HHsearch 1.5 NAME c2e44A_ FAM FILE c2e44A_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2e44A_.a3m DATE Wed Mar 10 03:05:05 2010 LENG 96 match states, 96 columns in multiple alignment FILT 110 out of 4689 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.8 EVD 0.4119 -0.0687 SEQ >ss_dssp CCCCCCSCCCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCCSCC >sa_dssp EEEEEEEEEEEEDEDECACADCBAEECEDEDADDCAEEBBECEDCEECECEDEBCBABABBEDDECAEDACDEAEDDECDECEADBDDCEDEEEEE >ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHCCCEEECCEEEEEEECCCCCCCC >ss_conf 988876668877883289982688898999999964247881489996113557816999922157578887509356088489998258643479 >Consensus GsxxxxxxxxxxxxxxxlxVxNLpxxxtexdlxxxFxxxGxixxvxxxxxxxxxxxaxVxfxxxxxAxxAixxlngxxxxgxxlxVxxxxdxxxxx >c2e44A_ GSSGSSGSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEMAAQ >UniRef50_UPI00006CC456(2-85:1277) hypothetical protein TTHERM_00136430 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CC456 E=4e-05 s/c=0.58 id=14% cov=86% --------IPEKGEYNSILIHNIPENVTREEIQNSFKKFGTIKNIQSFKRKN--YTIRIEYTNSEDAQKAMKEMNFHTFQGEEINIQFFLDK---- >UniRef50_C5WX23(20-113:924) Putative uncharacterized protein Sb01g004800 n=1 Tax=Sorghum bicolor RepID=C5WX23_SORBI E=1e-09 s/c=0.68 id=18% cov=95% GETATVGAGGGHSPST-VFVSNLPYTFKSSDLEAVFSEVGPVRRCFMVAEKgseKSRGFGFVQFATVQDADRAIQQKNGFPVAGRKIRVKLAMN----- >UniRef50_C5E1Z1(612-712:835) KLTH0H00792p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5E1Z1_LACTC E=6e-05 s/c=0.48 id=18% cov=34% ----------KDQQESNLYVKHLPLSWRDEDFFQFYENFGEI------------------------------------------------------ >UniRef50_Q21911(40-127:320) Protein R10E9.1, confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=Q21911_CAEEL E=3e-06 s/c=0.60 id=19% cov=32% ----------------------------------------------------------ITFVDPSSVDKVLNN-REHELDGKKIdpKVAFP------- >UniRef50_B9PXP7(108-202:309) Serine/arginine rich splicing factor, putative n=3 Tax=Toxoplasma gondii RepID=B9PXP7_TOXGO E=4e-06 s/c=0.55 id=14% cov=45% ---GSGSGEQNKHRRYSVVARGVDRSATQDDLRKFFGRCSDVKDV--------------------------------------------------- >UniRef50_B6K871(10-88:198) Predicted protein n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K871_SCHJY E=6e-05 s/c=0.62 id=19% cov=32% ----------------------------------------------------------VEFEERRDAEAAHSRMHRTRLNDDILHVEW-------- >UniRef50_A0C1D1(26-120:124) Chromosome undetermined scaffold_141, whole genome shotgun sequence n=3 Tax=Oligohymenophorea RepID=A0C1D1_PARTE E=0.0003 s/c=0.49 id=15% cov=77% ---------PQKESTHSLYVDGIPNDAQEREVAHIFRPYPGFQRVRLIKKQTQKGReyllCFVDFDDALQATIVMQTLQGYRFDKN-------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 2919 * * * * 205 * * * * * * * * * * * * * * 1 0 * * * * * * 6180 0 0 S 2 5118 * 5154 * * * * * 3422 * * 2478 4952 3770 4955 1411 2677 * * * 2 0 * * * * * * 6952 0 0 S 3 3018 * 3646 * 5528 4111 * * 5618 * 4162 3687 4256 * * 1578 3326 3712 * * 3 0 * * * * * * 7190 0 0 G 4 2324 * * * * 1506 * * 3600 4377 * 4364 4410 5301 5446 3531 3978 5403 * * 4 0 * * * * * * 7521 0 0 S 5 3205 * 4053 4715 * 3577 * * 5460 5601 * 3270 3210 5493 4653 1709 3849 5854 * * 5 0 * * * * * * 7588 0 0 S 6 2822 * 4634 4616 * 3114 * * * 3759 * 5345 3371 4841 * 1532 4653 4428 * * 6 0 * * * * * * 7463 0 0 G 7 2206 * * 3985 * 3078 5815 5834 3898 5391 * 3748 3031 * 5735 3094 3246 4742 * * 7 79 4239 * 1595 580 * * 7609 2246 0 S 8 2914 * 3886 3657 * 4893 6269 * 5900 * * 4470 4910 4788 3593 1578 3766 4740 6189 * 8 0 * * * * * * 7691 0 0 V 9 2074 * * 3430 * 4005 * 3597 4017 5152 4218 5159 5816 * 5620 4059 3174 2976 5868 * 9 22 * 6077 * * * * 7722 0 0 P 10 3781 6208 5940 5414 * 5978 * * 3543 * * 6251 1309 4329 5935 2678 4094 4270 * 5456 10 26 5814 * 2000 415 0 * 7827 1000 1000 K 11 3789 5730 3756 4185 * 2472 * * 2949 * 5821 3933 4200 5290 4040 2459 4711 * * 5260 11 0 * * * * * * 7961 0 0 R 12 3580 * 3569 4295 5425 2939 5835 6461 2979 * * 5119 3867 4665 3169 3196 3685 5578 * 5967 12 0 * * * * * * 8016 0 0 Q 13 4485 6252 3730 3941 5845 4561 7108 5054 4302 6454 4575 4468 4559 3520 4946 2387 3512 3966 * 4308 13 55 4736 * 1258 781 * * 8041 2389 0 R 14 5322 * 3100 3010 6673 4511 6238 5930 3146 5432 5774 3883 3346 4303 2477 6375 5563 5175 * 4674 14 54 6428 5298 0 * * * 8041 1000 0 I 15 4070 * 4355 5299 5083 2581 5725 4797 5610 5575 5010 3671 3658 * 7166 2076 3315 5130 * 6469 15 44 5057 * 1035 966 0 * 8148 2198 1728 R 16 6554 5359 * * 6077 5083 5730 * 3365 5994 * 3125 * 6558 2344 3668 1799 5604 5334 4170 16 49 4908 * 2030 405 * * 8080 2270 0 K 17 5324 6224 * 6220 6285 * 5075 3732 2673 6367 * 3579 * * 2205 3394 2329 4221 6244 * 17 60 4613 * 818 1209 * * 8124 2865 0 L 18 * * * * * * * 2154 * 1153 * * * * * * 6068 1686 * * 18 0 * * * * * * 8079 0 0 Q 19 * 6939 * 6529 1651 * 4032 3413 5536 3986 6291 * * 6790 6567 6510 5785 4036 3937 2088 19 0 * * * * * * 8079 0 0 I 20 5805 6348 * * * * * 1544 * 3586 * * * * * * * 879 * * 20 15 6611 * 0 * * * 8123 1000 0 R 21 4860 6336 5713 4258 6380 1675 7159 6530 2631 * * 5003 * 4490 4052 2678 3737 * 6614 * 21 0 * * * * * * 8123 0 0 N 22 6621 * 4674 * * 2390 * * 6416 * 6457 647 * 6516 4900 5752 * 6079 * 5604 22 0 * * * * * * 8123 0 0 I 23 * * * * 5050 * * 2040 * 756 5294 * * * * * * 3196 * * 23 11 * 7105 * * * * 8123 0 0 P 24 5345 6440 2981 * * 4620 4196 * 5988 * * 5180 767 6589 * 4263 4698 6648 * * 24 14 6724 * 0 * * 0 8127 1000 1000 P 25 3931 * 4855 3309 2772 8745 5566 * 3505 4088 * 5572 2878 4612 4336 4335 4353 5779 5200 3461 25 0 * * * * 0 * 8127 0 1000 H 26 4295 * 2802 3438 5591 3210 4854 5788 3498 5139 * 3156 * 4313 6186 3138 3654 5947 6422 5813 26 0 * * * * * * 8123 0 0 L 27 3589 4466 * * 4173 * * 2711 * 3212 4158 * * 6457 * * 2390 2023 5170 5410 27 0 * * * * * * 8123 0 0 Q 28 5569 6702 3662 4658 * 4464 6514 * 4480 5410 * 3391 5609 5169 4813 2395 1583 6323 * 6547 28 0 * * * * * * 8123 0 0 W 29 3854 5793 2891 1396 5797 * 7176 5097 4541 6422 * 5804 4684 5090 4501 6880 3657 6242 4670 5744 29 0 * * * * * * 8123 0 0 E 30 3602 * 2492 1800 * 5538 4864 * 6172 6650 6557 4529 * 3910 4877 3577 4158 4422 * 4955 30 19 6267 * 1585 585 * * 8123 1000 0 V 31 4251 6616 1493 2194 6778 * 4777 7117 5022 5203 5473 5099 * 3332 5643 4935 4636 6821 * * 31 21 6088 * 1000 1000 * * 8136 1000 0 L 32 * * * * 4613 * * 1920 5986 978 5431 * * * * * 6580 2858 * * 32 0 * * * * * * 8136 0 0 D 33 4201 5014 5297 4538 5966 5694 4506 5329 2486 4250 4701 * * 4098 2052 3908 4832 5444 * 4370 33 0 * * * * * * 8033 0 0 S 34 3565 * 2936 3034 * 5454 6552 * 3264 5502 5747 3607 5433 2932 3486 3307 4386 6630 * * 34 14 6645 * 1585 585 * * 8033 1000 0 L 35 4244 * * 4930 3130 * 4034 2537 5157 1537 5593 6715 * 6635 6863 6645 4927 3908 * 4802 35 14 6715 * 2000 415 * * 8033 1000 0 L 36 6431 * * * 415 * * 4499 * 2945 4732 * * * * * * 5225 * * 36 0 * * * * * * 8033 0 0 V 37 3570 * 5442 3001 * 3381 6343 * 3164 5117 6656 3148 * 4105 3934 2137 * 5008 * 6106 37 13 * 6826 * * * * 8033 0 0 Q 38 5196 * 4120 3309 * 4234 5829 6753 2665 5991 6290 3465 3860 2887 3479 4079 3871 5624 * 5969 38 66 4487 * 2755 231 0 * 8027 2529 1000 Y 39 4293 3612 6411 6798 1744 6826 5444 4260 5594 4195 6489 * 6373 6324 * * 5770 3536 6440 2078 39 32 5523 * 1095 911 * * 8033 1814 0 G 40 3837 4872 4804 6298 6798 529 * 6552 * * * * 5309 4731 6373 5340 6450 6392 * 6439 40 28 * 5711 * * * * 8033 0 0 V 41 4029 * 3388 2867 * 4299 5218 6529 3264 4827 * 4452 2879 5113 4461 4566 3371 4306 * 4924 41 13 6807 * 0 * 928 1076 8024 1000 1688 V 42 6290 6435 * 5994 5097 5500 * 1614 * 3047 6857 * 5627 * 6239 * 5070 1560 * 4322 42 32 6630 6379 3170 170 * 0 8036 1000 1000 E 43 4918 7646 4940 2575 6466 5220 6426 4415 2827 3430 6739 4646 6075 3726 4750 4390 3538 3342 * 5517 43 73 4350 * 1850 469 0 * 8013 2691 1684 S 44 4477 6439 3057 2851 5594 5286 4420 6002 3312 5659 * 3780 5454 4648 3933 2540 4682 5372 * 5675 44 58 5086 6608 1926 440 * * 8033 2282 0 C 45 3121 3311 * * 4543 6731 * 2168 6650 3831 6090 6359 6575 * * 5714 4911 1718 4808 * 45 97 6428 4218 2000 415 * 0 8020 1000 1000 E 46 * 4517 3272 3661 6293 6390 5197 5705 2373 4092 5289 5187 5506 5446 2666 5195 3857 4221 6258 4945 46 71 4720 6610 1094 912 235 2734 8004 2748 3626 Q 47 6663 * 6318 6325 6655 * 4159 2320 3984 2054 4160 6549 * 5033 3532 6570 * 2811 * 4103 47 45 5839 6240 647 1468 0 * 8010 1712 1669 V 48 4983 6287 4395 * 5051 6287 * 2663 3747 2384 3660 * 5788 5490 4481 4567 5103 2530 * 4945 48 128 3915 5742 1551 602 * 0 7996 3601 1000 N 49 6354 * 3942 4836 4473 5775 3951 5479 2945 5848 5430 3677 3224 4352 3176 3532 3319 5341 * 6548 49 59 4631 * 1000 1000 * 0 7988 2743 2285 T 50 4732 * 2577 3553 4388 5429 * 6278 3955 4354 5141 3656 4061 5132 5036 2682 3086 * * 6367 50 15 6641 * 1585 585 1599 578 7988 1000 2285 D 51 5528 * 2489 3341 * 2462 6383 6279 2883 6880 5031 3592 4894 6204 3429 4406 5892 5775 * 6021 51 27 5773 * 1043 959 981 1019 8015 1765 1779 S 52 4522 * 5632 4223 6424 3652 4155 4985 2773 4816 5776 3228 4183 4894 2508 3298 5504 6822 * * 52 117 4121 5597 2804 223 0 * 8024 3314 1000 E 53 4533 6649 3717 3674 4255 5207 6778 * 4131 5720 5263 3070 3861 4686 4122 2397 3490 5735 * 5645 53 32 * 5501 * * * 0 7999 0 1752 T 54 5403 5464 5091 * 6301 3093 * 6193 2131 4726 * 4536 4196 4101 2713 3954 2942 * * 6415 54 84 4148 * 1483 639 * 0 7975 3048 2817 A 55 3297 * 6464 5487 6550 1254 6231 6262 4104 * 5250 3619 5596 4552 3854 5191 * 4939 6301 4747 55 54 4756 * 1510 624 438 1933 7975 2815 2817 V 56 5770 4955 6587 4853 2955 5517 4685 5035 5213 5121 5577 5465 4847 5056 3342 3149 3618 4220 5684 2697 56 96 4177 6732 1258 781 0 * 8018 3257 1000 V 57 1119 3744 * * 3499 2503 6375 5454 6645 4623 * * * * 5272 5066 6274 4773 * 6704 57 61 4991 6691 2018 409 * 0 8018 2342 1000 N 58 * 4068 7026 5899 1456 4627 5621 5803 4718 3619 6080 5739 * 5494 4532 5263 5123 3780 6545 3103 58 206 2909 * 1684 538 0 * 8013 5019 1779 V 59 4708 4084 * * 4474 * * 2215 6627 3642 5021 * * * * * * 940 * * 59 11 7013 * 0 * * * 8033 1000 0 T 60 4558 5106 4743 1888 * 5685 5738 6902 5044 4368 * 4366 * 4210 4346 3753 2529 3537 * 6575 60 0 * * * * * * 8033 0 0 Y 61 * * * * 765 * * * * * 3888 * * * * * * 5368 * 1645 61 30 5626 * 1351 718 * * 8018 1675 0 S 62 2923 5505 4494 2591 7830 * 5880 6631 3155 * 6041 5916 5009 4590 3511 2462 4436 4281 * 5583 62 29 6606 6657 2585 263 * * 8018 1000 0 S 63 4886 * 2212 6339 5441 7924 6415 * 5094 * * 2535 * 8133 3767 2492 2121 * * 6300 63 0 * * * * 0 * 8023 0 1000 K 64 3632 6607 5665 3387 4575 5428 3944 4503 4138 4295 5661 5511 2401 5449 3760 4310 5846 3616 5990 5723 64 0 * * * * * * 8018 0 0 D 65 3534 * 2432 1521 5942 4283 * * 4943 4987 * 4115 * 4102 6572 3946 4425 6608 * * 65 0 * * * * * * 8025 0 0 Q 66 3533 5109 2192 2228 * 5594 4662 * 5860 5338 * 4967 * 3682 * 3008 5396 3641 * 6369 66 0 * * * * * * 8025 0 0 A 67 528 5437 * * * 6215 6675 6766 6597 5417 6073 * * * * 4434 4061 3441 * 7923 67 0 * * * * * * 8025 0 0 R 68 3251 * 3281 3453 5680 6532 5436 5498 2944 3359 5369 5447 * 2941 3826 4673 3751 4774 * * 68 0 * * * * * * 8025 0 0 Q 69 2709 6763 5064 3073 * 6416 5506 5196 2697 3470 4873 4093 * 3737 3817 4595 4071 5501 * 5497 69 0 * * * * * * 8025 0 0 A 70 445 3771 * * 5572 6311 * 4911 * 6325 6658 * * * * 5567 6522 3819 * * 70 13 6825 * 1000 1000 * * 8025 1000 0 L 71 4574 5149 * * 5545 * 6096 1851 4774 2531 3175 * * 6376 5663 * 5365 2129 6425 * 71 34 * 5425 * * * * 8025 0 0 D 72 3520 * 3605 2596 6663 6557 5690 5500 3723 5275 5283 3994 * 3585 3392 2768 3915 5533 * * 72 14 * 6700 * * 0 * 7990 0 1536 K 73 2923 5494 4371 2944 6406 5016 4911 5193 2687 4101 5308 4465 * 4886 3518 3981 3862 5459 * 7824 73 24 * 5928 * * * 0 8019 0 1000 L 74 5305 * * * 3205 5748 6706 5977 5420 967 2412 * * * 6272 * 6548 * * 3723 74 19 6657 8208 1000 1000 0 * 8010 1000 2243 N 75 5781 * 2970 6476 * * 2616 * 6393 * * 986 * 3888 5562 3929 6874 * * * 75 13 6831 * 2322 322 0 * 8014 1000 1000 G 76 5775 * 4045 5272 * 921 4843 * 4842 6087 * 2449 6169 4723 6875 5112 * * * 6592 76 15 6585 * 0 * * * 8015 1000 0 F 77 4786 * * 6578 3030 5233 3954 4533 3419 4514 4833 5564 * 3653 3895 4101 3013 3990 6560 3311 77 15 6642 * 0 * * * 8015 1000 0 Q 78 * * 4022 2586 5448 7948 4906 4136 3017 5480 6247 5450 3616 3302 4128 4380 3085 4321 * 5914 78 0 * * * * * * 7988 0 0 L 79 5523 6426 * * 2251 * * 2348 * 1691 * * 6282 6766 * * 5578 2966 5590 4087 79 45 5010 * 334 2273 * * 7988 2221 0 E 80 4212 6244 2326 3296 5587 2782 5757 * 3206 3955 3839 4073 5428 5105 4198 5446 * * 6761 7434 80 32 5514 * 1585 585 * * 7937 1704 0 N 81 6073 * 4398 3905 * 604 5697 * 6524 * * 3339 * 5623 * 4453 5796 * * * 81 17 6436 * 1000 1000 * * 7935 1000 0 F 82 6283 5995 * * 6548 4859 4102 * 2799 7678 * 3750 * 2971 1471 3122 6000 5611 * 7364 82 0 * * * * * * 7776 0 0 T 83 5762 4951 5179 3616 * * 5726 3631 3256 4599 7219 6416 3840 4091 3143 4159 2509 3483 6239 * 83 0 * * * * * * 7732 0 0 L 84 * * * * 6239 * * 2185 * 860 3593 * * * * * * 3094 5970 * 84 0 * * * * * * 7732 0 0 K 85 5347 * 4889 4379 6360 * 4523 * 1976 6590 * 4288 * 3121 2198 4175 3818 4659 * 5411 85 0 * * * * * * 7814 0 0 V 86 4149 4355 * 5607 * * * 2476 * 3910 5846 * * * * * * 712 * * 86 56 4720 * 2344 316 * * 7807 2283 0 A 87 3750 * 3225 3178 * 4839 5059 * 3970 * 6069 4748 * 4488 3125 2302 2719 6197 * * 87 0 * * * * * * 7511 0 0 Y 88 5632 * * 4439 2853 * 4722 4974 6008 2723 5133 * * * 4064 5953 * 5057 2852 1808 88 34 5442 * 3000 193 * * 7432 1000 0 I 89 1654 * 3352 * 5326 * * 3589 * 5147 * * 2712 * * 4881 4161 2282 * * 89 77 4259 * 1701 530 * * 6765 1684 0 P 90 * * 3969 * 4953 * 4813 * 2899 * 4157 5116 1564 5187 2684 * 3397 4922 * * 90 42 5126 * 1000 1000 * * 6472 1000 0 D 91 * * 1010 2880 * 4898 * * 3579 * * 3538 4993 * * 4813 3361 * * * 91 0 * * * * * * 6472 0 0 E 92 5080 * 4774 1173 * * 4967 * 2102 * * * * 3041 * 4854 * * * 3851 92 0 * * * * * * 6244 0 0 M 93 * * * 2948 * * * 3257 2707 2795 2671 4365 * 3299 * 3245 4160 * * * 93 0 * * * * * * 5591 0 0 A 94 2307 * * 2186 * 4077 4123 * * * * * 3913 * * 1933 3934 3881 * * 94 0 * * * * * * 5256 0 0 A 95 852 * * * * 3884 * 3787 * * * * * * 3682 2675 * 3813 * * 95 0 * * * * * * 4922 0 0 Q 96 * * * * * * 3149 * 2893 * * * * 674 2990 * * * * * 96 0 * * 0 * * * 3988 0 0 //