HHsearch 1.5 NAME c2em0A_ FAM FILE c2em0A_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2em0A_.a3m DATE Tue Mar 9 15:46:07 2010 LENG 46 match states, 46 columns in multiple alignment FILT 109 out of 11673 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.1 EVD 0.5407 3.1828 SEQ >ss_dssp CCCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC >sa_dssp EEEEEEEEEEEEDEBEDCEDECEECEDBEECCEECEDEECDEEEEE >ss_pred CCCCCCCCCCCCEECCCCCCCCCCHHHHCCCEEHHCCCCCCCCCCC >ss_conf 9878888751756766368600174552212240178875997985 >Consensus gxxxxshxGekpyxCxxCxkxFxxxxxLxxHxxxHtxekPxxxxCg >c2em0A_ GSSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG >UniRef50_UPI0001792C36(141-182:344) PREDICTED: similar to novel zinc fingerprotein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792C36 E=0.0006 s/c=1.07 id=29% cov=91% -SCKNTNSSEMKYECEFCEKVFIYKSQLKIHSRKHTAEKPYK---- >UniRef50_C3ZFQ6(389-431:912) Putative uncharacterized protein (Fragment) n=2 Tax=Branchiostoma floridae RepID=C3ZFQ6_BRAFL E=0.0009 s/c=1.04 id=28% cov=70% --------GEKPYNGEECSRQLSDLNSMQKHKIHHTRKR------- >UniRef50_Q6AX11(302-348:980) Znf420 protein n=4 Tax=Xenopus RepID=Q6AX11_XENLA E=5e-05 s/c=1.04 id=29% cov=89% ASVQSDPTAEKPFTCTECGKTFTRKGTFDKHQKIYTWENP------ >UniRef50_B4M421(391-430:576) GJ10853 n=2 Tax=Drosophila RepID=B4M421_DROVI E=2e-05 s/c=1.26 id=28% cov=85% -------MKKKPFVCDVCGKRVRTVSELKEHMLVHTEDRPFvCPLC- >UniRef50_Q5SXI5-3(233-283:429) Isoform 3 of Zinc finger protein 496 n=2 Tax=Eutheria RepID=Q5SXI5-3 E=0.0002 s/c=0.91 id=28% cov=100% -QSNASAEGEvqtsqKSYVCPNCGKIFRWRVNFIRHLRSRREQKPHKCSvCG >UniRef50_P39933(72-114:429) Transcription factor IIIA n=9 Tax=Saccharomycetaceae RepID=TF3A_YEAST E=0.0004 s/c=1.07 id=30% cov=80% ----SVHQGLRAFQCDKCAKSFVKKSHLERHLYTHSDTKP------ >UniRef50_Q4RFH8(710-755:857) Chromosome 8 SCAF15119, whole genome shotgun sequence n=2 Tax=Tetraodontidae RepID=Q4RFH8_TETNG E=0.0004 s/c=1.00 id=28% cov=70% --------GSKPFMCKICNFATAQLGDARNHVKRHLGMR------- >UniRef50_B0WYY4(489-532:618) Zinc finger protein 544 n=2 Tax=Culex quinquefasciatus RepID=B0WYY4_CULQU E=0.0002 s/c=1.06 id=28% cov=93% ---GLAHTGERPLKCPYCPARFAREACRISHVRTHTGKKDFpCPQC- >UniRef50_Q7YU81(303-335:1214) Protein charlatan n=3 Tax=Drosophila RepID=CHN_DROME E=0.001 s/c=1.36 id=29% cov=67% ----------KRYACTHCPYSTDRRDLYTRHENIHKDEKP------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 2418 * * * * 299 * * * * * * * * * * * * * * 1 0 * * * * * * 3831 0 0 S 2 1903 * 4343 * * * 4314 * * 4465 * * * 3281 * 1343 3462 * * * 2 0 * * * * * * 4670 0 0 S 3 3600 4730 4775 * * * 1597 4560 4783 * * 4640 4655 * * 2208 3580 4206 * * 3 0 * * * * * * 4860 0 0 G 4 4872 * * * * 1178 * * 2885 * 4995 2399 5109 4415 * 4036 * 5015 * * 4 0 * * * * * * 4983 0 0 S 5 3031 * * * * 5478 * * 1849 5336 * 3817 4094 * 4011 1684 5469 5178 * * 5 0 * * * * * * 5579 0 0 S 6 3963 5796 4921 5360 * 5479 * * 3439 5463 5484 4194 * 4360 5133 1253 3020 5248 * * 6 0 * * * * * * 5644 0 0 G 7 3371 * * * * 3487 894 * * * * 4437 3081 * 5429 4377 4629 * * * 7 0 * * * * * * 5644 0 0 M 8 5826 * 5942 5042 4374 4969 * 4787 4794 2770 3276 3867 5002 4159 * 2987 2061 6392 * * 8 0 * * * * * * 5882 0 0 G 9 4765 5783 5344 * * 400 * * 4466 * 6517 5082 5365 * 5580 4971 * * * * 9 0 * * * * * * 6268 0 0 E 10 5435 * 3487 1082 5693 5007 6226 4910 3928 5672 * 6499 * 4286 4355 4696 4906 4326 * * 10 48 4938 * 1610 572 * * 6505 2123 0 K 11 5158 * 6378 6662 6211 7325 * 6869 878 6464 4886 5493 6762 6035 1932 * 6290 * * 6514 11 0 * * * * * * 6551 0 0 T 12 4514 6368 * 5907 7228 6378 * 5188 4402 4488 6935 6005 879 5691 3999 3349 4882 6947 * * 12 0 * * * * * * 6551 0 0 W 13 * 6656 6128 * 1780 * 2967 * * 4827 * 6286 * * * 6041 6290 * 5357 1132 13 0 * * * * * * 6551 0 0 K 14 3688 * 6023 3414 * * 4990 5719 2161 5801 5891 5027 5477 2833 3095 4711 3863 3800 * 6041 14 0 * * * * * * 6551 0 0 C 15 6012 142 * * 6024 6153 * * * * * * * * * 4948 * * * 5911 15 22 6064 * 1000 1000 * * 6551 1624 0 R 16 * * 2282 3050 6211 5341 5628 * 2858 5259 * 4266 3890 3771 4184 2937 3927 7105 * * 16 0 * * * * * * 6551 0 0 E 17 4459 * 5108 2840 4718 5767 3611 2699 4138 4050 5393 5861 * 3498 7008 5412 4948 3721 6041 3437 17 60 4608 * 1000 1000 * * 6551 2439 0 C 18 * 105 * * * * * * * * * * * * * 5132 * * 6023 5261 18 0 * * * * * * 6551 0 0 D 19 5642 * 2642 4095 * 1321 5322 * 4467 6021 * 4059 3300 5936 5435 4518 6072 * 5980 * 19 0 * * * * * * 6551 0 0 M 20 5351 * * 5060 4986 6553 6423 * 833 5907 5327 6465 * 4460 3026 * * * * 3192 20 0 * * * * * * 6551 0 0 C 21 2471 3879 5704 4801 6695 4019 * 5861 4273 4815 6464 4861 7024 4685 3067 2880 3104 4401 6679 * 21 0 * * * * * * 6551 0 0 F 22 4344 5068 * * 632 6919 * 6662 * 4047 * * * * * 4442 4499 * * 3229 22 0 * * * * * * 6551 0 0 S 23 3233 6041 6176 * 6665 3993 5564 3957 3645 6741 5096 4147 5283 5633 2975 2268 3643 4603 * 5072 23 14 6665 * 0 * * * 6551 1000 0 Q 24 6368 5740 4523 5025 4904 4970 3858 * 5780 4243 5528 4650 * 2702 2958 3822 3135 7049 3644 3761 24 0 * * * * * * 6551 0 0 A 25 4942 * 6464 4846 5423 7160 6473 6769 2000 3671 5183 3957 3733 4046 3193 2992 4791 * * 4532 25 0 * * * * * * 6551 0 0 S 26 3539 6943 4344 5005 5566 3408 4380 5475 3851 6720 6299 4817 6636 4702 3791 2081 4346 4311 5396 4949 26 12 6940 * 0 * * * 6551 1000 0 S 27 3354 5308 3464 5567 * 5896 2728 5379 5999 4457 6669 2910 * 5098 5880 2533 3886 4572 6286 5163 27 0 * * * * * * 6551 0 0 L 28 6525 6548 * * 3393 * 6128 4357 * 678 3744 * * * 5307 * * 4729 5337 4927 28 0 * * * * * * 6551 0 0 R 29 3876 * 5534 3787 * * 4819 3443 2702 5522 5133 4466 6906 4112 3178 4176 3186 3986 6553 4455 29 0 * * * * * * 6551 0 0 L 30 4473 * 4017 4126 * * 5144 3914 2834 5745 6869 4499 * 3559 2320 3623 4863 3324 6769 5637 30 0 * * * * * * 6551 0 0 H 31 * * * * * * 92 * * 6076 * * * * 5880 * * * * 5075 31 16 6509 * 0 * * * 6551 1689 0 Q 32 6428 6808 * 3108 5999 * * 3978 3108 3169 2615 * * 2517 3662 5435 5348 4192 6290 5316 32 10 7192 * 0 * * * 6551 1000 0 N 33 5165 5573 * 5815 7080 5452 6475 4799 2429 3316 5000 4892 * 4818 1461 5927 5474 4878 5941 5880 33 14 6736 * 0 * * * 6551 1000 0 V 34 5269 5553 * * 5229 5496 5218 2100 4643 3746 6628 4591 * * 3998 3564 2485 2798 * 6931 34 33 5463 * 0 * * * 6557 1478 0 H 35 * * * * * * 86 * * * * * * 6069 5861 * * * * 5277 35 26 6500 7260 0 * * * 6557 1000 0 V 36 3865 * * 5299 6995 * 5157 6400 4636 4469 5988 4871 * * 4972 2660 1021 5638 6918 6413 36 12 * 6930 * * 0 * 6558 0 1000 G 37 4439 6821 3648 3353 * 1226 6726 * 3558 6120 * 4134 * 5697 4227 4251 5405 6366 6227 * 37 0 * * * * 0 * 6553 0 1000 E 38 5626 * 2691 1072 6204 7173 * 4994 3669 5004 5229 5584 * 4318 6459 6742 4700 5030 * * 38 30 5590 * 0 * * * 6560 1523 0 K 39 * * 6526 6364 * 5571 * * 1039 6457 5556 6216 * 4627 1615 6399 5520 * * 5464 39 0 * * * * * * 6552 0 0 P 40 5862 * 6416 * 5514 * 5637 6135 * 6563 * 5999 210 * * 6316 * * * 6416 40 0 * * * * * * 6164 0 0 S 41 * 5425 * 5568 2950 * 2235 * 4890 * * * * * 3492 4437 5606 * * 1236 41 395 2157 6055 0 * * * 5537 3440 0 G 42 * 1476 * * * 4153 * * 1036 * * * * * 4462 5694 4970 * * * 42 0 * * * * * 0 5531 0 1000 P 43 * 1943 4917 * * * * * 4862 5010 * 4306 1175 3752 * 4853 * * * 4682 43 0 * * * * 0 * 4974 0 1000 S 44 * * 4467 3879 * 4891 * 3984 4514 * * 4950 4944 3700 * 1483 4337 2615 * 4885 44 280 2502 * 0 * * * 4972 2233 0 S 45 * 211 * 4706 * * * * * * * * * * * 3355 * * * * 45 0 * * * * * * 4967 0 0 G 46 * * * * * 0 * * * * * * * * * * * * * * 46 0 * * 0 * * * 4108 0 0 //