HHsearch 1.5 NAME c2f8nK_ FAM FILE c2f8nK_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2f8nK_.a3m DATE Mon Mar 8 22:55:28 2010 LENG 105 match states, 105 columns in multiple alignment FILT 120 out of 212 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.4423 0.9858 SEQ >ss_dssp CCCHHHHHTCSSCHHHHHHHHHHTTSCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHSHHHHHHTTTCCCTTCCCCCCCCG GGSCC >sa_dssp EEEDBEEDECECDACEBBDDCDEDEEDEECEEDDACEDADDDCEDDDCCEECACDBBEEEEDEEDDDDADBCBBCECEEBDEECDEDECEEAEEDEEEEE EEEEE >ss_pred CCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCH HHCCC >ss_conf 9766322350301999999985087234011304599999999999999999999986469547209998763128677999847813148980575338 86089 >Consensus axsxsxraxLxFPvxRixrxlkxxxxxxrisxxapvxlaaxlEylxxeilelAxxxaxxxkxkxIxpxhlxxAIxxdxelxxLxxxvxixxggvxpxixx xllxx >c2f8nK_ AKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQA VLLPK >UniRef50_UPI00015B431F(3-95:226) PREDICTED: similar to NC2alpha n=1 Tax=Nasonia vitripennis RepID=UPI00015B431F E=2e-10 s/c=0.72 id=18% cov=87% --SKKKKYNARFPPGRIKKIMQTDEEVGKVAQAVPIIISRTLELFVHSLLTKTMQITSAKQAKTLSPSHMKQCILSEsrfDFLKDLVKNLPDASG----- -------- >UniRef50_A7TGB9(39-118:120) Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TGB9_VANPO E=0.0001 s/c=0.60 id=23% cov=33% ------------------------------------------------------NVPKEMDCKRIIGKFIKQTILQDEKFDFLRKHIC------------ ----- >UniRef50_B9RMF4(15-89:141) DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RMF4_RICCO E=0.0003 s/c=0.62 id=20% cov=70% -----------FPTGRVKKIMKLDKDINKVTSDALFLVSRSTELFLRLLAEKSAEVATEQKRKTIKLDHIRIAVKRHQPTSDFL---------------- ----- >UniRef50_Q8SSG3(29-114:128) Histone H2A n=1 Tax=Encephalitozoon cuniculi RepID=H2A_ENCCU E=5e-11 s/c=0.80 id=29% cov=82% --------------SQIKKIM-KDRTRMRISKDALVAVSACVMYLISEITDGAKNVASTDGKKKVMPKHINNAICNDTELHFVGHDWLIKNGGMKSYIAP ----- >UniRef50_B3SCQ2(92-173:1171) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3SCQ2_TRIAD E=1e-08 s/c=0.74 id=27% cov=78% -----KRSHLSACVDKFHSVLQKDILCYKIDQQLSLYVITVADYLICNILKLTGTYIRNIKHTEIGSQDIKIAMFANNPLQELFNR-------------- ----- >UniRef50_Q6CI01(51-130:205) YALI0A02937p n=1 Tax=Yarrowia lipolytica RepID=Q6CI01_YARLI E=0.0002 s/c=0.58 id=26% cov=32% --------------------------------------------------EQAGLMARMDQRKTLAYKDVAEAIAKNPKLEFL----------------- ----- >UniRef50_Q58CM8(68-164:195) Nuclear transcription factor Y subunit C-10 n=3 Tax=Arabidopsis thaliana RepID=NFYCA_ARATH E=7e-13 s/c=0.78 id=21% cov=81% ------------PLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRVPfgphcVTHQGVQ P--------- >UniRef50_Q8SQT6(3-85:95) CLASS 2 TRANSCRIPTIONAL REPRESSOR similar NCB1_yeast n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQT6_ENCCU E=2e-05 s/c=0.61 id=28% cov=61% -KQESQKKKLTrFPISRLKRIMQLNEDIGKIGASVPVVASKAIEMFLTEIVGLTLKEARKKSSSR----------------------------------- ------ >UniRef50_A9TUW3(195-288:304) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TUW3_PHYPA E=5e-10 s/c=0.70 id=27% cov=80% ASSRAKKSqqsllTLAFPISRVRRLVKSEGDIQWVGVEAGFLIAKATEIFLEKLVEDAFERMQGNGQASILYPHLSSHVASSERLEFL------------ ---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 171 * * * * * * * * * * * * * * 3161 * * * * 1 0 * * * * * * 3105 0 0 K 2 * * * 2709 * * * 5118 2137 * * * * 1877 2264 4492 5094 4768 * * 2 0 * * * * * * 4588 0 0 T 3 4709 * * 5201 * 3442 * * 4922 5306 * * * 3987 * 741 3026 * * * 3 0 * * * * * * 4612 0 0 R 4 * * * 5185 * * 4251 * 1571 5599 * * * 3486 1303 6013 4247 * * * 4 0 * * * * * * 4617 0 0 S 5 3392 * * * * * * * 2980 * * * 3085 * 5335 795 4088 * * * 5 0 * * * * * * 4828 0 0 S 6 1861 * * 5733 * * 6642 5256 2473 6296 * 6192 * 3270 4806 2418 4039 3720 * * 6 0 * * * * * * 4985 0 0 R 7 * * * * * 4899 * * 1369 * * * * * 845 * * * 5475 * 7 15 6570 * 0 * * * 5075 1000 0 A 8 933 4741 * * * 3761 * * 5167 5892 * 5577 5039 5510 * 2601 6086 5550 * 4437 8 32 5506 * 2322 322 * * 5178 1000 0 G 9 5233 * 6588 2698 * 1236 4978 5545 3601 * * 4489 5601 6725 * 3403 4034 5745 * * 9 66 4492 * 1447 659 * * 5336 2074 0 L 10 5897 6076 * * * * * 4612 * 497 5163 * * * * 4107 4355 3763 * 6566 10 26 * 5826 * * * * 5388 0 0 Q 11 4438 * 6083 * 5232 * 6433 3200 4348 4622 * 4651 * 1905 3977 3228 2995 3324 * * 11 21 6128 * 0 * * 0 5571 1000 1000 F 12 5355 * * * 362 * * 4175 * 3372 6537 * * * * * * 5273 * 6788 12 0 * * * * 0 * 5683 0 1000 P 13 6237 5639 * * * * * 5835 5688 5556 * 5838 389 * 5930 3358 6209 * * * 13 0 * * * * * * 5875 0 0 V 14 4784 5901 * * * * * 3749 * 3399 3457 * 5240 * * 6908 3223 876 * * 14 0 * * * * * * 5867 0 0 G 15 1970 6389 4400 6277 * 1610 * * 5372 * * 4309 * * * 2115 4657 * * * 15 0 * * * * * * 5875 0 0 R 16 * 5205 * 5463 * * 5403 * 3532 4943 * * * 3915 475 * * * * 5515 16 14 * 6714 * * * * 5887 0 0 V 17 5491 * * * 3481 * * 1165 * 4860 4974 * * * * * 5403 1505 * * 17 0 * * * * * 0 5833 0 1000 H 18 5222 * 4359 2558 3992 4521 2276 * 1845 * 6635 * * * 3259 6584 * * * 4696 18 0 * * * * * 0 5846 0 1000 R 19 6723 * * * * * 4684 6382 2146 6299 * 4726 6318 4289 936 4621 5322 * * 6489 19 23 6009 * 0 * 0 * 5846 1000 1000 L 20 6056 6744 * * 4939 * 4954 1836 6022 1891 5275 * * 5195 6153 5018 * 3903 3663 3297 20 0 * * * * * * 5901 0 0 L 21 * * * * * * * 4844 * 941 1397 * * * * * 6112 4316 * * 21 18 * 6356 * * * * 5901 0 0 R 22 * * * 6684 6472 6675 6918 * 1443 6111 * * * 2154 2037 6009 5853 4429 5009 * 22 11 7083 * 1000 1000 0 * 5899 1000 1000 K 23 3267 * 3599 2175 * 5677 5830 6610 2098 5029 * 4818 * 4950 4395 3105 5142 5598 * * 23 18 * 6307 * * * * 5908 0 0 G 24 3982 * 1813 3323 * 1836 * 5008 6426 5034 5278 4731 * 6764 3764 5194 5305 * * * 24 0 * * * * 0 * 5896 0 1000 N 25 5433 5025 3988 2685 * 6303 5771 4536 5448 6158 * 3356 5254 3429 2227 4442 3485 4295 * * 25 61 * 4596 * * * * 5908 0 0 Y 26 5397 * 2641 3589 4546 6570 4215 5036 5582 3072 5550 5797 5029 6721 5090 5105 4786 4315 * 2113 26 9 7377 * 0 * 0 * 5792 1000 1675 S 27 2218 4060 6281 * * 4202 5157 3134 6650 6450 * 4493 7643 4453 4449 3197 3970 2559 * 6472 27 60 6665 5029 1178 841 * * 5910 1263 0 E 28 * 6078 4296 4544 4837 2537 5591 5452 2557 5377 4712 5148 4653 4111 3239 5978 * 4812 4505 3622 28 73 4841 6096 447 1907 * 0 5789 2186 1000 R 29 * 3918 * * 5822 * 5712 4459 2212 6492 3831 * * 4931 1106 5826 6568 * 6277 5967 29 50 5494 6433 0 * 1068 935 5785 1398 1311 V 30 * 3489 * * 5243 * * 1466 * 2844 4729 * 5682 * * * 7035 1650 * * 30 0 * * * * * 0 5819 0 1338 G 31 2887 * 3854 7058 * 2151 4538 * * * 6477 4658 * 7289 * 1293 5431 6034 * 5957 31 0 * * * * * 0 5945 0 1338 A 32 2267 4754 4326 4346 * 5078 6299 4924 3989 5879 * 5137 6471 2812 5048 2157 5233 5439 * 6081 32 14 * 6663 * * * 0 5942 0 1338 G 33 3384 * 3202 2786 * 3754 5196 * 6736 6370 5013 4687 5622 4645 4964 2310 3052 6167 * 5087 33 0 * * * * 290 2459 5940 0 1876 A 34 799 5226 * * * 6966 * * * 5908 6397 * * * 4994 4606 2830 2748 * * 34 0 * * * * * 0 6012 0 1000 P 35 2785 6356 * * * 6299 * 5687 * 4612 6540 6398 1062 5121 * 3040 4802 3609 * * 35 0 * * * * * 0 5967 0 1000 V 36 5642 * 5524 * 3414 * 6540 2196 5380 3775 6937 * 6821 * * 4622 * 1057 * * 36 0 * * * * * 0 5967 0 1000 Y 37 4342 * * * 2492 * * 5048 * 2072 6078 * 6635 * * 5672 5379 4224 * 1385 37 0 * * * * * 0 5970 0 1000 L 38 6068 6114 * * 3590 * * 2740 * 1159 3716 * 5032 * * 5473 5259 2890 * * 38 0 * * * * * 0 5970 0 1000 A 39 1258 5831 * * * 4242 * 5029 * 5523 * 4752 * * * 1898 3085 4794 * * 39 5 8180 * 3000 193 * 0 5970 1000 1000 A 40 874 5032 5055 * * 4814 * * 2507 6869 6619 * * 5873 3547 6429 5389 5303 * * 40 20 6187 * 4170 82 * 0 5970 1000 1000 V 41 1823 4356 * * 6063 5222 * 2746 * 6081 4553 * * * 4937 4606 4694 1699 * * 41 0 * * * * * 0 5987 0 1000 L 42 4288 3986 * * * * * 3275 * 917 3857 4419 6052 * * 6203 3385 6298 * * 42 0 * * * * * 0 5987 0 1000 E 43 6142 * 4450 300 * 4611 * * 6691 * 6298 5557 * 5108 6146 * * * * * 43 0 * * * * * 0 5987 0 1000 Y 44 6593 * 6166 * 4235 * 5821 3401 5335 2900 4535 4254 * * * 5558 * 6837 6292 962 44 0 * * * * * 0 6137 0 1000 L 45 * * * * 1483 * * 4116 * 1042 5237 * * * * 5211 * 4461 * * 45 0 * * * * * 0 6137 0 1000 T 46 3249 5813 * * 6642 5426 * 2550 * 2596 4050 * * * * 4155 1982 2859 * * 46 0 * * * * * 0 6269 0 1000 A 47 1888 5487 5909 2729 6826 4259 5617 5341 3875 4285 5712 6831 4512 4801 5161 3553 4453 4709 * 6674 47 0 * * * * * 0 6438 0 1000 E 48 * * 3587 1008 * * 5967 * 3170 5239 * 3814 * 4656 4165 3878 6069 * * 5909 48 13 * 6794 * * 0 * 6438 0 1000 I 49 5211 * * * 3969 * * 1759 * 1650 5433 * * * * * 5426 2008 * * 49 0 * * * * * 0 6357 0 1000 L 50 4796 7092 * * 5781 * * 3407 * 1074 3912 6857 6612 * * 5100 3174 2930 6285 * 50 0 * * * * * 0 6373 0 1000 E 51 5199 7035 3306 934 * 4777 7047 7142 3422 4992 5216 5788 * 5150 6696 5143 4221 * * * 51 0 * * * * * 0 6459 0 1000 L 52 4814 5143 4499 3621 * 4880 5865 5666 3747 1378 3431 * * 5664 3481 6967 4630 5574 * 6754 52 0 * * * * * 0 6459 0 1000 A 53 828 * * * * 4003 * * * * * * * 5040 * 2453 3075 4556 * * 53 17 6427 * 0 * * 0 6434 1000 1000 G 54 3313 4838 5040 * 4589 1359 5645 5396 6056 5274 5667 5202 * * * 5136 * 4062 3341 3570 54 0 * * * * * 0 6434 0 1000 N 55 5804 * 4169 3035 * 6942 6164 4597 2827 7289 5325 1651 * 3854 5344 3743 3873 6974 * 7464 55 0 * * * * * 0 6342 0 1000 A 56 2536 6623 5326 2893 5205 5861 4111 3776 5919 * 5113 4308 * 4186 5480 4505 5782 2727 * 3378 56 0 * * * * * 0 6342 0 1000 A 57 1093 5872 * * * * * 5736 * 6144 5803 * 4647 * 4231 3599 2228 3754 * * 57 0 * * * * * 0 6342 0 1000 R 58 5697 5251 4438 3570 * 6935 4938 6446 2469 5024 * 4388 * 3163 2040 3501 6594 4396 6415 * 58 0 * * * * * 0 6342 0 1000 D 59 4409 * 2391 2637 6264 4725 6646 4889 2995 3548 7290 3170 * 4759 5876 3829 4694 * * 5993 59 16 6493 * 0 * * 0 6369 1000 1000 N 60 5128 6510 3687 5907 6107 4490 3803 4146 3710 4484 6468 2445 5068 4122 3439 2704 5055 * * * 60 16 6544 * 1000 1000 * 0 6369 1000 1000 K 61 * * 6468 * * 2806 4243 * 1395 5068 * 3042 * 4984 3215 3728 4421 * * * 61 0 * * * * * 0 6369 0 1000 K 62 3460 6468 * 6602 * 5843 4469 * 2270 4629 6884 * 5702 3837 1956 2865 4278 4917 * * 62 49 4908 * 770 1274 * 0 6369 1561 1000 T 63 4937 6252 * 5051 * 7405 * 6184 1141 * 4930 5448 * 4404 2774 3896 3375 5333 * 6228 63 50 4885 * 1299 752 * 0 6369 1878 1000 R 64 5068 5370 * 4146 6061 * * 4773 4527 4067 7009 4806 * * 1448 3615 2397 5144 * 5308 64 0 * * * * * 0 6369 0 1000 I 65 * * * * 5803 * * 658 * 2275 5260 * * * * * * 3110 * * 65 15 * 6561 * * * 0 6347 0 1000 I 66 3915 * * 6600 * 5718 6046 3396 3893 5105 6133 3565 * 3059 5231 2661 1880 5463 * * 66 0 * * * * 615 1526 6344 0 1381 P 67 4111 * * * * 5513 * * 3150 4641 * 6121 953 6230 4356 4847 5736 5812 * 3276 67 0 * * * * * 0 6347 0 1000 R 68 5460 5205 4550 2975 7020 * 5845 5341 3834 6478 * 5732 5789 3014 1922 2827 5766 5641 5845 5160 68 0 * * * * * 0 6386 0 1000 H 69 * * 1959 * 6514 * 810 6420 5081 4534 5944 5397 * 5238 * * 6558 * * * 69 0 * * * * * 0 6386 0 1000 L 70 * 5081 * * * * * 1560 5238 1278 4227 * * 5845 * * * 3038 * * 70 0 * * * * * 0 6386 0 1000 Q 71 3662 4037 4534 5088 5388 * 3717 6334 2217 4151 5380 4694 * 3428 4122 2943 4373 6307 * * 71 0 * * * * 0 * 6386 0 1000 L 72 4222 * * 4061 * 6506 5062 4932 3804 1836 4829 4688 * 3070 4168 3395 4103 4721 5558 * 72 0 * * * * * * 6390 0 0 A 73 581 3776 * 6428 * 4674 5811 * * * * * 5246 * * 4379 5031 3560 * * 73 43 * 5082 * * * * 6390 0 0 I 74 5524 * * * 6433 * * 1287 * 4087 3918 5894 6818 * * 7258 5197 1425 * * 74 0 * * * * 0 * 6262 0 1000 R 75 3362 3493 5267 4429 5698 4372 4403 * 3128 3684 * 5236 * 3749 2103 5040 5646 6211 * 4761 75 6 * 7836 * * * * 6287 0 0 N 76 3809 7042 6730 5925 * 3906 6498 * 3073 * 5841 1402 5088 4669 3940 3225 4013 * * * 76 17 * 6429 * * * 0 6199 0 1000 D 77 * * 1068 4974 * * 5136 5160 6579 * * 2448 * * 6370 3110 3609 5579 * 6585 77 16 6526 * 1585 585 660 1445 6158 1000 1333 E 78 5092 * 2865 1514 * 5343 * 6271 3583 4384 5479 4671 3472 4199 5298 * 4337 4907 * * 78 0 * * * * * 0 6164 0 1000 E 79 * 6741 4876 1362 4597 6627 5115 5178 4365 4998 4447 6354 4701 3359 5094 * 4495 3353 * 6127 79 0 * * * * * 0 6125 0 1000 L 80 * * * * 1742 * 6709 * * 773 6285 * 7706 * * * 5245 5241 6294 5440 80 0 * * * * * 0 6110 0 1000 N 81 4865 5199 1479 4132 * 4853 3653 * 5166 5038 4568 2751 * 5544 6615 3064 6870 * * * 81 0 * * * * * 0 6117 0 1000 K 82 6037 6604 3152 4962 1435 6239 5892 7223 4591 6312 4813 5453 6695 2695 5320 4008 4392 * * 6395 82 0 * * * * * 0 6120 0 1000 L 83 6304 * * * 4730 * * 6004 * 285 4026 * * * * * * 4271 * * 83 31 5558 * 1585 585 * 0 6120 1000 1000 L 84 * 6558 * * 1766 5418 * 2328 * 1842 5171 * * * 4867 * * 3335 * 4931 84 34 * 5415 * * * 0 5799 0 1000 G 85 4086 * 2990 4440 * 3148 4189 * 1639 6204 * 3342 * 4267 4718 4105 5623 * * * 85 110 6093 4086 0 * 412 2008 5777 1000 1475 R 86 4910 * 2464 * 4848 2321 3994 4089 4112 5571 5510 3312 * 5178 3026 4680 5755 5670 * * 86 31 * 5562 * * 674 1422 5735 0 1946 V 87 3808 5760 * * * 4252 5455 3006 * 4113 * * * * * * 3394 928 4968 * 87 0 * * * * 1220 809 5471 0 1783 T 88 4723 4268 * * * * 5987 2829 * 4897 * * 2325 * * * 1119 4053 * * 88 61 5250 6034 2322 322 * 0 5194 1000 1380 I 89 * 5639 4792 * * * * 605 5059 3449 * * * * 5125 5644 * 3108 * * 89 0 * * * * 1887 455 5191 0 1537 A 90 1800 5407 * 4576 * * 5038 * 4767 * * * 2657 5075 5182 1815 3640 * * * 90 0 * * * * 661 1445 5143 0 1380 Q 91 5108 * * 3027 * 2760 3849 * * * * 3940 5643 2013 3944 2393 * * * 4538 91 0 * * * * * 0 5158 0 1000 G 92 5665 * * * * 233 * * * * * * * 4394 6436 4421 * 5403 * * 92 48 * 4938 * * * 0 4639 0 1000 G 93 5070 * 5175 * * 309 * * * * * * * 3969 4404 * 5374 * * * 93 42 5122 * 2585 263 * 0 4414 1000 1344 V 94 4311 * * * * 5002 * * * * 4249 * * * 4816 * 3271 461 * * 94 0 * * * * 1300 752 4344 0 1344 L 95 * * * * 5570 * * 2451 3491 1465 5194 * 5265 2937 * * 5170 2907 * * 95 0 * * * * * 0 4295 0 1000 P 96 * * * * * * * * 5265 5372 * * 275 * * 3020 * * * * 96 49 4910 * 0 * * 0 4295 1000 1000 N 97 * 5156 * * 4063 * 2300 4813 3037 * * 2578 4988 * 2925 3391 5170 * * 3350 97 0 * * * * * 0 3772 0 1000 I 98 * * * * * * * 516 * 3247 * * 4932 * * 3792 4941 4107 * * 98 0 * * * * * 0 3695 0 1000 Q 99 3666 * * * * * 936 * * 3989 * 3039 * 2468 4922 * * * * * 99 0 * * * * 0 * 3715 0 1000 A 100 3313 4440 * 4204 * * * * 2050 * * * 1293 4900 3825 4459 * * * * 100 0 * * * * * * 3770 0 0 V 101 2344 * * 2478 * * * 4742 4816 * * * 4863 5294 * 1754 * 2363 * * 101 0 * * * * * * 3507 0 0 L 102 * * * * * * * * * 72 4365 * * * * * * * * * 102 77 4264 * 2807 222 * * 3200 1000 0 L 103 * * * * 4110 * * 5172 * 129 * * * * * * * * * * 103 0 * * * * * * 3016 0 0 P 104 2094 * * * 4148 3805 * * 3959 4848 * * 1029 * * 4359 * * * * 104 0 * * * * * * 2687 0 0 K 105 * * * * * * * * 328 * * * * * 2296 * * * * * 105 0 * * 0 * * * 2589 0 0 //