HHsearch 1.5 NAME c2dl8A_ FAM FILE c2dl8A_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2dl8A_.a3m DATE Wed Mar 10 13:52:11 2010 LENG 72 match states, 72 columns in multiple alignment FILT 125 out of 2861 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.8 EVD 0.4545 0.8389 SEQ >ss_dssp CCCCSSCSCEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSSSCCCC >sa_dssp EEEEEEEECDDADADDEBECEEEEBADBEEDCEADADEDCDEDCBDBEBEEEECCABCEDAECDEDEDEEEE >ss_pred CCCCCCCCCEEEEEEECCCCCCCCEEEECCCCEEEEEEECCCCEEEEEECCEEEEEECCEEEEEECCCCCCC >ss_conf 987888883799994032788886721748999999995768879999699289994344899715887789 >Consensus gssxxxxxxxxaxalxdyxaxxxxeLsfxxGdxixVxxxxxxxWwxxxxxgxxGxvPxxyvxxxxxxxxsxg >c2dl8A_ GSSGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPSSG >UniRef50_C3Z4D0(149-217:281) Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3Z4D0_BRAFL E=3e-05 s/c=0.72 id=20% cov=97% ATDSESAEPEQYRAIAAYQSMDDTEISLEAGDTVDVIKKNENGWWYVWIGKDEGWAPGSYLEPIDHDPQ--- >UniRef50_C3YR04(473-543:565) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YR04_BRAFL E=2e-15 s/c=1.18 id=19% cov=100% AKKGRNADRRYAKVLYPYRPTEDNELCLEVDDVIEVLEGEDGGWCLGYLRGRIGLFPSNYATFLTASEAST- >UniRef50_B0EL68(141-193:603) Putative uncharacterized protein n=2 Tax=Entamoeba RepID=B0EL68_ENTDI E=2e-05 s/c=0.94 id=20% cov=75% --------PCRCISRYDFIATSDKEVSFCEGDEMIALSSDLKWVYVQHPENGFGYIPTNYV----------- >UniRef50_Q3MIE5(14-70:859) Dock2 protein n=23 Tax=Euteleostomi RepID=Q3MIE5_RAT E=0.0001 s/c=0.84 id=22% cov=76% ------------VAIYNFQGSGAQHLTLQIGDVVRIQETCGD-WYRGyliKHKMSQGIFPTSFIHLKEVT----- >UniRef50_UPI00016E2958(263-329:492) UPI00016E2958 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E2958 E=0.0005 s/c=0.68 id=19% cov=82% --DGGVGRTMRARASHQPAASNRTLLPFSKGEMITVLVPQPRKGWlygQAESSTQQGWFPASF------------ >UniRef50_Q6BNH5(176-248:641) DEHA2E21670p n=4 Tax=Saccharomycetales RepID=Q6BNH5_DEBHA E=6e-09 s/c=0.85 id=21% cov=94% ----NSNQTLYAVTLYEFKAEREDELDIIPGENLIICAHHAFEWFIAKPINRlggPGLVPVSYVKIIDLVNPSN- >UniRef50_UPI0000523E1B(148-206:322) PREDICTED: similar to Crk-like protein n=1 Tax=Ciona intestinalis RepID=UPI0000523E1B E=1e-05 s/c=0.86 id=22% cov=75% --------PFLVRVSADFVAKNGNQLSCVCNEELEVFEIIDKHWWRARNGlGKMGRVPSTCV----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1608 * * * * 573 * * * * * * * * * * * * * * 1 0 * * * * * * 4622 0 0 S 2 5066 * 4670 * * 3372 3930 * 3137 * * * * * * 929 2944 * * * 2 0 * * * * * * 5658 0 0 S 3 2786 * 3333 * * 3748 5415 * 5349 * * * 4304 3376 * 1181 4461 * * * 3 0 * * * * * * 6046 0 0 G 4 3986 5368 * 4551 * 1323 4491 5721 5384 * * 3979 4466 * * 2237 4610 5564 * * 4 0 * * * * * * 6133 0 0 S 5 4826 * 5397 2953 * 3613 5765 * 4914 5468 * 3316 4199 4738 4018 1674 3871 5637 * * 5 0 * * * * * * 6302 0 0 S 6 3157 * 4105 3119 * 3541 * * 5626 * * 3730 4072 4170 * 1724 4362 4419 5637 * 6 0 * * * * * * 6302 0 0 G 7 2897 * * 5724 * 1187 5460 5884 5782 * 4803 4756 4980 4093 * 3087 4804 4911 * * 7 0 * * * * * * 6377 0 0 E 8 5094 * 2530 2042 5763 * * 5357 4927 4839 * 5048 5167 3323 4695 2741 3700 * * 5580 8 103 4378 5580 1378 701 * * 6414 2163 0 P 9 5737 * 4432 4618 6081 3844 5971 5817 3791 * * 6321 1458 4176 3822 3942 3772 4402 * 5992 9 41 5165 * 2035 404 0 * 6571 1612 1000 I 10 6180 4468 6125 5263 3852 5580 * 3976 4365 2596 3244 * 5278 5436 3644 5134 * 2016 * 5445 10 139 4131 4856 1781 496 * * 6636 2891 0 E 11 * 4459 * 3085 * * * 5309 3348 2891 5451 6190 6598 2472 3033 4209 4594 4879 6518 3494 11 11 6979 * 0 * 0 * 6711 1000 2294 A 12 782 4593 * * 5150 4395 * 5329 * 4558 4932 * * * * * * 2890 * 3917 12 34 5442 * 1771 500 * * 6706 1661 0 I 13 * * * 5015 * * * 2835 2827 4323 * * * 4293 1878 * 3643 2281 * 5096 13 14 6679 * 2322 322 * * 6858 1000 0 A 14 750 6559 * * * 5265 * 5872 * * 6729 * * * * 5238 4163 2114 * 5115 14 9 7284 * 1000 1000 * * 6955 1000 0 K 15 6316 * 5926 6205 * * * 2967 3064 1222 4521 6397 5890 4608 6166 4960 4726 3572 * * 15 0 * * * * * * 6956 0 0 F 16 3858 4490 6039 4784 2363 5800 3683 * 6313 6509 6731 6040 * 6594 7148 6095 7017 6997 4529 1301 16 0 * * * * * * 6969 0 0 D 17 4191 * 1096 4365 * 6015 6084 * 5307 * * 3007 3838 6358 5616 3284 4855 * * 6732 17 30 6578 6632 1000 1000 * * 6971 1000 0 Y 18 * 6749 * * 1315 * 4540 * * * * 6169 6329 * 4654 * * 6122 4499 1247 18 41 5140 * 1237 797 0 * 6964 2161 1000 V 19 4930 5307 3376 3383 6755 * * 4299 3157 4978 5976 3766 * 3830 4309 4146 3078 2712 * 6944 19 9 7303 * 0 * * * 6975 1000 0 G 20 1275 * * * * 2629 * * 5601 * * 5228 2315 * 6332 2887 5086 * * * 20 0 * * * * * * 6975 0 0 R 21 5077 5815 4155 3001 * 5025 5576 6901 3166 6182 5052 4276 4459 2835 4059 3137 3289 4541 * * 21 23 6000 * 1000 1000 * * 6975 1757 0 T 22 4161 * 2600 3065 * 3402 5743 6849 4630 4819 * 2713 6300 4448 4459 3395 4067 4891 * 5886 22 8 7571 * 3000 193 * * 6975 1000 0 A 23 3757 6779 2465 2401 * 3943 * 5946 4932 * * 4430 2474 4353 4643 3714 4905 7057 * * 23 26 5783 * 2545 271 * * 6975 1701 0 R 24 5328 5535 1980 3102 * 3134 5284 * 4597 6127 * 2773 * 3677 4682 4675 4066 7605 * 5582 24 49 4897 * 1145 868 * * 6975 2474 0 E 25 6263 4775 3258 793 5385 6849 5598 7003 5610 4956 * 5232 * 3134 * * 6096 * * * 25 33 5464 * 1588 583 * * 6975 1643 0 L 26 6215 * * * * * * 2989 * 545 4126 * * * * * 6561 3217 * * 26 0 * * * * * * 6975 0 0 S 27 4633 6355 4943 3890 * 4834 7084 * 6267 5944 6193 4248 3760 4607 5006 1074 3495 * * * 27 0 * * * * * * 6975 0 0 F 28 6471 5637 * * 1192 * * 3424 * 2055 4591 * * * * * * 2684 * * 28 0 * * * * * * 6975 0 0 K 29 4655 6175 4631 3209 5634 7281 4439 5604 2133 5395 5159 4209 5072 3748 4482 3398 3992 3959 * * 29 0 * * * * * * 6975 0 0 K 30 3124 6655 5028 2758 * 6761 * 4280 2117 * * * 3729 4127 3378 5822 4665 3062 * * 30 0 * * * * * * 6975 0 0 G 31 6655 * 2889 6479 * 533 6968 * 6215 * * 3186 * 6211 6951 * * * * * 31 0 * * * * * * 6975 0 0 A 32 5072 * 951 1831 * * * * 6807 * 7108 7016 * 3475 6750 5819 5750 6332 * * 32 10 7108 * 0 * * * 6975 1000 0 S 33 5370 * 6332 3236 4890 * 6155 2519 4513 4042 4583 5628 5166 4656 3650 4961 3491 2493 * 5462 33 0 * * * * * * 6975 0 0 L 34 * 6879 * * 3323 * * 1885 * 1875 5494 * * * * * * 1785 * 4801 34 0 * * * * * * 6975 0 0 L 35 5473 * 4961 2712 5096 * 4505 3538 3463 3841 7111 6042 * 5877 4076 4415 2970 4220 5381 3034 35 0 * * * * * * 6975 0 0 L 36 6175 5946 7059 6193 5197 * * 2240 * 2742 * * * * * 6267 * 895 * 6691 36 26 7183 6471 3000 193 * * 6975 1000 0 Y 37 6188 5570 5434 7091 4441 * * 2125 * 1541 6178 7098 * 5071 6084 5393 3718 3448 * 4089 37 46 4990 * 1609 573 0 * 6972 2477 1000 Q 38 6426 5787 2613 1924 * 4360 5611 * 4403 * * 3585 * 3861 3907 3086 6144 4138 * 5692 38 49 4899 * 1570 593 * * 6975 2765 0 R 39 5978 5892 3290 4329 6125 6000 5047 4687 2177 5286 4458 5104 4386 4085 3213 4424 3802 5177 6267 5545 39 62 5346 5849 1535 611 * * 6975 2308 0 A 40 4627 5597 3032 3566 * 4527 4950 3961 5320 4581 4982 3647 5204 4016 4474 3365 3646 3831 * 4933 40 43 5074 * 1096 910 0 * 6960 2826 1733 S 41 4206 * 1877 3220 5714 5303 6108 5583 4544 5132 * 2429 4258 5522 5438 3568 4376 * * * 41 74 4323 * 1478 641 * * 6975 3382 0 D 42 4095 7179 1994 3325 6426 3339 7174 * 3752 * 7171 3811 3461 4319 4313 3676 4792 6901 * * 42 113 4132 5760 1142 871 * * 6975 3555 0 D 43 7011 6605 2622 3267 * 1705 5150 * 5565 5918 5748 3448 6449 5439 6491 4450 5783 * 3282 5615 43 47 4976 * 1515 621 0 * 6951 2592 1852 W 44 * 6267 6943 6991 5009 4419 * * * 4742 5758 6456 * * 6848 * * 4324 431 5290 44 47 4971 * 920 1084 * * 6975 2650 0 W 45 4385 4256 * * 3903 * * 5389 5076 3026 4595 * * 5948 6215 7029 5074 6030 1165 3519 45 42 5114 * 1627 564 * * 6975 2398 0 E 46 4357 6022 7009 2943 5090 6121 * 3918 2914 3094 5984 5841 * 4016 3400 6265 4675 3670 4384 3838 46 8 7504 * 1000 1000 * * 6973 1000 0 G 47 2306 4109 * 5127 * 1476 5644 7168 5456 6696 7299 * * 5370 4438 * 6556 2408 5908 * 47 103 3866 * 1466 648 * * 6966 4032 0 R 48 4279 5017 * 2582 * * 5192 5070 2899 5778 7104 4711 * 3679 2684 3376 3826 3943 7013 5480 48 60 4628 * 1714 525 * * 6966 2955 0 H 49 4799 4189 4349 7089 6696 6918 4749 3839 3308 2737 * 3861 4955 5968 3534 3422 6612 3079 * 4275 49 146 3374 * 776 1266 * * 6966 4270 0 N 50 5604 * 2764 3689 6853 2814 4427 6421 4061 5645 * 2393 5733 4752 4284 3791 3488 7230 * * 50 153 3311 * 1151 863 * * 6966 4413 0 G 51 * * 4879 4489 6933 998 * * 4298 5956 7104 2910 5832 4820 5508 3272 6392 * * 6052 51 72 4352 * 2120 377 * * 6966 2957 0 I 52 4360 5574 7013 2662 7173 4752 6776 6143 2658 6116 6548 4665 7031 2471 2274 4509 5040 7595 * * 52 69 4413 * 1125 885 * * 6966 3071 0 D 53 5509 * 7062 2874 4061 * * 4890 3074 6478 5410 5670 5481 3331 3134 3740 3791 2787 6263 5230 53 31 5565 * 1816 482 * * 6966 2231 0 G 54 6292 * * * 5501 80 * * * * * * 5733 * * * * * * * 54 27 5733 * 0 * * * 6966 1000 0 L 55 6623 6803 * * 2619 * 6873 3536 5959 1882 6050 * * 5472 6639 7042 7039 4454 2593 2628 55 0 * * * * * * 6966 0 0 I 56 4289 5883 * * 1574 * * 2767 * 4267 * * * * * * * 1332 * * 56 0 * * * * * * 6966 0 0 P 57 5943 * * * * 5965 5383 * * * * * 124 5885 * 6723 * * * * 57 0 * * * * * * 6966 0 0 H 58 2550 7190 * 4642 7339 3940 5405 4080 3523 4407 * 6015 * 6933 3587 2004 4461 3698 * 6008 58 0 * * * * * * 6966 0 0 Q 59 3420 5849 4443 7134 * * 5853 * 4745 * 7254 1823 6178 5376 5701 1677 3320 6875 * 6183 59 25 * 5861 * * * * 6962 0 0 Y 60 * 4373 * * 2446 * 4725 5792 * 5477 5448 * * * 5012 6189 6075 * * 719 60 44 6540 5679 0 * * 0 6947 1000 1062 I 61 5529 5428 * * 4737 * * 2437 * 2215 6600 * * * * * 5303 1053 * * 61 44 6125 6012 0 * * 0 6940 1410 1824 V 62 4833 6137 5383 1786 * 7011 5051 6390 2815 * 4204 4852 * 3563 3671 4288 3645 4021 * * 62 11 7087 * 2585 263 362 2171 6850 1000 2607 V 63 5102 * 4682 5004 4503 7016 5785 2257 4941 2072 5236 * 3960 6862 5827 4904 5470 2488 * * 63 0 * * * * * 0 6937 0 1000 Q 64 6835 * 5772 3525 6567 * 6586 2405 4024 2584 3781 6290 4826 3945 5623 5626 3828 3012 * 5185 64 28 6648 6734 2807 222 0 * 6921 1000 1000 D 65 3910 * 1996 2475 * 4251 6070 5834 3963 * * 4978 4373 4778 * 3189 3481 5513 * 5935 65 34 5411 * 1503 628 * 0 6880 1653 1000 T 66 3450 * 2485 2630 * 5146 6422 5227 3559 5793 6228 4790 4752 6576 4190 3352 3293 4413 * * 66 0 * * * * * 0 6894 0 1000 S 67 2685 * 2540 5151 6476 5368 * 6379 6055 4663 * 4008 4754 5155 6086 2519 3355 3877 * 4054 67 20 6204 * 3000 193 0 * 6839 1000 1000 G 68 3582 * 2098 3568 5592 2629 * * 5823 * * 5456 3505 4950 * 4421 2524 4847 * * 68 0 * * * * * * 6729 0 0 P 69 3644 * 3520 5590 * 4853 * 5592 5822 5587 * * 1217 3691 4087 3154 4659 * * * 69 28 5690 * 0 * * * 6605 1000 0 S 70 3768 * * 5864 * 5793 * * 5314 5691 5877 5393 * * 3883 741 2835 * * * 70 0 * * * * * * 6417 0 0 S 71 3098 * 3312 4270 * 4860 * * 3882 * 5288 3260 * 5084 * 1499 3118 * * * 71 0 * * * * * * 5840 0 0 G 72 3765 * * * * 110 * * * * * * * * * * * * * * 72 0 * * 0 * * * 4925 0 0 //