HHsearch 1.5 NAME c2em3A_ FAM FILE c2em3A_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2em3A_.a3m DATE Thu Mar 11 07:21:29 2010 LENG 46 match states, 46 columns in multiple alignment FILT 117 out of 11924 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.3 EVD 0.5310 2.6552 SEQ >ss_dssp CCCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCCC >sa_dssp EEEEEEEEEEEEDDBEEDEECBEEEDECCEBEEECEDEEEEDEEEE >ss_pred CCCCCCCCCCCCEECCCCCCEECCHHHCCEEEEECCCCCCCCCCCC >ss_conf 9876121587424637165800343431300220078845647896 >Consensus ghxxrxHtxekpxxCxxCxkxFxxxxxLxxHxxxHxgxkpxxCxcG >c2em3A_ GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG >UniRef50_B7PCQ8(595-638:784) Zinc finger protein, putative n=1 Tax=Ixodes scapularis RepID=B7PCQ8_IXOSC E=9e-08 s/c=1.32 id=30% cov=93% ---TRTHTAVRSHVCPVCGRAFIERSHLVRHERIHLDDKPFkCPDC- >UniRef50_Q9TYX3(556-600:909) EOR-1 n=3 Tax=Caenorhabditis RepID=Q9TYX3_CAEEL E=0.0007 s/c=1.00 id=30% cov=100% -HHVASHNDPRPYICEDCGFATKTADHLSLHRRQHTGDNFSCHIAG >UniRef50_Q17BA2(603-648:731) Putative uncharacterized protein n=1 Tax=Aedes aegypti RepID=Q17BA2_AEDAE E=3e-05 s/c=1.08 id=30% cov=100% -HIANVHLEIRPHKCHICPRQFGSKLSLQKHQANHTGERPYKCtQCG >UniRef50_UPI000180CFB8(376-422:499) PREDICTED: similar to growth factor independent 1 n=1 Tax=Ciona intestinalis RepID=UPI000180CFB8 E=5e-07 s/c=1.18 id=30% cov=102% GQHKASHNREKVFECHICHKTFKRSSTLSTHLLIHSDTRPFPCpYCG >UniRef50_B0X3S3(516-557:676) Zinc finger protein n=1 Tax=Culex quinquefasciatus RepID=B0X3S3_CULQU E=0.0007 s/c=1.07 id=21% cov=85% ------HSAKREFMCTICGQSYMQRHNLQAHMLMHEGKLPFECE-- >UniRef50_C3Z6L7(223-268:290) Putative uncharacterized protein n=3 Tax=Branchiostoma floridae RepID=C3Z6L7_BRAFL E=0.0004 s/c=1.00 id=26% cov=100% -HTTRRHSGERPYACPLCDYRGALKVDVDRHMVRHTDLKSHQCElCG >UniRef50_D0ABA3(387-428:455) Putative Zn finger protein n=1 Tax=Heliconius melpomene RepID=D0ABA3_9NEOP E=4e-06 s/c=1.25 id=28% cov=87% -----IHSDVKTFSCDVCGMSFVRSGYLKNHMISHTKEKRYQCQ-- >UniRef50_Q16MU4(228-272:474) Putative uncharacterized protein n=3 Tax=Aedes aegypti RepID=Q16MU4_AEDAE E=5e-05 s/c=1.09 id=27% cov=98% -HNQQIHSGPTPHVCNICGKRFRDFDTMEQHRQRHlMKDKPFKCSE- >UniRef50_B6SS63(123-165:539) Nucleic acid binding protein n=2 Tax=Andropogoneae RepID=B6SS63_MAIZE E=0.0003 s/c=1.07 id=27% cov=96% -HFCRKH-GEKKWKCDKCSKKYAVQSDWKAHVKTC-GSREYRCDCG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 4368 0 0 S 2 6134 * * 5267 * * 449 * 4726 * * * * 5003 * 3507 5505 5323 * 5431 2 0 * * * * * * 5800 0 0 S 3 6003 5327 * 5688 5440 5983 1911 2939 4755 3911 4816 3900 4712 3957 * 4601 4049 3400 * * 3 0 * * * * * * 5809 0 0 G 4 3283 4789 * 5919 * 3209 * 4883 2568 5497 4430 4816 * 2763 3271 3772 4088 4410 * * 4 0 * * * * * * 5841 0 0 S 5 3902 * * 6687 * * 6805 3961 3635 * 6203 5767 5958 5608 891 3522 5168 4411 * * 5 0 * * * * * * 6257 0 0 S 6 4973 * * * 4810 5973 6709 2049 4602 4627 5168 6552 * 5658 4041 2630 2408 3329 * 6036 6 9 7263 * 2322 322 * * 6371 1000 0 G 7 * * * * * 6138 237 * * 5939 * 5123 5906 6203 4955 6526 * * * 5739 7 18 * 6352 * * * * 6408 0 0 T 8 5685 6776 6764 4731 7051 4620 4847 5305 * 4462 4845 3869 6089 4900 5469 2443 1353 5531 * * 8 16 6534 * 0 * 0 * 6399 1000 1000 G 9 4000 * 3429 3031 * 1427 * 6301 4099 6142 6991 4029 6525 4863 4494 4673 4566 5875 * 6945 9 19 * 6220 * * * * 6418 0 0 E 10 5532 * 3381 1181 4831 4965 * 4280 3889 5391 6497 4816 4634 5497 4902 5262 * 3992 * * 10 0 * * * * 0 * 6401 0 1000 K 11 6988 5261 * 6343 * * 5948 * 937 6344 6147 4570 6761 7293 1790 5360 7030 6683 * * 11 0 * * * * * * 6418 0 0 P 12 5617 * 5951 6317 * 6673 * 5744 4069 4832 * 4160 935 4876 3559 3795 4287 7253 * * 12 21 6088 * 1806 486 * * 6418 1535 0 Y 13 6888 6301 6012 * 1702 * 2673 * 6997 4771 * 6220 * 6794 * * 6529 * 5437 1327 13 0 * * * * * * 6418 0 0 E 14 4547 5697 6362 3436 6878 6779 4720 4412 1828 5624 7308 5412 5449 3164 4847 3798 4312 3215 * * 14 0 * * * * * * 6418 0 0 C 15 * 144 * * 5354 6205 * * * * * * * * * 4690 * * * 5770 15 0 * * * * * * 6418 0 0 K 16 5773 * 2705 2914 * 5637 4989 7440 3791 6991 * 3125 2828 4085 5122 2726 3967 * * * 16 0 * * * * * * 6418 0 0 V 17 6535 6706 4152 3180 5025 * 3987 3298 3545 3375 6517 6756 * 2757 6014 6549 5704 2995 6003 3624 17 42 5112 * 1000 1000 * * 6418 2272 0 C 18 * 83 * * * * * * * * * * * * 5714 5744 * * 5770 * 18 0 * * * * * * 6418 0 0 S 19 6017 * 3004 3999 7467 1417 4766 * 5854 4561 * 4154 3222 6535 5790 3395 5541 * 6362 * 19 0 * * * * * * 6418 0 0 K 20 4218 7043 7376 4569 6475 6608 * 6343 1140 5269 4512 5597 * 4458 2670 4920 * 5795 * 4082 20 0 * * * * * * 6418 0 0 A 21 2439 3783 * 5282 5994 4422 5969 4972 4094 6039 * * 5607 4420 3385 2484 2702 4720 * * 21 0 * * * * * * 6418 0 0 F 22 6636 5442 * * 484 6968 * 6220 * 4217 6706 * * * * 6673 4796 6017 6908 3355 22 0 * * * * * * 6418 0 0 T 23 3695 6506 6851 * 7176 4850 6004 5325 2821 6176 6808 4682 3932 5229 3404 2598 2666 3698 * 4988 23 0 * * * * * * 6418 0 0 Q 24 5428 6220 4290 7487 6235 6344 3369 6799 5559 4475 * 5399 * 3086 2413 3849 3076 4709 3449 4011 24 0 * * * * * * 6418 0 0 K 25 3811 5354 * 6406 4820 7115 * 5074 2234 4824 * 3441 3171 3446 3135 3108 5816 6820 6525 6608 25 0 * * * * * * 6418 0 0 A 26 4236 4828 4344 4413 5365 3723 4117 5185 5818 * * 4491 * 5951 4613 1605 3389 5314 5414 4697 26 0 * * * * * * 6418 0 0 H 27 3927 7156 3065 4755 * 6644 2455 7247 5651 6181 6525 2615 5551 3831 5479 2857 4529 4747 * 4989 27 0 * * * * * * 6418 0 0 L 28 * 6263 * * 3739 * 5473 6619 6904 476 4963 * * 7016 5161 * * 4885 5597 5062 28 0 * * * * * * 6418 0 0 A 29 3886 6322 4495 5471 * 6960 5823 4107 2421 6604 5376 3876 * 3499 3002 3986 3103 3868 6608 6878 29 0 * * * * * * 6418 0 0 Q 30 4604 6344 5556 3353 6808 6619 * 3786 2945 3866 6619 4714 * 4137 2139 4383 4173 3566 6502 7282 30 0 * * * * * * 6418 0 0 H 31 * * * * * * 48 * * * * 5843 * * * * * * * 6012 31 50 4885 * 0 * * * 6418 2356 0 Q 32 6636 * * 3162 5069 * * 5533 2808 2983 2401 * * 2712 3316 5857 5829 3636 * * 32 0 * * * * * * 6418 0 0 K 33 4654 * 6023 6525 5537 5744 * 5273 2563 3654 4599 4664 7080 4574 1425 6989 4579 4619 * 5237 33 28 5676 * 0 * * * 6418 2033 0 T 34 5647 * * 6534 6360 6511 6204 2190 4214 3662 6598 * * 5135 3284 3124 2738 2670 6930 6754 34 0 * * * * * * 6413 0 0 H 35 * 6358 6015 * * * 116 * * * 6396 5842 * * * * * * * 5624 35 41 7026 5621 0 * * * 6413 1000 0 T 36 3766 6791 5042 5811 5699 4345 5616 6016 5629 3874 4289 4528 * 5554 6222 2327 1591 5933 * * 36 36 5337 * 976 1024 0 * 6387 2022 1561 G 37 5433 * 4101 3548 * 1145 6746 * 3445 6814 * 4021 5122 6354 3391 4580 6399 5678 * * 37 0 * * * * * * 6413 0 0 E 38 4252 * 2857 1573 6517 5512 * 5966 3176 4861 5764 4233 * 4285 4373 6783 4204 4473 * * 38 10 7242 * 0 * * * 6413 1000 0 K 39 5162 6698 5844 4398 * 6316 * * 1198 5851 5580 5210 6623 4483 1920 5119 5426 * * 6295 39 9 * 7266 * * * * 6404 0 0 P 40 5519 * 7067 5565 5382 * 5752 5726 4967 4401 6457 5169 832 6741 4015 4896 4075 5501 6503 6553 40 38 5284 * 0 * * 0 6391 1826 1000 S 41 * 6261 6276 5156 2153 * 2633 5025 5519 5618 * 5573 6348 7158 5771 5821 * * * 1283 41 8 7428 * 0 * 0 * 6389 1000 1000 G 42 3985 3237 * 3497 5060 5320 * 5057 1999 6602 5684 6146 3850 3533 3943 3846 5155 4482 * * 42 0 * * * * * * 6393 0 0 P 43 6492 283 7093 * * * 6431 * * 6269 * * 3325 * * 6531 6256 * 6474 * 43 146 3379 * 0 * * * 6374 3527 0 S 44 * * 2174 2424 6627 6162 * 5319 4848 * * 3161 5826 2893 * 2371 4633 * * 6582 44 541 1678 * 130 3532 * * 6342 4254 0 S 45 5486 622 * 2360 * 5928 * * 5494 * * * * * * 3679 * 5925 * * 45 0 * * * * * * 5999 0 0 G 46 * * * * * 0 * * * * * * * * * * * * * * 46 0 * * 0 * * * 5330 0 0 //