 4908 5002 6500 6752 65 27 5771 * 1585 585 * * 9160 1729 0 N 66 3119 * 3834 3948 * * * 5668 2398 3257 5377 3944 * 3311 3259 4570 4054 5870 6324 6663 66 25 6718 7069 1585 585 * * 9160 1000 0 A 67 623 3635 * * 5866 * * 5598 * 4931 6499 * * * * 4787 6141 2950 6848 * 67 12 6912 * 1585 585 0 * 9163 1000 1000 C 68 4929 4767 * 6154 5076 * 6833 1845 4248 1894 3804 * * 6935 5561 * * 3034 6457 4518 68 35 6828 6043 1000 1000 * * 9160 1000 0 D 69 3646 * 3985 2985 * 6497 5065 5347 2177 5286 6745 3879 * 3146 3918 3894 4210 5277 * 6072 69 41 * 5172 * * 0 * 9163 0 1747 H 70 2519 6306 6059 3191 * 5151 4202 5829 3376 4284 5938 3957 * 3347 5490 3955 3644 4193 6478 5101 70 28 * 5692 * * 0 * 9134 0 2410 L 71 4881 6657 6396 6743 3158 * * 5374 5902 1200 2418 5870 * * 5242 * 4664 5614 * 4147 71 32 5505 * 1691 535 0 * 9142 1798 1785 S 72 * * 2287 4786 * * 2299 * 4498 6928 * 1828 5844 3536 5856 3837 6600 6562 * 6663 72 14 6663 * 1000 1000 * * 9160 1000 0 G 73 5355 * 4206 3978 7099 1209 6822 * 3705 6833 * 2521 5586 3834 5071 5803 6501 * * * 73 0 * * * * * * 9160 0 0 F 74 4947 * * 5665 3686 5595 4187 4286 2676 4483 5306 * 6762 4037 4597 3970 2743 3998 * 2947 74 54 4773 * 819 1206 * * 9160 3017 0 N 75 * * 3868 3015 4453 * 4820 4831 2654 4264 5275 3484 4178 3843 4117 5252 4304 3658 * 5218 75 0 * * * * * * 9160 0 0 V 76 5756 6404 * 6326 2736 * * 1806 * 2009 4448 * 6944 6939 * * 5820 3115 4857 4539 76 25 5868 * 674 1421 * * 9159 1712 0 C 77 4648 4880 3482 4336 3930 2648 4058 5395 3463 4185 4476 3341 6259 4919 3550 5385 6912 * 6922 5879 77 14 6678 * 1585 585 * * 9151 1000 0 N 78 * * 2855 3749 * 914 6692 * 5159 * 6908 2926 * 5882 * 4502 5802 * * * 78 12 6971 * 1000 1000 * * 9147 1000 0 R 79 5413 4688 * 5119 * 6753 3476 * 2274 * 6292 3905 * 4268 1551 3732 6238 6404 * 5065 79 12 6858 * 1000 1000 * * 8965 1000 0 Y 80 5717 * 4986 3715 6551 * 5685 4804 2713 4879 5025 4073 2849 4679 2621 4787 3593 4519 6498 5906 80 12 6938 * 2322 322 * * 8961 1000 0 L 81 * * * * 6277 * * 1489 * 1208 4265 * 6213 * * * * 2917 * * 81 0 * * * * * * 8961 0 0 V 82 6472 * 6706 3988 5379 * 5839 4913 2183 5171 * 4171 * 4091 1980 4384 5489 3183 6640 4819 82 0 * * * * * * 8901 0 0 V 83 5554 6664 * * 6426 * * 1960 * 3550 4974 * * * * * * 778 * * 83 0 * * * * * * 8878 0 0 L 84 4676 * 3558 2528 5128 * 4188 * 4167 4031 6346 3742 * 2789 4414 2430 4715 * * * 84 24 5930 * 1000 1000 * * 8648 1000 0 Y 85 5806 * * * 1437 * 4859 * 5512 6047 4957 * 4864 * * * * 3557 4864 1492 85 0 * * * * * * 8432 0 0 Y 86 2346 * * * 2977 * * * * * * * * * * 1559 * 4676 4386 1999 86 0 * * * * * * 6838 0 0 N 87 * * 2307 * * * * * * * * 1001 * * * 1746 * * * * 87 0 * * 0 * * * 6303 0 0 //