HHsearch 1.5 NAME c2dmdA_ FAM FILE c2dmdA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2dmdA_.a3m DATE Thu Mar 11 23:17:19 2010 LENG 96 match states, 96 columns in multiple alignment FILT 124 out of 18113 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 10.1 EVD 0.5284 1.5212 SEQ >ss_dssp CCCCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCCCCCCC >sa_dssp EEEEEEEEEEAEEDEEECEEEDECEECCEEDEDEDEDDBEECEDDAEDDDCCEECDEECEEEDEDEBEECEDBBEDDDECEECDEECEEEEEEEEE >ss_pred CCCCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCC >ss_conf 987889959977688864040104232222222211222222211221100000012222322234540001244857874225543889988898 >Consensus gsHxxekpyxCxxCxkxFxxxxxLxxHxxxhxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCxxCxkxFxxxxxLxxHxxxHtgEkpxxcg >c2dmdA_ GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG >UniRef50_Q17793(209-271:355) Protein T09F3.1, confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q17793_CAEEL E=4e-06 s/c=0.83 id=19% cov=59% ------------------------------------YQCQLCKKSISRHGqyanllnHLSRHARLHASKKQYCCPKCGASFTRRYLASTHIKEVHGEPK- --- >UniRef50_B0WHQ9(383-480:552) Zinc finger protein 79 n=2 Tax=Culex quinquefasciatus RepID=B0WHQ9_CULQU E=3e-06 s/c=0.54 id=17% cov=100% -THLGEKVFQCPECPAAYVSRESLRKHIQRHTMPEDKYKCPECGRCYRSSKNLKEHLNLHTGERPFVCTFGDcsaAFARDTSLAKHILTHTGRKDYQCG >UniRef50_UPI000186CCC2(432-517:664) zinc finger protein, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CCC2 E=8e-05 s/c=0.56 id=18% cov=91% ---------KCKICHAQFKTLESLKNHMAVDSHNYECVHCRNVFSSERFLRRHLATHLDPSESKYKCMKCKKTFRTQKYLNNHAFVHSEEKPFNC- >UniRef50_Q6H236(605-691:2387) Paternally-expressed gene 3 protein n=10 Tax=Eutheria RepID=PEG3_BOVIN E=3e-05 s/c=0.57 id=19% cov=90% ---GKEKRYECKVCGETFHHSAALRehQKTHGRGSPSEGRARAFEETFIPGQSLKRRQKTYSKEKLYDFREGGDAFGRSSDFMEHQKIHS-------- >UniRef50_UPI00016E931A(707-813:2299) UPI00016E931A related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E931A E=6e-05 s/c=0.45 id=18% cov=96% ----GTKPYICIQldCKASFNSNSELLMHRKtHPEFKAQCMFPNCGQVFNEAYLLYDHEAQHYLTYTCQTDNCGKVFHSQSQYLSHQEIHnisyavnslp lTNENPPAT- >UniRef50_B8MWV5(338-440:656) Homeobox protein meis, putative n=2 Tax=Aspergillus RepID=B8MWV5_ASPFN E=0.0002 s/c=0.45 id=19% cov=95% ----GQRPYQCTFCSDTFNTKYDWQRHEKALHLPVDRWICapqgglvevdgaHVCTFCQAPDVDFNHLETHGYLACREKSLDQRTFTRKDHLRQHLRlTH NVDYHPS-- >UniRef50_C7YNT3(127-225:502) Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YNT3_NECH7 E=0.001 s/c=0.45 id=18% cov=96% -----ERKHVCPKegCGKSFVTGTRLKRHqavHEGEERFRCQDCGQSFRKKETLNKHVRKDHQGLPALQCPEEGCPRAFDSKATLKRHREREHGEAKFWC G # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 4583 0 0 S 2 3366 * * 5196 * * * 5180 * 4163 * * * * 5288 1377 1471 5580 * * 2 0 * * * * * * 8043 0 0 S 3 4985 * 6092 * * * 326 * 5922 * * * 4514 * * 4355 4413 * * * 3 0 * * * * * * 9046 0 0 G 4 4177 * 6072 4860 * 2534 * * 3966 * * 4161 5141 * 6363 2221 1588 6035 * * 4 0 * * * * * * 9129 0 0 S 5 6264 * 5367 3393 * 1219 6349 * 2946 * * 4029 5379 5250 5274 3190 4783 6301 * * 5 0 * * * * * * 9492 0 0 S 6 5454 * 2885 1278 6413 4846 * * 3799 3969 * 6516 5285 4126 5436 4349 4471 5509 6150 * 6 0 * * * * * * 9597 0 0 G 7 5319 * 6472 4069 5337 2768 6477 * 1398 * * 4663 * * 1726 * * * * * 7 17 * 6394 * * * * 9624 0 0 P 8 5514 * 5408 * * 6189 * 5434 4016 6297 5514 4224 772 5621 3389 4230 * 6256 * * 8 18 * 6352 * * 0 * 9683 0 1000 H 9 * 6190 * * 1600 * 2706 6704 * 4512 * * * * * * 6389 5791 * 1253 9 0 * * * * 0 * 10244 0 1000 K 10 4600 6670 6694 3323 5707 6985 5692 3839 2275 4540 6380 6709 4608 2745 3584 4110 3981 4127 * * 10 0 * * * * * * 10309 0 0 C 11 * 51 * * * * * * * * * * * * * * * * * 4854 11 0 * * * * * * 10487 0 0 E 12 5375 * 2876 3050 6814 4180 4786 * 3192 * 6703 3516 2865 4419 4760 3198 4181 * 7064 5665 12 0 * * * * * * 10487 0 0 V 13 4480 * 4019 2767 3951 7103 3864 2939 4276 3483 7115 6056 * 3356 6810 5061 5907 3063 6982 4988 13 111 3759 * 1000 1000 * * 10487 4543 0 C 14 * 62 * * 6561 * * * * * * 5668 * 6376 * * * * * * 14 13 6767 * 0 * * * 10487 1000 0 G 15 5328 * 2787 5265 * 1497 5762 * 6434 5016 7051 3310 3493 4716 5982 3347 6909 * 6735 5511 15 0 * * * * * * 10487 0 0 K 16 4455 * 5368 4856 4665 7128 4383 5680 1181 4838 6857 5231 * 4541 3181 5512 6739 6762 * 3704 16 25 5845 * 1000 1000 * * 10487 1780 0 C 17 2922 6127 5173 4856 5505 3717 5022 6999 3937 5789 5974 7057 4862 4665 3334 2435 2947 4415 6197 * 17 0 * * * * * * 10487 0 0 F 18 5819 * * * 540 6636 6900 * * 3984 * * * * * 4555 3925 6168 * 3462 18 12 6960 * 1585 585 * * 10487 1000 0 S 19 3596 6872 5291 * 6972 4572 4348 5482 2883 4180 5515 4303 4627 6653 3261 2955 3057 4176 * 4671 19 26 5814 * 1554 601 * * 10493 1666 0 R 20 5899 5034 4179 5970 5905 5166 3831 * 4840 4491 * 3396 7093 3373 2861 3238 2415 5773 6921 5016 20 24 5894 * 2192 356 * * 10493 1717 0 K 21 6129 * 5743 4362 4945 5444 6827 6866 1860 4422 5404 3864 5063 3510 2769 3079 6115 5345 * 6739 21 0 * * * * * * 10493 0 0 D 22 3319 5956 4750 3732 4900 5825 5285 6450 3750 7086 6011 4360 5091 4211 3713 1968 4523 5027 5843 5039 22 0 * * * * * * 10493 0 0 K 23 3821 7333 3439 4519 6609 3967 2839 5679 4438 5445 6738 2618 5867 3821 4334 3104 4953 7102 * 5710 23 21 * 6088 * * * * 10493 0 0 L 24 * 4551 * * 3752 * 6943 5166 * 632 4150 * 6823 * 5838 * * 4952 5347 3999 24 51 5366 6606 2607 259 949 1052 10481 2286 1737 K 25 5102 * 4608 4556 5595 * 5347 3924 3124 4276 * 3263 * 3576 2747 3392 3495 3622 * 6989 25 21 6142 * 1000 1000 946 1056 10484 1226 1752 T 26 4332 6030 6034 3934 * 6016 4769 4051 3648 3956 6968 4354 6492 3540 1949 4180 3341 5419 * 7051 26 0 * * * * * 0 10497 0 1000 H 27 * * * * * * 240 * 4328 6620 * 5798 6463 6434 5918 5331 6492 * * * 27 79 4225 * 1688 536 0 * 10497 4187 1000 M 28 5990 * 6444 3944 5761 * 4338 3551 4194 2704 3024 * * 2552 4204 5815 4400 3472 5893 5227 28 45 5023 * 1686 537 * * 10493 2897 0 R 29 4429 5249 5071 4063 6112 6767 4629 5467 2044 3478 5226 4105 * 3832 2412 5325 5389 5965 * 6521 29 23 5963 * 3534 130 * * 10493 1681 0 C 30 4127 5621 5628 6023 5484 4517 5406 4263 3493 4154 4596 4246 6912 4440 3366 3467 2800 3502 5917 5977 30 32 7369 5995 0 * * * 10493 1000 0 H 31 4250 4387 6893 5348 6109 5774 1019 5917 4231 5069 5403 5883 4868 5219 4699 4324 5747 4966 * * 31 43 5083 * 2193 356 0 * 10470 2887 1678 T 32 4554 4351 7174 4022 5984 4705 2027 4397 3570 5114 5885 5093 4704 7172 4283 3902 3028 5231 * 5582 32 111 4087 6046 2964 198 * * 10493 4217 0 G 33 4077 6023 3833 4029 6854 2700 4190 7033 3325 3519 5387 3394 5038 4155 4281 4247 4942 5902 * 5446 33 49 4898 * 2729 236 981 1019 10469 2820 1662 V 34 5870 4858 4513 2862 5400 4167 5953 3903 2982 4778 * 3289 3891 4255 4517 4130 5043 4188 5885 5910 34 15 6634 * 3700 115 0 * 10481 1000 1000 K 35 5186 4046 4799 3684 4693 4462 4625 6727 2371 4558 4583 5495 4190 3455 3120 4695 5467 4863 6961 * 35 43 5092 * 1295 755 * * 10493 2716 0 P 36 3600 4152 4207 3553 4982 5009 4946 5311 3019 4696 6675 5954 3098 5496 3779 3765 4158 3970 * 6872 36 11 * 7039 * * * * 10493 0 0 Y 37 4138 3602 5098 4481 2975 5355 4803 6669 4996 3678 5791 4404 3609 4527 4130 5307 4115 4309 7154 3441 37 35 6076 6821 0 * 0 * 10479 1695 1000 K 38 5465 3154 4870 4274 4302 4853 4595 5277 3351 5435 5205 5264 3558 4034 3667 4153 3659 4028 6766 5516 38 0 * * * * * 0 10483 0 1000 C 39 3968 1528 3963 3958 4448 6038 6131 5771 4155 5784 * 6110 4202 5560 5274 4089 4565 4187 * 5558 39 32 6058 7146 1000 1000 0 * 10483 1642 1000 K 40 4257 3188 3908 3666 * 5108 4659 4695 3268 4194 6969 4083 4357 4111 3704 3592 4386 5108 * 5895 40 26 5826 * 3483 135 0 * 10494 1732 1000 T 41 6022 3157 4367 3361 4343 3353 4168 5213 3403 3834 5616 * 4390 4450 5419 4341 4175 3857 * 5545 41 39 5912 6638 2329 320 * * 10493 1710 0 C 42 4922 1418 6118 4635 4210 4488 7076 6649 4594 4070 * 4143 4513 4542 5076 5125 4856 4878 5219 5365 42 15 6597 * 3170 170 * 0 10466 1000 1000 D 43 4986 3372 4068 3145 4636 3270 6826 4827 4048 4352 5309 4088 3624 7169 4006 4057 4605 4089 * 7066 43 0 * * * * 0 * 10466 0 1000 Y 44 5321 3748 7080 3631 4576 3967 6029 6521 2466 4965 4619 3888 4788 4351 3449 4619 4163 4630 * 4462 44 0 * * * * * * 10493 0 0 A 45 4400 4479 4937 5531 4106 4759 5261 3973 2862 4918 4983 4294 3653 4654 4072 3574 4072 4164 6965 5079 45 0 * * * * * * 10493 0 0 A 46 4572 4177 * 4146 2135 4395 4947 4606 4489 4457 7026 6767 4914 4524 4584 3331 3616 4329 * 4588 46 11 7048 * 2000 415 * * 10493 1000 0 A 47 3868 4820 4048 3674 3391 7116 4272 4341 3863 3632 5454 4473 4305 5869 5127 3199 4983 4657 5310 4846 47 13 6754 * 1585 585 * * 10493 1000 0 D 48 4460 5690 4613 3307 5003 3953 4436 4790 3580 4799 6965 3692 4425 4224 3614 3349 4296 5431 6089 4589 48 12 * 6866 * * * * 10493 0 0 S 49 4666 6105 3660 4218 4148 5029 4602 4865 3002 3770 5957 4313 4019 6022 3398 3583 4274 4839 7101 4762 49 0 * * * * 0 * 10481 0 1000 S 50 3724 5925 5092 5413 4996 5408 3919 6126 3532 4168 * 3812 4858 3880 4011 2580 4212 4057 5667 4605 50 39 5740 6936 663 1440 * * 10493 1763 0 S 51 3917 7119 3674 4287 7156 4669 4802 5279 4259 3799 5345 3482 4725 3907 4032 3002 3848 3890 * 5405 51 12 * 6962 * * * 0 10482 0 1000 L 52 5331 5261 6765 4666 3811 6874 4254 4571 3615 2508 3984 4789 4991 5462 3546 3675 4978 3900 7123 4455 52 24 5898 * 2208 352 928 1076 10476 1712 1673 N 53 3944 5447 4425 4146 5863 5885 3020 5200 3011 3432 5015 4921 6659 3899 4082 3894 3665 5213 6492 5403 53 22 6018 * 3458 138 * 0 10482 1682 1000 K 54 4900 6734 5297 3575 5351 4355 3167 4573 3878 4207 5486 3942 6903 3346 2514 5341 4029 5230 6769 6949 54 10 7217 * 2322 322 * 0 10482 1000 1000 H 55 5724 6962 4150 3910 6009 6965 1335 5859 3484 3905 5976 5000 5663 4735 3959 4654 5990 6001 * 5868 55 0 * * * * 0 * 10482 0 1000 L 56 6062 5677 5414 3588 5311 6727 3499 3569 4131 3326 3967 5391 4873 3482 3606 4736 3416 5153 * 4578 56 52 4807 * 0 * * * 10493 3008 0 R 57 4690 5037 4981 3780 4465 * 3190 4155 3163 4747 5293 4574 4935 4575 2576 5510 4477 4557 * 4401 57 44 5069 * 560 1635 * * 10493 2673 0 I 58 4430 6858 4785 4188 5873 5530 3099 4437 3683 3626 5271 3805 5136 5365 3953 4167 3246 3391 7116 6046 58 63 4554 * 3577 126 * * 10493 3369 0 H 59 3744 5435 5996 3552 5690 4065 1695 7097 4144 5378 7043 3725 5054 4906 4553 4551 5518 5182 * 4502 59 68 4442 * 1647 555 * * 10493 3605 0 S 60 4460 4963 4849 3547 6638 3919 2920 7122 3380 5312 5867 4225 4324 5467 4426 3518 3076 4785 6444 5489 60 20 6188 * 1297 754 * * 10493 1641 0 D 61 5166 5270 4149 3130 6738 3007 4600 4380 2910 4782 5866 4988 4138 5474 3920 4668 3684 4176 * 5892 61 31 6138 7153 2890 209 * * 10493 1758 0 E 62 3943 5857 4375 2644 6989 5327 5843 5856 3009 4474 5875 4311 3820 4583 3675 3985 3915 4530 6707 4947 62 10 7196 * 1000 1000 0 * 10493 1000 1000 R 63 3361 5820 4168 4701 4742 5708 6001 5956 2208 3922 5489 4846 3947 5527 2998 6739 4302 5538 5967 4213 63 72 4636 6912 3467 137 * * 10493 3366 0 P 64 5326 4604 4207 5035 5937 6895 4061 4536 4016 3720 5176 4622 2571 4286 3961 4106 4318 4036 * 3997 64 86 4295 7146 3942 97 * 0 10478 3833 1000 F 65 6445 3126 * 5628 2389 6842 2774 6000 5877 4216 6894 4605 6458 * 4047 6116 5753 4627 5411 2299 65 11 7034 * 1000 1000 * 0 10474 1000 1674 K 66 4290 3884 4591 3219 7022 5456 5372 5381 3565 4492 4652 6835 3818 4011 3347 3803 3305 3961 * 6990 66 56 5788 5669 2807 222 * 0 10474 1743 1674 C 67 * 384 6437 6931 4658 * 6910 5964 4387 6911 * 6664 6659 * * 6821 6586 7000 * 4414 67 0 * * * * 969 1032 10455 0 2677 Q 68 5705 6591 3827 2535 6741 4683 4831 * 3735 5378 * 3859 2806 4273 4331 3236 3778 5626 6839 5404 68 0 * * * * 0 * 10472 0 1677 I 69 5030 4201 4221 3284 4605 3768 4094 3260 5401 3297 5448 7048 * 3806 7080 5346 4940 2830 6521 4725 69 11 7006 * 1000 1000 * * 10493 1000 0 C 70 * 246 5847 5166 * 5308 6882 6709 6609 * * * 5572 * * 6894 * * * 5124 70 0 * * * * * * 10493 0 0 P 71 6087 * 3101 4498 6973 1528 5076 * 3941 4609 6810 4290 4208 4492 4188 3825 5479 6980 6444 6925 71 17 * 6444 * * * * 10493 0 0 Y 72 5442 5888 5630 4245 4233 * 6074 6936 1161 5180 5459 6440 * 4311 3478 4903 * 5073 6014 3589 72 39 5231 * 2116 378 0 * 10459 2447 1000 A 73 2768 4678 5806 5278 6739 3928 6754 4632 3635 6001 5955 5795 5384 6145 3316 2671 3002 3392 * * 73 51 4857 * 2438 294 * * 10493 2770 0 S 74 4586 6130 * * 410 * * 5781 * 5309 6809 7040 * * * 5609 5020 6675 * 3823 74 0 * * * * * * 10493 0 0 R 75 3597 6476 4991 5947 6129 3773 5162 4968 2870 4623 6056 5087 3753 7097 3918 2479 3094 4469 * * 75 14 6709 * 3170 170 * * 10493 1000 0 N 76 5494 5242 4230 6172 5840 6866 3544 6009 3497 4485 7039 4535 * 3531 2495 2951 3031 5856 * 4638 76 0 * * * * * * 10493 0 0 S 77 4127 * 7066 4463 7045 4818 5165 * 1826 3751 4879 4332 3874 3647 3258 3426 * 6866 6945 5884 77 0 * * * * * * 10493 0 0 S 78 3308 5114 3474 4516 5320 4327 4695 5878 4351 5118 * 4032 4702 4200 4347 2433 4548 4537 6015 4696 78 12 * 6925 * * * * 10493 0 0 Q 79 3761 * 4347 4969 5907 7071 2743 4346 4212 4762 * 3402 6802 4114 4697 2533 4262 7454 7025 3418 79 0 * * * * 0 * 10483 0 1000 L 80 6653 5759 * * 4439 * 5678 5434 6822 537 4104 * * 7196 4963 * * 7063 5331 4172 80 0 * * * * * * 10493 0 0 T 81 4415 7181 4948 3979 * * 4986 3773 2071 4546 5958 4168 * 4367 2831 4712 3680 3963 * 5382 81 0 * * * * * * 10493 0 0 V 82 4317 * 5640 3398 6521 * 5951 4008 3094 5081 5974 4667 * 3595 1868 3493 4992 3906 * * 82 0 * * * * * * 10493 0 0 H 83 * * * * * * 0 * * * * * * * * * * * * * 83 36 5361 * 1521 618 * * 10493 2336 0 L 84 4534 * * 4251 5942 * 6780 3468 3693 2698 2063 6632 * 2571 4019 6615 * 4329 * 5808 84 32 5493 * 0 * * * 10475 2270 0 R 85 4977 * 6679 4675 6395 * * 5388 1817 3874 5783 7039 * 3539 1805 4954 4398 5265 * 5164 85 42 5125 * 0 * * * 10470 2396 0 S 86 5176 6709 * 6747 6816 * 6659 2725 3263 4450 6628 5359 * 4869 3710 3183 1723 4384 6767 5769 86 13 6778 * 0 * * * 10230 1000 0 H 87 6667 * 6645 6600 6641 * 196 * * * 6755 6122 * * 5703 6479 * 4939 * * 87 69 * 4416 * * * * 10067 0 0 T 88 4654 * 6448 6454 * 6115 2729 4832 * 4647 * 4634 5681 6409 5460 2434 1353 5250 * * 88 0 * * * * 974 1026 9707 0 2909 G 89 * * 3887 6076 * 634 6155 * 3751 * * 4115 * 5255 4952 4658 6090 6133 * * 89 0 * * * * 0 * 9606 0 1731 D 90 * * 3362 494 * 6182 * 5005 4500 * * * 5886 6264 4621 * 5867 5962 * * 90 0 * * * * * * 9301 0 0 S 91 4767 * 5656 5860 * * 5709 * 841 5485 5827 4581 4869 * 3860 3891 3704 * * 5661 91 29 5672 * 1000 1000 * * 8898 1000 0 G 92 4569 4624 * * * 3947 5262 5470 3312 4674 * 3922 800 * 5409 * * * * * 92 41 5167 * 2322 322 * * 8461 1000 0 P 93 4681 * * * 3034 * 3445 * * 4906 * * 1453 * 5060 * * * * 1650 93 0 * * * * * * 7657 0 0 S 94 3829 * * 3477 * * * * 3451 5054 4508 4667 4918 3855 * 1309 3434 * 4771 * 94 0 * * * * * * 7327 0 0 S 95 * 112 * * * * * * * * * * 4687 * * 4810 * * * * 95 0 * * * * * * 7088 0 0 G 96 * * * * * 0 * * * * * * * * * * * * * * 96 0 * * 0 * * * 5476 0 0 //