HHsearch 1.5 NAME c2e8mA_ FAM FILE c2e8mA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2e8mA_.a3m DATE Wed Mar 10 02:01:19 2010 LENG 99 match states, 99 columns in multiple alignment FILT 49 out of 53 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4010 -0.4823 SEQ >ss_dssp CCSSCSSCCCCSCCCCCCSCCCSCCCCCCCCTTCCTTHHHHHHHHHTCCHHHHHHTSSSCHHHHHHCCHHHHHHHCTTHHHHHHHHHHHHHHHSSSCCC >sa_dssp EEEEEEDEEEEEEEEEEEEEEEEEEEECDADDECEDEDADEAADDDECCCEABECABEDDACDAADBEDEDAEEDBEDACEACDDADEBCEEDEEEEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 988888887766788887678788875088888889999999997399999999850689899951789999997015899999999999843221169 >Consensus xxxxxxxtxgxxxxxxxxxixxxxxxsvxLxxxSspxEVxxWLxxkgFSxxtvxxlxxlsGaxLlxLtKeeLxxvCxEGxRlysqLxvqkxxlxxxxxg >c2e8mA_ GSSGSSGTIGRSAAQKKFHVPRQNVPVINITYDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALSGPSSG >UniRef50_B3S5L2(814-899:1305) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S5L2_TRIAD E=1e-06 s/c=0.63 id=33% cov=77% --------------------NRNEVGSINP--NSSKEEIRQYLTERNFSAKTTDLLGDYGGFELLSLTKEELAQIAPgEENRLHSLLTTQRSQLPDEQ-- >UniRef50_C3YG11(502-569:571) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YG11_BRAFL E=4e-17 s/c=1.31 id=28% cov=69% -------------------ISRSPIHNAALDKSYSAKEVAKWMKKHGFSRSSIDAFQGLDADRLHGLTKREMEIVCPeEGARLYNLI------------- >UniRef50_C4Q5Z9(690-759:771) Eps8-related protein n=1 Tax=Schistosoma mansoni RepID=C4Q5Z9_SCHMA E=6e-11 s/c=0.98 id=24% cov=64% ----------------PIPSTTLDKPDQRLSKYASKEEVAEWLVAHQFSPKAISALKGFKGIDLYTMNRTQLEQhVGPE--------------------- >UniRef50_Q4RVS1(469-555:557) Chromosome 9 SCAF14991, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4RVS1_TETNG E=3e-21 s/c=1.17 id=37% cov=87% ------------SSSSPVEEQWSPRGAVTLDMNSTPPEVKAWLEHKGFSRITVNTLGVLTGKLLLGMTKEEIRTVCPeEGSKVFFQLQTTKSAMAVSQ-- >UniRef50_Q12800(296-381:502) Alpha-globin transcription factor CP2 n=102 Tax=Euteleostomi RepID=TFCP2_HUMAN E=1e-19 s/c=1.13 id=24% cov=86% -SSHSSFSLGEGNGSPNHQPEPPPPVTDNLLPTTTPQEAQQWLHRNRFSTFT-RLFTNFSGADLLKLTRDDVIQICgpADGIRLFNAL------------ - >UniRef50_A8K2J6(480-559:563) cDNA FLJ78157 n=5 Tax=Catarrhini RepID=A8K2J6_HUMAN E=3e-16 s/c=1.08 id=36% cov=81% ---GTPGTQGQSPSRVPM-----------LRLSSRPEEVTDWLQAENFSTATVRTLGSLTGSQLLRIRPGELQMLCPqEAPRILSRLEAVRRML------ >UniRef50_Q95TJ6(586-681:712) CG8907 n=13 Tax=Drosophila RepID=Q95TJ6_DROME E=3e-15 s/c=0.86 id=34% cov=71% -------------------------PEIFITQNSKPSEVEEWLRGKGFSDIIIKRLHTLSGEEIFALSPHTIESYFgrRESRRLISQIVLQKNFCE---- - >UniRef50_UPI0000E46276(396-480:575) PREDICTED: similar to transcription factor CP2 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E46276 E=1e-13 s/c=0.91 id=27% cov=65% -------TPDRSPAQTNNHV-LSPEVSVaetlsPLYPHFTAAQTQEWLKQQRFENY-CKPFQNFSGADLLRLAKEDL----------------------- ---- >UniRef50_UPI0001926E3E(470-541:687) PREDICTED: similar to epidermal growth factor receptor pathway substrate 8 n=1 Tax=Hydra magnipapillata RepID=UPI0001926E3E E=2e-12 s/c=1.02 id=32% cov=67% ---------------------------IPLYKSSTADDVSRWLHKLGFSDRTIDILRGKTALELFKINKEDLVDLIgkDEGSQLHEELQVQNGA------ - # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1685 0 0 S 3 * * * * * * * * * * * * * * * 0 * * * * 3 0 * * * * * * 1685 0 0 G 4 * * * * * 670 1429 * * * * * * * * * * * * * 4 0 * * * * * * 2050 0 0 S 5 * * * * * * * * * * * * * * * 476 1831 * * * 5 0 * * * * * * 2050 0 0 S 6 * * * * * * * * * * * * 1831 * * 476 * * * * 6 0 * * * * * * 2050 0 0 G 7 * * * * 1429 670 * * * * * * * * * * * * * * 7 0 * * * * * * 2050 0 0 T 8 * * * * * * * * * * * * * * * 2466 288 * * * 8 0 * * * * * * 2813 0 0 I 9 * * * * * * * 2309 * 1780 * 3281 2623 2928 * 3179 * * * * 9 0 * * * * * * 2813 0 0 G 10 * * 3306 * * 154 * * * * * * * * * * * * * * 10 0 * * * * * * 2882 0 0 R 11 * * * 2199 * * * * 2511 * * * * 3296 986 * * * * * 11 92 * 4011 * * * * 2982 0 0 S 12 2392 * * * * 2816 * * * * * * * * 3560 1132 2986 * * * 12 0 * * * * 0 * 2949 0 1000 A 13 2359 * * * * 3060 * * * * * 2190 2051 3323 * 3726 4350 * * * 13 0 * * * * * * 3088 0 0 A 14 2507 * * * * 3098 * * 4177 3424 * 4434 1708 * * 2276 * * * * 14 0 * * * * * * 3113 0 0 Q 15 4277 * * * * * * * * * * 4595 * 1424 2872 1502 * 4485 * * 15 0 * * * * * * 3113 0 0 K 16 * * * * * * * * 1839 * * * 2568 4015 2031 3806 3580 3470 * * 16 0 * * * * * * 3113 0 0 K 17 4323 * * * 4794 * 4815 * 2643 * * 1362 1819 * 4447 * * * * * 17 0 * * * * * * 3625 0 0 F 18 * * * * 2368 * 3371 3394 * 2682 2761 3720 * * * * 3581 3264 * 4392 18 152 4794 3972 0 * * * 3625 1000 0 H 19 * * * 4093 * * 2280 * * * * 4486 2381 3275 2122 * 4525 3030 * * 19 0 * * * * * 0 3530 0 1000 V 20 * * * 4272 * 3356 * 1642 * * * * 3360 * * 3502 4831 1693 * * 20 110 * 3772 * * * 0 3703 0 1000 P 21 * * * 1851 * * 4948 * * * * 2978 1784 3093 * 3552 3822 * * * 21 0 * * * * 810 1219 3396 0 1549 R 22 * * * * * * * 3908 3344 4169 * * 3011 4711 1072 5213 3926 * 4365 * 22 0 * * * * * 0 3487 0 1000 Q 23 3513 * * * * 5590 * * * 3580 2910 3653 4067 3669 3494 1538 5369 * * * 23 49 * 4892 * * * 0 3722 0 1000 N 24 4163 * 3152 2895 * * * * * * * 3700 1550 3125 4138 3219 * * * * 24 0 * * * * * 0 3704 0 1433 V 25 3035 * 2199 2989 * * * 3050 4140 * * * 3098 * 3723 * 4079 3250 * * 25 43 * 5075 * * * 0 3704 0 1433 P 26 * * * * * 3126 3951 * * * * * 1526 * * 3991 2527 2812 * 3397 26 0 * * * * 1341 724 3923 0 1714 V 27 3191 * 3659 3035 * * 5295 * * * * 3176 * 5080 4285 1405 3793 5463 * * 27 0 * * * * * 0 3928 0 1433 I 28 3062 * 4583 4773 * * * 1726 * 4307 * * * 2793 * * * 1714 * * 28 47 4978 * 2322 322 * 0 3988 1000 1433 N 29 3394 * 4996 * 3893 * 4202 * 5135 * * 2433 1874 4879 3929 4656 4136 5210 * 4563 29 0 * * * * 0 * 3951 0 1433 I 30 * * * * * * * 1947 * 577 * * 3835 * * * * * * * 30 76 * 4292 * * * * 4077 0 0 T 31 * * 2524 * * 5453 * * * 5212 4303 2723 * * 4483 2990 1577 * * 3870 31 0 * * * * * 0 3998 0 1000 Y 32 * * 3908 4750 5040 * * * 2361 4483 4534 * 2214 2903 5778 3676 * * * 2860 32 0 * * * * 0 * 3998 0 1000 D 33 * * 2684 2296 * 4790 4095 * 3506 * * 2946 * 4836 * 2465 4625 * * 3806 33 0 * * * * * * 4119 0 0 S 34 3167 * * * 5581 * * * * * 4465 * * * * 458 4262 * * 4557 34 0 * * * * * * 4082 0 0 T 35 * * * * * 5173 * * 4342 * * 4245 3821 5807 3046 1409 1816 * * * 35 19 * 6256 * * * * 4082 0 0 P 36 2454 5605 * * * * * 3583 3633 * * * 764 5202 5885 * * * * * 36 0 * * * * * 0 4089 0 1000 E 37 2670 * 3417 1524 5783 4987 * * 4541 5069 * * 5741 3791 4622 3117 5877 6045 * * 37 0 * * * * 0 * 4089 0 1000 D 38 * * 2772 573 * * * * * * * * * 2738 * 4991 * * * * 38 0 * * * * * * 4082 0 0 V 39 5594 * * * * * * 4374 * 4991 * * * * * * 2567 452 * * 39 0 * * * * * * 4082 0 0 K 40 2945 * * 4018 * 6253 5807 * 2828 * * * * 2184 2610 4090 2366 * * * 40 0 * * * * * * 4082 0 0 T 41 2225 * 4039 2982 * * * * 3980 5293 5889 3285 * 2283 3506 6317 4016 5467 * * 41 0 * * * * * * 4082 0 0 W 42 * * * * * * * * * * * * * * * * * * 71 4374 42 0 * * * * * * 4082 0 0 L 43 * * * * 5538 * * * * 95 4557 * * * * * * * * * 43 0 * * * * * * 4082 0 0 Q 44 4991 5359 * 3042 * * 3193 * 2912 4620 5538 5807 * 2472 3104 * 2933 3775 * * 44 0 * * * * * * 4082 0 0 S 45 1974 * * 3622 4627 4002 4239 4948 2716 * * 3586 * 3773 4055 4563 * 4991 * 4900 45 0 * * * * * * 4082 0 0 K 46 * * * 4778 * * 2380 * 1139 4704 * 2800 * 5581 4374 3913 * * * * 46 0 * * * * * * 4082 0 0 G 47 4068 * 4948 * * 1049 * * * * * 2944 * 4983 2042 5620 * * * * 47 0 * * * * * * 4082 0 0 F 48 * * * * 175 * * * * 3762 * * * * * * * * * 4627 48 67 * 4465 * * * * 4082 0 0 N 49 * * 4112 5417 * 4701 5458 * * * * 3715 * * * 443 4444 * * * 49 0 * * * * 0 * 4084 0 1125 P 50 2574 * 3544 3196 * * * * 3735 * * 3504 2811 4901 3103 3091 3958 * * * 50 0 * * * * * * 4103 0 0 V 51 5151 * * * 4593 6326 5628 2818 3079 5061 5953 3847 4560 3944 3277 3972 5809 4992 * 2333 51 299 6341 2515 1000 1000 * * 4103 1000 0 T 52 3877 * * 4888 * * * 2536 * 3981 * * * * * 4413 830 4246 * * 52 218 * 2834 * * 0 * 3940 0 2270 V 53 * 2910 * * * * * 1971 * 3220 5267 * * * * * 4270 1229 * * 53 0 * * * * 0 * 4053 0 1739 N 54 4229 * 2163 2841 * * 5953 * 2633 * * 4502 * 4223 2536 3276 4920 * * * 54 0 * * * * * * 4103 0 0 S 55 3223 3066 * * * * * 4716 4989 3134 4742 4312 5603 4660 4390 3185 2026 6152 * 5329 55 0 * * * * * * 4103 0 0 L 56 * * * * 1520 * * * * 618 * * * * * * * * * * 56 0 * * * * * * 4103 0 0 G 57 2767 * 4940 * * 1296 4390 * 3224 * * 5864 * 4016 3479 4398 4560 * * * 57 0 * * * * * * 4103 0 0 V 58 5474 * 3516 * * 2169 5517 3090 * * * 2242 * 4301 * 4350 4390 2559 * * 58 0 * * * * * * 4103 0 0 L 59 * * * * 1675 * * * 4716 1031 4660 * * 4940 * * * 5892 * 3830 59 0 * * * * * * 4103 0 0 N 60 3527 * 3447 * * 4373 * * 5035 * * 2720 * 5914 * 1887 1717 * * * 60 0 * * * * * * 4048 0 0 G 61 3312 * * * * 153 * * * * * * * * * * * * * * 61 0 * * * * * * 4048 0 0 A 62 1265 5370 4100 4378 4373 5591 4992 5035 5802 4709 * 5315 4936 * 5447 2817 5163 5989 * * 62 0 * * * * * * 4048 0 0 Q 63 * * 1569 2525 * * * * * 5802 4858 3967 * 1734 4583 * 5036 * * * 63 0 * * * * * * 4048 0 0 L 64 * * * * * * * 2124 * 420 5413 * * * * * * * * * 64 0 * * * * * * 4048 0 0 F 65 * * * * 1244 * 4583 * * 1108 4586 * * * * * * * * 5035 65 0 * * * * * * 4048 0 0 S 66 4378 * 4992 5914 * 3222 * * 3270 * * 4672 * 5447 1802 1673 5035 * * * 66 0 * * * * * * 4048 0 0 L 67 * * * * * * * 3909 * 513 2105 * * * * * * * * * 67 0 * * * * * * 4048 0 0 N 68 4492 * * * * 5447 4992 * 5841 * * 2408 * 6329 4503 2216 1239 * * * 68 0 * * * * * * 4048 0 0 K 69 * * * 4672 * * * * 710 * * * 3331 * 1999 * * * * * 69 0 * * * * * * 4048 0 0 D 70 5315 * 2260 1290 * 4647 4378 * * 4943 * 5605 * 4310 3267 4992 5035 * * * 70 0 * * * * * * 4048 0 0 E 71 * * 1469 1130 * * 4943 * * * * * * 3305 * * 4378 * * * 71 0 * * * * * * 4048 0 0 L 72 * * * * 5989 * * 3583 * 292 4583 * * * * * * 4569 * * 72 0 * * * * * * 4048 0 0 R 73 4360 4976 * 2360 * * * 2456 2817 4388 * * * 2987 2713 * * 3754 * * 73 0 * * * * * * 4031 0 0 T 74 3321 * 4686 * * * * 3958 3368 5298 3914 * * 1375 * 3377 2985 * * * 74 45 5020 * 0 * * * 4031 1000 0 V 75 4938 * * * * * * 1422 * 3346 * * * * * * * 1295 * 3503 75 0 * * * * * * 4031 0 0 C 76 4360 514 * * 3503 5020 * 3970 * 5417 * * * * * 4473 * * * * 76 1114 894 * 807 1223 * * 4031 3488 0 P 77 1868 * 3034 3998 * 4290 * * 4923 * * * 1287 * 4394 * * * * * 77 728 1336 * 121 3637 * * 3978 2886 0 E 78 * * 1992 418 * * * * * * * * * * * * * * * * 78 15 6568 * 0 * * * 3978 1000 0 G 79 4210 * * 4277 * 242 * * * * * * * * * 4360 * * * * 79 0 * * * * * * 3935 0 0 A 80 2017 * * * * 2760 * 2004 * 4254 * 4277 3892 * 4360 3036 * 6164 * * 80 0 * * * * * * 3935 0 0 R 81 * * * * * * * * 3469 * * * * 4586 259 * * * * 4952 81 0 * * * * * * 3935 0 0 V 82 * * * * 5318 * * 4210 * 1030 3732 * * * * * * 1491 * * 82 0 * * * * * * 3935 0 0 Y 83 * * * * 1676 * 2912 4360 * 4210 * * * * * * * * * 1147 83 0 * * * * * * 3935 0 0 S 84 * * * 3774 3894 * * * * 5840 * 1501 * * * 1084 * * * 5857 84 0 * * * * * * 3935 0 0 Q 85 2397 * * 4555 * * * * * 3275 * * 5184 969 4131 4348 5654 * * * 85 0 * * * * * * 3859 0 0 I 86 * * * * * * * 2104 4955 563 * * * * * * * 4101 * * 86 56 * 4711 * * * * 3859 0 0 T 87 * * * 4045 * * * * * 2863 3247 4023 * 2393 * 4961 1526 3937 * * 87 0 * * * * * 0 3346 0 1000 V 88 3933 * * * * * * 3000 * 2894 5480 4903 * * * * 2792 1074 * * 88 0 * * * * 0 * 3316 0 1000 Q 89 3956 * * * * * * 4846 * * * * * 456 * * 4904 2850 * * 89 0 * * * * * * 3261 0 0 K 90 * * * * * * * * 833 * * 3797 * 4683 1609 * * * * * 90 0 * * * * * * 3261 0 0 A 91 1666 * * * * 3131 * * * * * 3576 * * 4178 1368 * 4503 * * 91 0 * * * * * * 3174 0 0 A 92 1867 * * * 2810 * * * * 2592 3324 * * 2373 * 4641 3931 5736 * * 92 0 * * * * * * 3036 0 0 L 93 * 3348 * * * * * 2576 * 761 4362 * 4465 4316 * * * * * * 93 0 * * * * * * 2868 0 0 S 94 3982 * * 789 * * * * * * * * 3225 3141 * 3633 4132 * * * 94 0 * * * * * * 2813 0 0 G 95 2368 * 1402 3709 * 4940 * * 3684 * * * * 4954 4510 3724 * 3486 * * 95 0 * * * * * * 2520 0 0 P 96 2471 * * 2992 * 3996 * * 3959 * * * 2568 2381 * 2277 * * * * 96 0 * * * * * * 2614 0 0 S 97 4453 * * 3959 * * * * 3943 * * 3996 * 1459 3043 2409 3493 * * * 97 0 * * * * * * 2614 0 0 S 98 3376 * * * * 1818 * * * * 2309 2662 * * * 1942 * * * * 98 0 * * * * * * 2088 0 0 G 99 * * * * * 0 * * * * * * * * * * * * * * 99 0 * * 0 * * * 1964 0 0 //