HHsearch 1.5 NAME c2dnuA_ FAM FILE c2dnuA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2dnuA_.a3m DATE Thu Mar 11 11:27:53 2010 LENG 71 match states, 71 columns in multiple alignment FILT 106 out of 2840 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4674 1.8450 SEQ >ss_dssp CCCCCCCSEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCCCCSCCC >sa_dssp EEEDEEDECDBCADEECECEDEECBCBDEECEABBDEDDEEDCCCADCEEEDACABCEDBDECEEEEEEEE >ss_pred CCCCCCCCEEEEEEECCCCCCCCEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEHHEEEECCCCCCCCC >ss_conf 98777786189995041688886622827998999996079869999589276875421999566788898 >Consensus gsxxxxxxxxxxalxxyxaxxxxeLsxxxGdxixvlxxxxxxWxxxxxxgxxGxvPxxyvxxxxxxxpssg >c2dnuA_ GSSGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSGPSSG >UniRef50_UPI000180C790(1111-1178:1393) PREDICTED: hypothetical protein n=1 Tax=Ciona intestinalis RepID=UPI000180C790 E=2e-07 s/c=0.84 id=22% cov=94% -ATGVKPQHTVVALYDYQANRSDEITIVRGDIIRVLYKDGPTWWFGELvsDGRQGYFPSNYVAINDNES---- >UniRef50_Q5VZB4(337-402:450) SLIT-ROBO Rho GTPase activating protein 2 (Fragment) n=26 Tax=Euteleostomi RepID=Q5VZB4_HUMAN E=8e-06 s/c=0.78 id=22% cov=89% ----TSDDECepieAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTE----- >UniRef50_C3Y473(1440-1502:1604) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y473_BRAFL E=0.0002 s/c=0.74 id=20% cov=85% ----------YKASKQHTPTQPMDLCIAEGDLIGVIKQQDPmggqDRWFVDNGEQKGLVPSSCLTPVTETPPS-- >UniRef50_A3LNM9(9-70:618) Predicted protein n=1 Tax=Pichia stipitis RepID=A3LNM9_PICST E=2e-07 s/c=0.92 id=23% cov=86% ---------KVKTKVSWAGEEDGDLGFLENEIIEVYSIVDESWWSGKLrrNRAEGIFPKDYVEVIPELNKS-- >UniRef50_UPI00015559F8(419-476:556) PREDICTED: similar to papillary renal cell carcinoma translocation-associated gene product, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI00015559F8 E=3e-06 s/c=0.91 id=19% cov=82% ---------RMRVLYEFQSRNPRELTVSQDEMLEILDQS-KQWWLVKNrQGQTGYIPNNILEAAQPRG---- >UniRef50_A5DAK8(2-73:929) Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DAK8_PICGU E=4e-05 s/c=0.69 id=22% cov=85% ----------YLCIKQFNARLGDELNLKIGDKVEVLaddSEYNDGWYMGKnmLTNEVGLYPKSFTQLLQTPSGS-- >UniRef50_Q6MWN2(12-78:2077) Related to dock180 protein n=4 Tax=Sordariales RepID=Q6MWN2_NEUCR E=3e-05 s/c=0.74 id=24% cov=46% -----------VATYPFTASSAADLPLEIGDELYIIeETPDGNW---------------------------- >UniRef50_C9S6B5(525-594:696) BZZ1 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S6B5_VERA1 E=1e-08 s/c=0.88 id=23% cov=99% GSSSSADHQSGKMLYGFEASGDGELSVAEGrEVILLEPDDGSGWLKVRAGYKEGLVPATYVEIMAAPTPA-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1446 * * * * 660 * * * * * * * * * * * * * * 1 0 * * * * * * 5027 0 0 S 2 2061 * * * * * * * 3979 * * 5318 4862 * * 791 4071 * * * 2 0 * * * * * * 5886 0 0 S 3 4104 * 4365 5090 * 4717 4146 5262 * * * 3279 * 5384 4186 1728 2072 5521 * * 3 0 * * * * * * 6160 0 0 G 4 3955 5459 5430 3248 * 1400 5584 * 2558 5941 * 5431 4364 5899 * 5101 3986 * * 5818 4 0 * * * * * * 6362 0 0 S 5 3273 4996 5832 2207 4732 5854 * 5030 * 5935 * 3681 4502 4857 6352 2078 3016 * * * 5 0 * * * * * * 6482 0 0 S 6 2492 * 4353 5627 * 2975 5908 * * 4278 * 4934 3549 4118 * 2436 2805 4211 * * 6 0 * * * * * * 6547 0 0 G 7 4940 * 2163 3124 5934 2774 * 6082 4295 * * 4337 2967 3400 4371 5083 4699 6297 * * 7 0 * * * * * * 6789 0 0 E 8 3969 * 3733 2730 * 3814 3773 3954 3858 4768 * * 4434 3287 3018 3869 6501 * 6169 5052 8 0 * * * * * * 6800 0 0 E 9 5984 6180 4629 2066 6145 * 4630 * 2888 * 4840 6322 4365 2846 3455 3661 6328 4735 * 4432 9 15 6550 * 1585 585 * * 6802 1000 0 K 10 6239 4871 * 4534 5823 * 5334 4616 2282 4656 4583 * 4795 3977 2441 4379 3861 3517 * 4288 10 35 5389 * 1507 626 * * 6782 1671 0 Y 11 2305 6395 * * 3052 4171 4230 6094 * 4603 5749 * * * * * * 1696 * 2527 11 42 5137 * 1507 625 * * 6790 2196 0 V 12 * 6402 * 5661 5103 * * 2512 3126 4446 * * * 4554 2302 6470 4118 2019 * 4551 12 31 5534 * 674 1422 * * 6781 1568 0 T 13 865 4582 * * * 6602 * 5879 * 5988 5923 * * * * 5652 4075 1887 * * 13 17 6426 * 1000 1000 * * 6808 1000 0 V 14 5776 6092 * 5333 * * * 2677 2773 1424 5274 6663 * 7434 5723 4278 4523 3167 * * 14 0 * * * * * * 6818 0 0 Q 15 3704 5428 * 5090 2338 * 3526 6405 4642 6964 * 5557 * 4547 4745 4758 6519 6590 6174 1503 15 13 6791 * 2000 415 * * 6852 1000 0 P 16 3046 * 1488 4254 * 4294 * * 6153 * * 3584 4383 6197 5695 2392 4965 * * 5772 16 0 * * * * * * 6852 0 0 Y 17 * * * * 1273 * 3840 * * * * * * * * * * * 5368 1022 17 16 6522 * 3170 170 * * 6870 1000 0 T 18 5052 * 3487 2963 * * 5608 4058 3789 5772 6423 4096 6614 3037 5187 3407 2507 3618 * * 18 16 6465 * 2000 415 * * 6870 1000 0 S 19 1241 * * 6885 * 2696 * * 4344 * 6154 * 2679 6432 6856 3074 4520 6365 * * 19 27 5748 * 1590 583 * * 6870 1687 0 Q 20 5595 * 3703 2976 * 4804 6678 * 3708 * 6238 4852 5355 2492 2759 2844 3526 5744 * 6525 20 27 5779 * 610 1535 * * 6877 1596 0 S 21 5193 * 2294 3245 * 2823 4032 5734 5256 5772 5560 3244 6701 4564 4052 4078 4102 5785 * 5444 21 25 5845 * 1925 441 * * 6877 1641 0 K 22 3749 * 2817 2647 6450 3603 5342 5958 4105 6490 6792 4620 2302 4407 * 3749 5180 5729 * * 22 0 * * * * * * 6877 0 0 D 23 5780 * 1646 3730 * 2767 4706 * 4172 * 6213 3367 6732 4035 5150 3365 5419 5887 * * 23 65 4506 * 1573 591 * * 6882 2835 0 E 24 5723 6923 2854 729 6432 5921 4551 * 6371 6391 4629 * * 3897 * 6735 6554 6838 * * 24 20 6189 * 1000 1000 * * 6882 1000 0 I 25 * 6076 * * * * * 2939 * 527 3703 * * * * * * 3571 * * 25 0 * * * * * * 6882 0 0 G 26 4575 4719 4175 4160 * 5259 * * 4334 * 6020 4404 3341 * 6626 1181 3052 * * * 26 0 * * * * * * 6882 0 0 F 27 5027 * * * 1548 * * 2646 * 1773 5365 * * * * 6020 * 2885 * * 27 0 * * * * * * 6882 0 0 E 28 3581 4956 4959 3176 5678 7072 6262 6104 2448 5183 6205 4032 5849 3345 3041 4209 4464 3946 * * 28 0 * * * * * * 6882 0 0 K 29 3769 * 5753 1951 * * 5404 5731 1865 * * 6205 4043 4174 3663 5670 6436 3429 * * 29 0 * * * * * * 6882 0 0 G 30 6457 * 3310 * * 386 * * * * * 3367 * * * 6688 * * * 5955 30 26 5818 * 0 * * * 6882 1598 0 V 31 4801 * 1056 1637 * * * * * * * 6714 * 3600 6855 6120 5780 5133 * * 31 0 * * * * * * 6882 0 0 T 32 4291 * * 3279 6429 * 5883 2349 4173 3774 5807 * 4853 5118 3534 5131 3600 2536 7023 4891 32 0 * * * * * * 6882 0 0 V 33 * 6076 * * 4325 * * 1760 * 2009 5266 * * * * * * 1651 6104 4937 33 22 6041 * 603 1549 * * 6882 1663 0 E 34 5421 * 3737 3124 4616 6213 4604 2830 3897 4129 5411 * * 4191 3834 5717 2732 3986 * 4451 34 57 5086 6732 0 * * * 6882 2105 0 V 35 4107 5606 * 6694 * * 6641 2304 * 2261 * 6526 * 6854 * * * 1120 * 6501 35 0 * * * * 0 * 6877 0 1000 I 36 6204 5666 5860 5280 4812 5433 5230 2509 4972 1431 5561 * 6529 6428 * 5740 4536 3237 * 4368 36 26 5800 * 1063 939 * * 6881 1748 0 R 37 4159 5263 2983 2797 * 4267 7113 * 3479 6463 * 3078 5606 3382 3410 3505 5543 5936 * 4938 37 115 3709 * 971 1030 * * 6881 3413 0 K 38 4529 6314 2930 3718 5954 * 4787 4308 2193 * 4297 6655 5843 3305 4121 4146 3796 4596 * 6831 38 0 * * * * * * 6881 0 0 N 39 4752 5123 3096 4231 * 3745 4013 5640 6197 5135 * 3789 4903 4250 6720 2362 3360 3726 6184 5936 39 129 4020 5384 722 1345 * * 6881 3700 0 L 40 5236 4814 1993 2776 * 4187 5679 * 3656 6742 6518 2729 4601 5031 5908 3609 5029 * 6999 7132 40 113 3725 * 1670 544 0 * 6870 3531 2296 E 41 4282 6841 1669 3197 * 3728 6888 * 4195 * * 3472 3447 5018 4631 3001 * * * * 41 48 5490 6590 1448 659 * * 6881 1701 0 G 42 * * 2755 3271 * 1562 4998 * 6532 5321 * 3411 4767 4769 5508 5275 * * 3333 5155 42 28 5681 * 1001 999 0 * 6797 1741 1000 W 43 * * * * 5915 * * * * 6628 * 6347 * * 5212 * * * 189 4137 43 27 5744 * 772 1270 * * 6799 1602 0 W 44 4603 4129 * 6444 4164 6831 6873 4982 4588 3326 4258 * * 5746 * 5713 5418 4313 1198 4492 44 11 7004 * 0 * * * 6799 1000 0 Y 45 4585 6037 * 3125 3651 5872 6360 5103 3444 3090 4944 4996 * 4297 3358 5696 5884 3739 4534 3124 45 36 5349 * 689 1398 * * 6799 1635 0 I 46 2756 4261 * 6037 * 1350 * 5825 6347 * 6976 * * 4687 4802 6444 5748 2002 * * 46 46 5006 * 1018 982 * * 6799 2248 0 R 47 5673 5511 5697 2407 * 6955 6662 4591 2954 6540 6050 3238 7032 4062 2134 4601 4424 5441 6248 6502 47 145 3382 * 568 1619 * * 6712 4012 0 Y 48 4204 5263 5148 * 4964 * 3994 4073 2838 3057 6428 2587 6846 6334 4744 3174 5936 3798 * 4580 48 275 2525 * 951 1051 * * 6712 4952 0 L 49 5756 6832 2394 * 6465 3651 4236 6846 3606 4224 6706 2646 6397 3928 3747 3441 3633 * * * 49 91 4031 * 1941 435 * * 6712 3452 0 G 50 6700 * 3430 4451 5566 1086 * * 4316 5572 6718 3273 * 4879 5066 4353 5220 6846 * 5205 50 149 3352 * 564 1627 * * 6712 4014 0 K 51 6656 * 5743 3567 * 4858 * 6878 2230 5513 * 4969 * 2343 1922 4954 4099 6136 * 6470 51 54 4778 * 986 1014 * * 6712 2677 0 E 52 5309 4602 4878 2463 5610 * * 3105 4022 5045 5710 * 4451 3491 3127 3155 5346 4234 6171 5828 52 56 4717 * 1762 504 * * 6710 2690 0 G 53 6262 * * * 4730 75 * * * * * * * * * * * * * * 53 0 * * * * * * 6710 0 0 W 54 6378 * * * 2645 * * 3647 * 1732 5060 * * 5877 5778 * 6171 4138 2842 2541 54 0 * * * * * * 6684 0 0 A 55 4184 5692 * * 1731 * * 2552 * 4030 6642 * * * * * * 1436 * 6283 55 0 * * * * * * 6684 0 0 P 56 5802 * * * * 5850 * * * * * * 52 * * * * * * * 56 22 * 6061 * * * * 6713 0 0 A 57 2090 6462 * 4459 4814 5461 5772 5261 3061 5148 6532 * * 6649 3245 2239 6305 4074 * 4395 57 0 * * * * * 0 6704 0 1000 S 58 3632 6206 5144 4540 6452 6254 6673 6658 5205 * 6522 1795 6465 4914 5404 1893 3298 5315 * * 58 0 * * * * * 0 6708 0 1000 Y 59 * 3656 * * 1894 6437 4810 5102 * 4306 * * * * 6462 * * * * 962 59 17 6435 * 0 * 0 * 6688 1000 1000 L 60 6285 * * * 5006 * * 3078 * 1846 4728 * * * * * 5341 1009 * * 60 26 5802 * 654 1455 * * 6697 1509 0 K 61 4362 * 6132 1524 * 4707 6490 * 2467 6183 6175 6532 * 2860 3530 4863 4285 6537 * * 61 0 * * * * * * 6710 0 0 K 62 6149 * 5828 3215 6333 * * 2751 2583 2796 6290 5080 3299 6513 3767 5546 6022 3015 * * 62 0 * * * * * * 6680 0 0 A 63 3985 6217 * 4648 5863 * * 2596 * 2499 3351 6037 5124 4629 * 5374 4680 2239 * 3905 63 23 5994 * 2585 263 * * 6684 1000 0 K 64 4363 * 2703 3785 * 3223 * 5530 2599 * * 5324 3411 * 2857 3891 3433 * * 6108 64 18 6308 * 0 * * * 6658 1000 0 D 65 4856 * 2182 2218 5569 5718 * * 4406 5023 * * 4313 4010 4276 3370 2829 6543 * * 65 16 6512 * 1585 585 * * 6627 1000 0 S 66 3726 * 3860 3195 * * 6081 4103 4049 4894 * 4719 3455 3495 4171 2443 3353 5364 * * 66 28 * 5687 * * * * 6509 0 0 G 67 3794 * 4899 5537 * 4350 * 5095 4051 3457 * 3214 5059 3773 4131 1744 3704 * * * 67 36 5347 * 1585 585 0 * 6385 1000 1000 P 68 5091 * * * * 5348 * * 4838 3960 5246 * 769 4998 3749 3320 5158 * * * 68 0 * * * * * * 6207 0 0 S 69 2795 4294 * 4792 * * * * 4638 * * 4492 * 4296 * 1034 2786 * * * 69 0 * * * * * * 5872 0 0 S 70 * * * * 4179 3809 * * 3648 * * * * * * 333 * * * * 70 0 * * * * * * 4566 0 0 G 71 * * * * * 0 * * * * * * * * * * * * * * 71 0 * * 0 * * * 3664 0 0 //