HHsearch 1.5 NAME c2ec3A_ FAM FILE c2ec3A_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2ec3A_.a3m DATE Tue Mar 9 15:24:44 2010 LENG 68 match states, 68 columns in multiple alignment FILT 23 out of 27 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.8 EVD 0.4340 0.3021 SEQ >ss_dssp CCCCCCCCCCCSCCSCSSCBCSSSCCBCTTCEEEEECSSSSEEEEEEEETTTTEEEEEECCCCCCCCC >sa_dssp EEEEEEEEEEEEEEEDDEDBEDEEEEBEECDEBEDEBEEDDDCBACADAEEEBDCDCDEEEEEEEEEE >ss_pred CCCCCCCCCEEEEEEECCEEEECCEEEEECCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEECC >ss_conf 98767666427998431214107728970765886526898799999438731147533243013059 >Consensus xxxxxxxGxGxxxCxsxxxCxdnGxxYrIgdxWxkxxxxGxxlxCtCxGnGrGewkCxpxxexCxdxg >c2ec3A_ GSSGSSGGSGHFRCDSSRWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDG >UniRef50_Q58XP5(478-530:2500) Fibronectin 1b n=11 Tax=Clupeocephala RepID=Q58XP5_DANRE E=2e-07 s/c=1.07 id=44% cov=74% -------------------CTVNDVMYRVGDEWDKRHDTlGHMMRCTCQGNGRGEWNCISHTQLkdqCVVNG >UniRef50_Q58XP5(557-613:2500) Fibronectin 1b n=11 Tax=Clupeocephala RepID=Q58XP5_DANRE E=7e-05 s/c=0.85 id=38% cov=82% -------GRGRWKCDAIDQCQepETKVFYQIGQTWNKVIQ-GTPYRCSCYGNGIGEMACEPLQST----- >UniRef50_P02751(502-563:2386) Ugl-Y3 n=174 Tax=Euteleostomi RepID=FINC_HUMAN E=3e-18 s/c=1.50 id=34% cov=87% -------GRGEWTCIAysqlRDQCIVDDITYNVNDTFHKRHEEGHMLNCTCFGQGRGRWKCDPVDQ-CQD-- >UniRef50_P02751(219-276:2386) Ugl-Y3 n=174 Tax=Euteleostomi RepID=FINC_HUMAN E=1e-17 s/c=1.57 id=39% cov=84% -------GSGRITCTSRNRCNDQDtrTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSV----- >UniRef50_P02751(565-603:2386) Ugl-Y3 n=174 Tax=Euteleostomi RepID=FINC_HUMAN E=3e-09 s/c=1.61 id=37% cov=56% ---------------------ETGTFYQIGDSWEK-YVHGVRYQCYCYGRGIGEWHCQP--------- >UniRef50_C3ZFJ5(35-92:125) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZFJ5_BRAFL E=1e-07 s/c=0.99 id=40% cov=74% -------------------CTANGQTYQIGQQWYMTNQAGYMLICTCEGNGQGHYSCsasnNPANERCVYEG >UniRef50_Q58XP5(57-103:2500) Fibronectin 1b n=11 Tax=Clupeocephala RepID=Q58XP5_DANRE E=0.0002 s/c=1.01 id=38% cov=66% -------------------CNDNGRVYRMNDEWERPY-MDSTLKCTCEG--ASGVKCRSkpaAEESCYD-- >UniRef50_Q4SHU0(150-211:1395) Chromosome 5 SCAF14581, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4SHU0_TETNG E=4e-19 s/c=1.54 id=45% cov=91% ------SGRGKISCTIANRCHEGGRSYKIGDTWKRPHETaDYMLECVCLGNGKGEWTCKPVAERCYDN- >UniRef50_Q6DD34(52-99:215) Atp2b1b protein n=2 Tax=Xenopus laevis RepID=Q6DD34_XENLA E=2e-07 s/c=1.19 id=43% cov=68% -------------------CYDNGKYYQINQQWERTY-LGNTLVCTCYGGGR-VFNCESkpeSEETCFD-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1000 0 0 S 3 * * * * * * * * * * * * * * * 0 * * * * 3 0 * * * * * * 1000 0 0 G 4 * * * * * 0 * * * * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 S 5 * * * * * * * * * * * * * * * 0 * * * * 5 0 * * * * * * 1000 0 0 S 6 * * * * * * * * * * * * * * * 0 * * * * 6 0 * * * * * * 1000 0 0 G 7 2179 * * * * 1509 * * * * * * * * * 1225 * * * * 7 0 * * * * * * 1534 0 0 G 8 * * * * * 0 * * * * * * * * * * * * * * 8 0 * * * * * * 2627 0 0 S 9 * * * * * * * * 3982 * * 3862 * * 994 1450 * * * * 9 0 * * * * * * 2627 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 2627 0 0 H 11 * * * 2009 * * 2203 * 2959 * * * * * 1301 * * * * * 11 0 * * * * * * 2627 0 0 F 12 * * * * 2203 * * 1301 * * * * * * * * * * 1407 * 12 0 * * * * * * 2627 0 0 R 13 * * * * * * * * 2960 * * 3534 * * 2203 1865 1769 * * * 13 0 * * * * * * 2627 0 0 C 14 * 0 * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 2627 0 0 D 15 * * 1533 * * * * 2624 * * * * * * * 3698 1605 3534 * * 15 0 * * * * * * 2627 0 0 S 16 1783 * * * * * * 2409 * * * * * * * 940 * * * * 16 412 2009 * 2114 379 * * 2627 1300 0 S 17 1865 * * * * * * 2960 3534 * * * * * 1769 2203 * * * * 17 0 * * * * * * 2627 0 0 R 18 * * 1407 * * * * * 2756 * * 1301 * * 3855 * * * * * 18 0 * * * * * * 2627 0 0 W 19 * * * * * * * * * * * * * 1407 1301 * * * 2203 * 19 0 * * * * * * 2627 0 0 C 20 * 0 * * * * * * * * * * * * * * * * * * 20 0 * * * * * * 3187 0 0 H 21 * * * 4051 * * 1983 3324 * * * 2222 * 3439 * * 2997 4271 * 3277 21 140 3439 * 1000 1000 * * 3187 1000 0 D 22 3784 * 1214 1714 * * * * * * * * * * * * * 2383 * * 22 0 * * * * * * 3264 0 0 N 23 * * 3388 * * 3225 * * * * * 1239 * 2863 * 3371 2840 * * * 23 0 * * * * * * 3264 0 0 G 24 * * 2269 * * 469 * * 3834 * * * * * * * * * * * 24 196 2978 * 1000 1000 * * 3208 1260 0 V 25 * * * * * * * 2964 3490 * * 3590 * 2797 2314 * 2747 2280 * * 25 0 * * * * * * 3208 0 0 N 26 4469 * * * 2865 * 4358 * * * 3262 3013 * * * 2488 2234 3963 * 3543 26 0 * * * * * * 3208 0 0 Y 27 * * * * * * 4636 * * * * * * * * * * * * 59 27 0 * * * * * * 3189 0 0 K 28 * * 4578 4523 * * * * 3410 * * 4600 * 1682 1097 * * * * * 28 0 * * * * * * 3189 0 0 I 29 * * * * * * * 569 * 4121 3923 * * * * * * 2303 * * 29 0 * * * * * * 3189 0 0 G 30 * * * * * 599 * * * * * 1558 * * * * * * * * 30 0 * * * * * * 3189 0 0 E 31 * * 1174 1738 * * * * * * * * * 1959 * * * * * * 31 0 * * * * * * 3189 0 0 K 32 * * * 2784 * * * * 2651 * * * * 2064 * 3351 1480 * * * 32 0 * * * * * * 3189 0 0 W 33 * 4277 * * 2982 * * * * * * * * * * * * * 283 * 33 0 * * * * * * 3189 0 0 D 34 * * 1959 1649 * * 4600 * 4892 * * 4055 * * 5065 3028 3787 * * 3969 34 0 * * * * * * 3189 0 0 R 35 * * * * * * 4760 * 811 * 3969 * * * 1602 * * * * * 35 81 * 4204 * * * * 3189 0 0 Q 36 * * * 4143 * * * 4628 4486 4286 * * 2258 3352 2255 * 2631 2954 * * 36 0 * * * * 0 * 3247 0 1000 G 37 4277 * 3017 * * 3891 1633 4055 * 4515 * 3969 * * * * * * * 1903 37 346 * 2230 * * * * 3189 0 0 E 38 * * 2188 1537 * * 4271 * * * * 4277 * 2657 * 3257 * 3850 * * 38 188 4339 3778 0 * 0 * 2831 1000 1610 N 39 3866 * * 3501 * 4583 4026 * * 2703 3367 2482 * 4542 4491 3511 2885 * * * 39 252 3243 4187 0 * 0 * 3119 1572 1000 G 40 * 4232 3333 * * 239 * * * * * * * * * * * * * * 40 44 5066 * 0 * 0 * 3208 1000 1000 Q 41 * * * * * * 2092 * * * * 2930 * 3891 * 3019 3267 4204 * 1810 41 0 * * * * * * 3189 0 0 M 42 4342 * * * * * * * * 2944 1263 * 4055 * 3351 * 2025 * * * 42 0 * * * * * * 3189 0 0 M 43 * * * * * * * * * 907 1697 * * * * * * * * 2660 43 0 * * * * * * 3189 0 0 S 44 * * * 3448 * * * 3969 3923 * * 2982 * 2198 2575 3071 * 2765 * * 44 0 * * * * * * 3189 0 0 C 45 * 0 * * * * * * * * * * * * * * * * * * 45 0 * * * * * * 3189 0 0 T 46 * * * * * * * 4591 * 4731 * * * 4495 * 4055 674 3448 * 3351 46 0 * * * * * * 3189 0 0 C 47 * 0 * * * * * * * * * * * * * * * * * * 47 85 * 4121 * * * * 3189 0 0 L 48 * * * 2739 2904 * * * * 1700 * * * 4741 * * 3587 5087 * 1949 48 0 * * * * * 0 3145 0 1000 G 49 * * * * * 0 * * * * * * * * * * * * * * 49 126 * 3584 * * 0 * 3145 0 1000 N 50 * * * * * 3394 * * * * * 483 * 2908 4158 * * * * * 50 0 * * * * * 0 3092 0 1000 G 51 4423 * * * * 150 * * * * * * * * * 4262 * * * * 51 0 * * * * 0 * 3092 0 1000 K 52 3019 * * * * * * 2660 2247 * * * * 3969 1172 * * * * * 52 59 * 4630 * * * * 3189 0 0 G 53 4043 * * * * 199 * * * * * * * * * 3868 * * * * 53 91 * 4038 * * 0 * 3185 0 1000 E 54 * * * 684 * 2962 3918 * * * * * * * 2936 * * 4251 * * 54 0 * * * * 0 * 3157 0 1000 F 55 * * * * 2261 * * 4121 * * 3267 * * * * * * 3923 1000 3969 55 0 * * * * * * 3189 0 0 K 56 4055 * * * * * 4204 * 1022 * * 2994 * * * 2758 3062 * * * 56 0 * * * * * * 3189 0 0 C 57 * 0 * * * * * * * * * * * * * * * * * * 57 102 3867 * 2000 415 * * 3189 1000 0 D 58 * * 2191 1534 * * * 4477 2628 * * 3857 * 3378 3969 * * * * * 58 0 * * * * * * 3295 0 0 P 59 3373 * * * * * * * * * * * 972 * 2910 2301 4121 * * * 59 371 2139 * 1585 585 * * 3295 1613 0 H 60 2411 * * * * * 1654 3529 * 2926 * * * * * 4408 * 2127 * * 60 0 * * * * * * 3252 0 0 E 61 2714 * 2041 1946 * 4117 * * * * * 3061 * 3756 * * 3418 * * * 61 0 * * * * * * 3252 0 0 A 62 2959 * * 1311 * * * * * * * * * 2366 * 1866 * * * * 62 95 * 3971 * * * * 3252 0 0 T 63 * * * * * * * 3755 4191 3573 * * * * 2367 2695 1768 2782 * * 63 158 3268 * 1585 585 0 * 2981 1000 1000 C 64 * 0 * * * * * * * * * * * * * * * * * * 64 0 * * * * * * 2749 0 0 Y 65 * * * * 2271 * * * * * * * * 3246 * * * 2308 * 1042 65 0 * * * * * * 2749 0 0 D 66 * * 325 * * * * * * * * * * * * * * 3424 * 3201 66 0 * * * * * * 2749 0 0 D 67 * * 1449 2293 * * * * * * * 1219 * * * * * * * * 67 0 * * * * * * 2214 0 0 G 68 * * * * * 0 * * * * * * * * * * * * * * 68 0 * * 0 * * * 2029 0 0 //