HHsearch 1.5 NAME c2ekiA_ FAM FILE c2ekiA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2ekiA_.a3m DATE Thu Mar 11 22:00:27 2010 LENG 93 match states, 93 columns in multiple alignment FILT 106 out of 240 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4045 -0.6666 SEQ >ss_dssp CCCCSSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECCSCCCC >sa_dssp EEEEEEEEEEEBEABCCDEEEEBCDEECCEACDDEBCADCAADEEDEDBDEDBECACACCECBEEEDDEBDDECEACDEACACBBEDEEEEEE >ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC >ss_conf 986642002679998727998777557738737898899999988399862212799737455555513047528158998999923687789 >Consensus xxxxsxxxLxlIrVYtkxxgxxxDxxxpiilxpxGsTvxDfAxxIHtdigxxxxxAxVxGxsxxxxxqxVxldxxLxdgDvVeIitxxxxsxg >c2ekiA_ GSSGSSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKSGPSSG >UniRef50_C7DI20(291-366:366) Small GTP-binding protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI20_9EURY E=0.0006 s/c=0.60 id=32% cov=83% --------LSIMRVYLKPRAK--ENPEPIIVK-SGCTVGLLARKLHTEILNDLKCAYINGPSVKFRNQRVGVNHILAEGDTITFIKE------ >UniRef50_B8D6C7(324-410:410) Predicted GTPase n=10 Tax=Thermoprotei RepID=B8D6C7_DESK1 E=5e-13 s/c=0.87 id=31% cov=87% -------KLGLIVVYPvEDENKFTDHHGNILpdayLVPRNTTARELAYMIHTELGEGFLYA-VNARSKR----RIGEDYVLENNDIIKIVAVKSRSS- >UniRef50_D1B915(270-359:363) GTP-binding protein YchF n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B915_THEAS E=1e-07 s/c=0.64 id=31% cov=84% --SGAYSLLGLISFFT----CGPDEVRAWTL-KDGASAVDAAGAIHSDLARGFIKAQVvsYEDYASHGFSITacreagclrleGKDYRVKDGDVIEI--- ------ >UniRef50_C9RKY5(373-456:715) (P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKY5_FIBSS E=5e-15 s/c=0.98 id=26% cov=84% --SDSKEYLDFLKVDLKPEGMTVFTPKGAsVELPEGAIVLDFAFAVHTELGLHCIGARINDK-------VVSLDEPVPHGATIQILK------- >UniRef50_B5YCU8(252-326:328) GTP-binding protein n=2 Tax=Dictyoglomus RepID=B5YCU8_DICT6 E=8e-15 s/c=1.09 id=30% cov=82% --------LHIVRVYTKKPGYPPDLSRPYIL-EKGSKVLDVAEMVHKDIAKNMKFAKLYTKDGSVKGLPVEKNYEVKDEDILEF--------- >UniRef50_Q1NL98(395-477:736) GTP diphosphokinase n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NL98_9DELT E=1e-15 s/c=1.02 id=29% cov=84% GSDESASYQNMIatsgrkEIYTYTPKGE------LIMLPAESIVLDFAFKIHTDIGKRCVSAMV-------GQQKVDPEYVLQDGEQVSIITHKEP--- >UniRef50_C7H6M7(435-502:767) GTP diphosphokinase n=6 Tax=Clostridiales RepID=C7H6M7_9FIRM E=3e-12 s/c=1.07 id=25% cov=55% ----------------------------------GATCIDFAYAIHSAVGNRMVGCKVNNR-------MVPIDHIVSTGEIIEVIlgpADKGPS-- >UniRef50_B4WUV8(191-266:543) TGS domain protein n=3 Tax=Synechococcus sp. PCC 7335 RepID=B4WUV8_9SYNE E=6e-12 s/c=0.95 id=25% cov=78% ---------DTITVYT-------SLDKPITIKR-GSTPVDFAYKIHTELGHSCYRAKVTRNYGQGPENweiiECELSFMLENGDKVEIIKRDG---- >UniRef50_B5HF73(445-499:697) PpGpp synthetase/hydrolase n=12 Tax=Streptomyces RepID=B5HF73_STRPR E=1e-05 s/c=0.92 id=25% cov=22% --------------------------------------------------------------------------VLGDGDTVHVLLAQDAASG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1724 0 0 S 2 * * * * * * * * * * * * * * * 319 2333 * * * 2 0 * * * * * * 1983 0 0 S 3 * * 1917 * * * * * * * * * * * * 444 * * * * 3 0 * * * * * * 2682 0 0 G 4 * * 1188 2921 * 1221 * * * * * * * * * * * * * * 4 0 * * * * * * 2682 0 0 S 5 2238 * * * * * * * * * * * * * * 344 * * * * 5 0 * * * * * * 2682 0 0 S 6 3134 * * * 3099 * * * 1928 * * 3234 * * * 2298 * * * 2344 6 0 * * * * * * 2784 0 0 G 7 3493 * * 2261 * 1474 * * * * * * * * * 1546 * * * * 7 0 * * * * * * 3019 0 0 Y 8 * * * 4307 * * 3722 * 1539 2845 * * * * * * * * * 1357 8 0 * * * * * * 3710 0 0 L 9 * * * * * * * * * 132 * * * 5078 5214 * * 5013 * * 9 0 * * * * * * 4588 0 0 K 10 5060 * 2374 2569 * 1426 4797 * 5537 * * 3291 * 5233 5463 5189 * * * * 10 0 * * * * * * 4793 0 0 L 11 5489 * 5344 * 2951 * * 2555 * 1386 3235 5593 * * * * 5173 3105 * * 11 0 * * * * * * 4808 0 0 V 12 * 5688 5996 * 4933 * * 538 * 5137 4126 * * * * * 5505 3086 * 5790 12 52 4824 * 2585 263 * * 4899 1355 0 R 13 4147 * * 4430 5140 5276 5729 4533 4125 6030 * * * 5911 946 4318 4633 4095 * 5391 13 45 5035 * 2286 331 * * 4907 1308 0 I 14 * * * * 4336 * * 1995 * 5491 * * * * * * * 562 * * 14 0 * * * * * * 4919 0 0 Y 15 * * 5223 * 2323 * 5484 * * * * * * * * * * * * 413 15 17 6413 * 0 * * * 4919 1000 0 T 16 6348 * 5779 * * 5934 * * * 3284 4460 * 2793 * * 5834 760 4248 * * 16 399 4190 2421 0 * * * 4919 1716 0 K 17 5556 * 4955 4553 3455 * * * 839 5658 * * * * 3777 * 6079 3214 * 4710 17 113 5558 4214 0 * 810 1219 4763 1000 2917 P 18 4626 * 4084 3247 * * * * 3115 * * 4482 1657 5573 4291 4876 2532 4687 * * 18 0 * * * * * 0 4768 0 2496 K 19 * * 3937 3261 * 5453 * * 1752 * * 5659 1469 5628 3549 * * 5377 * * 19 50 * 4869 * * * 0 4768 0 2496 G 20 3926 * * 3890 * 924 5335 * 2869 * 5700 3157 * * * * 4422 * * * 20 40 * 5199 * * 1749 509 4735 0 2994 Q 21 * 4115 4868 2640 * 2248 5445 * 2319 6364 5090 * * 5762 3814 4358 3678 5463 * 4920 21 257 * 2614 * * 2370 310 4821 0 2737 L 22 4496 * * 2941 4324 3082 5328 4161 2369 3875 * * 2541 * 5301 5066 4775 5114 5478 * 22 166 * 3205 * * * 0 4704 0 3337 P 23 2963 * * * 5218 * 4968 4588 * 3525 * 5270 1388 * * 5207 3617 2853 5084 * 23 63 * 4557 * * 1482 639 4585 0 3441 D 24 * * 586 3500 4675 * * * * * * * 5256 5525 * 5104 3678 5391 * 5180 24 38 * 5252 * * 2971 197 4766 0 2953 Y 25 * * 5246 3537 2523 5157 5362 * 5445 2591 5363 3129 5181 5535 4862 4528 3593 4229 * 3824 25 0 * * * * 2468 288 4716 0 2987 T 26 * * 2449 2618 * 3707 5425 * 3328 * * 5534 3581 4287 5577 3510 2952 4051 * * 26 0 * * * * * 0 4726 0 2848 S 27 3958 * 2733 2461 * 4437 4791 * 1820 * * 4562 * * 2511 5623 * * * * 27 66 5324 5686 2322 322 1946 434 4726 1000 2848 P 28 2867 * 2779 * * 3005 * 5687 5514 * * 5549 1031 * 4622 * * * * * 28 0 * * * * 287 2473 4826 0 2755 V 29 4527 * * * 3396 * * 2122 * 2153 4317 * 6002 * * * * 1901 4459 5155 29 63 5037 6332 1223 807 1022 978 4850 1605 1305 V 30 * * * * 5201 * * 998 * 4315 6024 * * * 5964 * 2884 2053 * 6133 30 76 4865 5860 2000 415 * 0 4834 1716 1493 L 31 4093 6116 5654 3270 6026 6782 * 3325 6024 1371 3312 * * 6815 6033 5826 3922 3862 * * 31 241 * 2703 * * 1180 840 4834 0 1806 P 32 * * 5982 * * * * 6160 3381 1364 2869 * 3802 * 2832 4164 4207 5224 * * 32 130 4557 4516 1821 480 276 2523 4714 1634 3442 Y 33 * * * 4207 * * * * 2564 * * * 1123 * 1934 6310 * * * 4533 33 157 * 3281 * * 786 1251 4830 0 2100 S 34 3202 * 4246 3084 6290 4118 * * 2182 5044 * 5913 * 3542 2725 3301 * 4818 * 6781 34 54 * 4769 * * 176 3125 4822 0 3038 R 35 * * 4831 4881 * 362 6547 * * * * 4204 * * 3952 * 5436 * * * 35 121 4507 4771 2070 392 526 1710 4858 1821 1913 T 36 1592 4710 5514 5528 * * * 5943 * * * 6138 * 4988 * 1094 4387 6916 * * 36 0 * * * * 0 * 4767 0 2012 T 37 * 7035 * * * * * 5351 4871 * 6767 4076 6384 * * 3174 492 5002 * * 37 0 * * * * * * 4821 0 0 V 38 2376 6188 * * * * * 5529 * 5369 7833 * 2667 * * 6794 6116 830 * * 38 0 * * * * * * 4821 0 0 E 39 5201 * 5515 3381 * 4543 5493 2581 4414 1528 5093 * * * 4276 * * 2756 * * 39 0 * * * * * * 4841 0 0 D 40 5892 * 298 4036 * * 5712 * * 5830 * 5595 * * * 6047 6048 * * 5548 40 0 * * * * * * 4840 0 0 F 41 3900 * * * 1013 * * * * 2063 6545 * * * * * * 2725 * 4781 41 0 * * * * * * 4840 0 0 C 42 366 3088 * * * * * * * 5892 * * * * * 6989 * 3611 * * 42 0 * * * * * * 4840 0 0 M 43 6311 * 5159 3736 2592 4092 5712 * 3969 6631 6697 4324 * 5046 4602 4805 * * * 1322 43 28 * 5681 * * * * 4840 0 0 K 44 2081 * 6016 5121 6424 * 6696 5524 2027 4087 3874 5988 * 4583 2903 3891 5316 * * 5614 44 0 * * * * * 0 4824 0 1227 I 45 6147 * * * * * * 874 * 3199 * * * * * * * 1691 * 5517 45 0 * * * * 0 * 4824 0 1227 H 46 * * * * * 4974 185 * * * * 4631 * * * 5125 * * * 5681 46 0 * * * * * * 4840 0 0 K 47 6112 * * 4972 * 5516 6029 * 2826 4869 * * 5269 * 3477 1837 1532 * * * 47 0 * * * * * * 4840 0 0 N 48 4842 * 1176 2486 6206 * 6701 * 4032 * * 5368 * 3911 4710 3381 5516 * * 6264 48 0 * * * * * * 4840 0 0 L 49 6498 * * * 4183 * * 1643 * 1355 4622 * * * * * 5595 2630 * * 49 0 * * * * * * 4840 0 0 I 50 2584 * 5516 4844 * 903 * 4193 5033 3949 * * 6614 * 5301 6891 * 4852 * 6264 50 0 * * * * * * 4840 0 0 K 51 6294 7619 2676 2900 7492 * 3560 * 2417 3538 * 2299 * 5198 4166 5301 * 6890 * 6942 51 0 * * * * * * 4840 0 0 E 52 6144 6883 3278 4922 6663 3861 2910 * 3112 * 6757 3001 * 3622 2608 3785 4157 * * 7407 52 0 * * * * * * 4840 0 0 F 53 2624 2278 * * 1440 * * * * 3610 3626 * * * * * 3943 6144 * 5573 53 30 * 5595 * * * * 4840 0 0 K 54 5418 * * * * * * 2867 1895 3323 5130 5172 * 5856 3207 4578 5460 2424 5588 5855 54 0 * * * * 0 * 4811 0 1000 Y 55 4149 5830 6497 5360 2897 1799 4651 * 4514 * * * * 5761 4259 3805 6876 * * 2091 55 0 * * * * * * 4840 0 0 A 56 153 5221 * * 6863 5290 * 6437 * * * * * * * 6123 * 6193 * * 56 96 6098 4320 3170 170 * * 4840 1000 0 L 57 * * * 6187 * * * 3814 1466 2657 5542 * * 5300 2164 * 6268 4060 * 4276 57 77 * 4268 * * 712 1361 4823 0 2086 V 58 6329 * 5899 * * * * 2169 * 4730 * * * * * * * 493 * * 58 68 5908 5075 1000 1000 * 0 4770 1000 2153 W 59 * * 3614 * 5496 4952 * * * 5869 * 1175 * * * 5619 4543 * 1731 4672 59 62 * 4572 * * * 0 4751 0 2768 G 60 4724 * 5805 4927 * 455 * * * * * 4092 * * 3497 6346 5493 * * * 60 177 * 3113 * * * 0 4749 0 2933 L 61 6022 * 5502 5258 * * * 5501 1440 4521 * 3351 3882 6330 2479 4581 3777 5068 * * 61 346 * 2230 * * 1842 472 4710 0 3512 S 62 5823 * 3714 4876 5158 5682 5124 4576 5824 5895 * 4320 5152 * 5119 1297 3393 4456 5898 4382 62 191 5827 3232 0 * 2183 359 4694 1000 3384 V 63 1928 5817 3471 4627 5943 3528 * * 4518 4737 6086 * * * 4133 3945 5460 2235 * 4920 63 174 * 3140 * * * 0 4707 0 3281 K 64 2830 5558 * 5717 * * * 5471 1669 5671 * * 2619 3647 3223 3725 * 4752 * * 64 249 * 2658 * * 3448 139 4665 0 3413 H 65 * * * * 2269 4138 1965 3651 5257 3295 * 5515 * * 3157 * * 3879 * 3834 65 30 * 5585 * * 3686 117 4526 0 3595 N 66 4445 * 3127 5489 * 3026 * * 3715 * * 3553 3144 3633 3776 2635 3585 * 5493 * 66 0 * * * * 2812 222 4619 0 3477 P 67 5355 * 4287 4311 5266 1768 * * 3342 * * 3065 2059 5331 5989 4168 * * * * 67 157 * 3275 * * 2794 225 4696 0 3435 Q 68 6239 * * 3314 * 5431 * 5960 4812 4486 3832 5224 * 750 4974 4524 * * * * 68 39 5224 * 2000 415 1198 826 4702 1000 3655 K 69 6346 5826 * 4621 * * * 2880 4109 3145 3080 * 5386 3514 1574 * 5944 5009 * 6684 69 0 * * * * 1788 493 4779 0 3454 V 70 5495 4714 * * * * * 3687 5130 4011 6583 * * * 6661 * 5060 496 * 6346 70 30 5613 * 3459 138 1775 499 4728 1000 3202 G 71 4369 * 3907 4576 * 1383 * * * * * 5421 1880 6281 5065 3412 5163 * * * 71 19 * 6229 * * 917 1088 4762 0 2977 K 72 5019 * * 5001 4963 5962 * 3516 2832 984 6263 * 4390 * 3869 6806 * 5760 * * 72 22 6033 * 1585 585 794 1240 4796 1000 2426 D 73 6630 * 1237 5673 6579 4817 5535 * 4520 6174 * 2757 * 5695 4124 2666 5320 * 6958 7387 73 0 * * * * * 0 4828 0 1850 H 74 * * 6713 4839 4548 * 1474 * 6764 * * * * 4512 4678 4974 2684 * * 1871 74 0 * * * * 0 * 4828 0 1850 T 75 5760 * 7175 3758 * * * 3250 2828 4238 5867 * 2946 4730 3293 7128 5214 1831 * * 75 0 * * * * * * 4840 0 0 L 76 * * * * 5744 * * 5179 * 282 5709 * * * * * * 3154 * * 76 0 * * * * * * 4840 0 0 E 77 4273 5709 4798 2581 * 5913 3707 6289 2289 6537 4978 4617 6222 2454 4218 4193 * 5781 * 6668 77 0 * * * * * * 4840 0 0 D 78 * * 1214 4650 * * 3591 6598 * * * 1904 * 6453 * 3441 4190 * * 6597 78 0 * * * * * * 4840 0 0 E 79 4533 * 5497 2572 * 781 * * 4472 * * 4733 * 6148 4132 * 6387 6929 * 6544 79 0 * * * * * * 4840 0 0 D 80 6222 * 267 4599 * * * * * * * * * 3414 * 5591 * * * * 80 0 * * * * * * 4840 0 0 V 81 * * * 6628 6429 * * 1877 5186 * 6088 5616 * 4448 4184 6980 2757 1371 * * 81 0 * * * * * * 4840 0 0 I 82 6162 5765 * * * * * 1957 * 4179 * * * * * * * 611 * * 82 0 * * * * * * 4840 0 0 Q 83 * 6162 5549 1007 5589 * 5229 6544 3388 * * 5181 * 3118 4081 4449 3928 * * * 83 0 * * * * * * 4840 0 0 I 84 * * * * 4690 * * 446 * 3610 * * * * * * * 2783 * * 84 26 * 5833 * * * * 4839 0 0 V 85 5437 * * * 4405 * * 1254 * 3207 4404 * * * * * 6185 1623 * 5941 85 38 5922 6676 1249 788 * 0 4623 1469 1000 K 86 3433 * * * * * * 6075 2403 5143 * * * * 5692 2563 1039 * * * 86 14 6678 * 1585 585 811 1218 4585 1000 1549 K 87 3096 * 4508 3957 * 6766 5071 * 2615 * * 5707 * 4520 2923 2413 2833 4678 * 6530 87 0 * * * * 0 * 4537 0 1000 S 88 3482 * 4591 4049 * 6042 * * 1053 * * 5004 5792 6977 4765 3027 3398 * * * 88 99 3911 * 1396 690 * * 4117 1515 0 G 89 3128 * 4825 4652 * 811 5603 * 5465 5514 * 4248 * * * 3332 * * * 5412 89 0 * * * * * * 3733 0 0 P 90 3768 * 5044 * * * * * 4249 4631 * * 1062 2887 2613 5285 * * * * 90 0 * * * * * * 3334 0 0 S 91 5534 * * 4859 * 4763 3359 * * * * 3925 * * * 658 3185 * * * 91 0 * * * * * * 3210 0 0 S 92 2529 * * * * * * * 3724 * * * * 2880 * 875 * * * 3834 92 0 * * * * * * 2923 0 0 G 93 * * * * * 0 * * * * * * * * * * * * * * 93 0 * * 0 * * * 2732 0 0 //