HHsearch 1.5 NAME c2dk6A_ FAM FILE c2dk6A_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2dk6A_.a3m DATE Tue Mar 9 02:19:27 2010 LENG 102 match states, 102 columns in multiple alignment FILT 114 out of 128 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.8 EVD 0.4632 0.8818 SEQ >ss_dssp CCCCCCCCCCSSCTTCCCCEEEEECCSSSCCEECCCBSSTTCBCCHHHHHHHHHHCTTSEEEEEETTEEEEEETTTTEEEESSSCCEEEEEEEESCCSSC CC >sa_dssp EEEEEEEEEEEEEEEDEDEDAACCDBEEDEDDCBDEDEEDECDCDCECABEBCEECDECDCEBEBCEDDCCABAEEDCBDBECEEDECDBDDCCDEEEDE EE >ss_pred CCCCCCCCCCEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCEEEECCCCCEEEEEECCCCCCCC CC >ss_conf 9765456720204489973899985799877773821257555348999999972998538999589519998466689945698695577257414798 99 >Consensus xxxxxxxxxvrrxstxstxWxWxwxdxxGxWxxYxxxxxxxxxxxSxxIExayxxxxxxxvxxxxxxxxYxIDFxxMxQxnxxtgxxRxVrRrpxxsxpx xg >c2dk6A_ GSSGSSGNEVDDMDTSDTQWGWFYLAECGKWHMFQPDTNSQCSVSSEDIEKSFKTNPCGSISFTTSKFSYKIDFAEMKQMNLTTGKQRLIKRAPFSSGPS SG >UniRef50_Q4SRR8(346-444:702) Chromosome undetermined SCAF14498, whole genome shotgun sequence. (Fragment) n=3 Tax=Clupeocephala RepID=Q4SRR8_TETNG E=3e-08 s/c=0.60 id=23% cov=72% -----------------TVWKYYCRDNFG-WREYSEQ------PVVKLIEEATVRG-LKEVRFITLQNQYILNIREGFQQNAIFGFRRQIKKRPMFT--- -- >UniRef50_Q5U400(343-446:784) Zc3hdc1l protein (Fragment) n=7 Tax=Euteleostomi RepID=Q5U400_DANRE E=5e-24 s/c=1.08 id=24% cov=85% ---------VRRLSTVSsvlqpsfiltTEWLWFWEDEFGNWIQYASADggHKISSITSAELEQKYQADQSAVLEFSAGSQTYTLSFQDMIQTNKQYKTKK VIRRRPK------- >UniRef50_Q6NVS4(17-119:592) Deltex homolog 2 (Drosophila) n=4 Tax=Euteleostomi RepID=Q6NVS4_XENTR E=2e-12 s/c=0.71 id=25% cov=78% --------------TVSNQWNasvavWEWQDEHNKWRPYSSAVSNYIEQYmvSYSQQKGFRAyGNSNSISLGKADpklAPYIIDIPTLSQFRQDTGTMRS VRKS--------- >UniRef50_Q17L78(90-157:622) Deltex, putative n=8 Tax=Culicini RepID=Q17L78_AEDAE E=9e-07 s/c=0.80 id=22% cov=67% -----------------TKWEW-CGSSGNDWHSYTMEVQ-------CVIEEAWARgDQTIDLTKSHLNLPYTINFLNLTQIRHQNGPLRSIRR------- --- >UniRef50_C4QJU1(391-460:3289) Ubiquitin-protein ligase, putative n=1 Tax=Schistosoma mansoni RepID=C4QJU1_SCHMA E=8e-09 s/c=0.88 id=26% cov=67% --------------ASSHNWHWF-DNQAMLWHPYTNE-------SIRIIDKSFHKGDLCAFC-DINRRPYTVEFPTMTQINLVSMHRRPV---------- -- >UniRef50_UPI000044C504(61-150:193) PREDICTED: similar to MGC80151 protein isoform 1 n=1 Tax=Ciona intestinalis RepID=UPI000044C504 E=7e-12 s/c=0.80 id=27% cov=83% --------KADQTDTPSSsntnpKYVWFYQGYNGWW-QYDER-------TCAEIEAAYL-TEVKSVDLMIAGSVYVIDFENKVQfQRNRNSRKRKIKRD- IVSAPKKG >UniRef50_B7PJZ8(74-164:451) Deltex, putative n=1 Tax=Ixodes scapularis RepID=B7PJZ8_IXOSC E=8e-10 s/c=0.71 id=23% cov=82% -GSSAAGSTVRRMlyppdSAPAQGVSWQWLaNNKATWYTY-------STPLVCLIEKLRLQG-WSQVNLQNyyPECIYTLDFSVMVQRNNFSGFSRSVRR ---------- >UniRef50_A4HEZ5(110-205:584) Putative uncharacterized protein n=3 Tax=Leishmania RepID=A4HEZ5_LEIBR E=2e-07 s/c=0.59 id=27% cov=77% ----------------ETTFGWFVEDleRPGTWEPYTKESADR-------LEDAFLS-MRNTCTVVMKKRSYIVDLQTMQQRpaasagtantySAQQQRT REVKRAPVvtYTDPNTG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1546 0 0 S 2 * * * * * 1075 * * * * * * * * * 929 * * * * 2 0 * * * * * * 2595 0 0 S 3 * * * * * * * * * 2361 2157 * * * * 783 * * * * 3 0 * * * * * * 2860 0 0 G 4 * * * * * 2269 2361 * * * * * * * * 1420 2157 * * * 4 0 * * * * * * 2860 0 0 S 5 1563 * * * * * * * 2466 * * * * * * 1057 * * * * 5 0 * * * * * * 3133 0 0 S 6 2878 * * * * * * * * 1921 * 2919 * * * 2067 2127 * * * 6 0 * * * * * * 3521 0 0 G 7 * * * 3230 * 1735 * * 3354 * * 2408 * * * 1705 * * * * 7 0 * * * * * * 3820 0 0 N 8 * * 1562 * * * * 4030 * 3722 * 1438 * * * 2686 * * * * 8 0 * * * * * * 4188 0 0 E 9 * * 4608 2516 * * * * 1056 * * * 3465 3474 4047 * 4009 * * * 9 0 * * * * * * 4500 0 0 V 10 3800 * * * * * * 4435 * 3549 * * * * * * * 328 * * 10 0 * * * * * * 4807 0 0 D 11 * * 3666 3361 * * * * 2834 * * * 4413 * 850 5258 4163 * * * 11 38 5258 * 0 * * * 4807 1000 0 D 12 4718 * 2222 * * * * * 4665 * * 3989 * 4775 816 * 4623 * * * 12 58 * 4665 * * * * 4970 0 0 M 13 3451 * * * * 4727 * 2916 * 1215 2176 4289 * * * * 4828 * * * 13 58 4671 * 2322 322 0 * 5013 1000 1000 D 14 3862 * 1922 * * * * * * * 4800 * * 3625 * 960 4777 * * * 14 0 * * * * * * 5287 0 0 T 15 3072 * 3636 * * 5030 * * * * * * * * 5352 2298 970 4982 * * 15 0 * * * * * * 5526 0 0 S 16 4577 * * 4048 * 2022 5372 5643 3462 * * 5349 1919 * * 3055 * 3220 * * 16 36 5323 * 3170 170 * * 5614 1000 0 D 17 4883 * 3197 4195 * * 4238 4673 4660 * * 4383 * * 4285 852 5821 * * * 17 546 1859 4660 3378 146 * * 5742 2885 0 T 18 4850 * 5310 * * 4541 5407 6261 * 4329 * 4196 4780 5126 * 2980 895 * * 5222 18 67 4465 * 2108 381 0 * 5821 1538 1000 Q 19 5638 * 4579 1905 * 5387 * * 2377 * * 4362 3478 2785 * * 3498 3595 * * 19 0 * * * * * * 6024 0 0 W 20 4155 5164 * * 5101 * 5113 5756 * * * * * * * * 6010 4717 519 3505 20 0 * * * * * * 6234 0 0 G 21 3892 * * 4353 5446 4407 5830 2671 3140 2474 5181 4075 * 3028 3881 5613 5934 4992 * * 21 61 5335 5896 2322 322 * * 6230 1000 0 W 22 * * * * 5141 * * * * * * * * * * * * * 66 5921 22 71 * 4377 * * 0 * 6432 0 1000 F 23 * * * 2362 2092 * 5009 * * 6044 * * * 2601 * * * * * 1474 23 132 * 3511 * * 0 * 6314 0 2108 Y 24 * 3841 * * 4364 4560 * * * * * * * * * * * 4915 788 2140 24 15 * 6634 * * 0 * 6298 0 2667 L 25 4439 * 3966 2110 * 5422 * 6336 3204 2985 4328 5703 * 3307 2404 5769 * * 6564 * 25 88 4079 * 236 2729 0 * 6447 2394 1000 A 26 4323 * 1073 * * 2509 5560 * * 5398 * 2306 * * * 5038 6815 6320 * * 26 55 6315 5350 1000 1000 * * 6446 1000 0 E 27 * * 2004 1773 6251 4815 5140 * 4788 * 6265 3651 6242 4383 2988 4148 * * * 6854 27 55 * 4750 * * 889 1120 6419 0 1513 C 28 5285 4547 5292 4811 3397 5025 3192 * 4302 3404 * 2792 5127 4264 3356 3788 3674 * * 5903 28 76 * 4277 * * 413 2007 6404 0 2328 G 29 5948 * 5539 6486 * 597 6475 6152 6054 * 5335 2882 * 4728 6408 5055 6684 * * * 29 88 6141 4478 1585 585 325 2309 6386 1000 2845 K 30 4288 4889 5412 4517 6049 4786 6182 4664 2826 4758 5659 5718 * 4087 2849 4404 2588 5579 3404 * 30 0 * * * * 0 * 6375 0 2306 W 31 * * * * * * * * * * * * * * * * * * 25 5884 31 108 * 3799 * * * * 6457 0 0 H 32 * 5273 * 4318 * * 2085 3129 4012 5494 * 4012 * 4996 2700 4818 3541 4027 5048 5079 32 31 * 5548 * * 0 * 6431 0 2122 M 33 3762 * 5430 2373 * * * * * 5101 4597 4524 2282 2906 3783 3573 3316 * * * 33 0 * * * * 0 * 6457 0 1295 F 34 * * * * 3864 * * * * * 5612 * * * * * * 5973 * 160 34 257 3843 3415 870 1143 * * 6457 2710 0 Q 35 5260 * 2025 3417 * 2258 * * 5743 6331 * 5575 3964 4010 4505 2994 4164 * 5513 * 35 217 3946 3742 837 1184 * 0 6444 2664 2772 P 36 4891 * 4193 2898 * 4029 5287 * 4150 4704 3973 3310 2676 4565 4432 2701 6555 5512 * * 36 79 4227 * 526 1711 3231 162 6396 2203 3691 D 37 3666 6914 2000 2830 * 6177 4418 * * 5529 * 4890 4188 3195 2911 3945 4494 * * * 37 317 5435 2523 1000 1000 3336 150 6417 1553 3539 T 38 4662 * 3687 6008 * 4297 4020 3666 5102 5345 * 3321 * 3919 4395 3978 3465 2122 * 5332 38 193 4971 3417 1389 694 3660 119 6301 1533 4408 N 39 4382 4555 3921 4564 * 2695 3437 * 4014 * 4310 2383 * 3630 5177 3626 4036 * * * 39 254 * 2631 * * * 0 6179 0 4709 S 40 4581 * 4337 5101 6281 2860 * 3688 2997 6027 4827 4484 3679 4458 4728 2224 4496 6489 * * 40 235 4760 3142 1439 664 4704 56 5931 1607 5210 Q 41 2901 * 4301 4642 * * * 3991 3474 * * 3512 4250 2823 5076 4358 3223 3285 * 4244 41 337 3852 2847 1203 822 2253 340 5744 1986 5384 C 42 2821 3266 * * * 3813 * 2903 * 4561 * 4136 * * * 1461 3518 * * * 42 0 * * * * 3467 137 5517 0 5478 S 43 6655 * 5661 2791 3958 5698 5846 * * * * 4539 5705 5095 6502 1531 2159 * 4256 * 43 37 5314 * 4858 51 3398 144 5586 1000 5468 V 44 5743 * * 5693 5907 * * 1994 * 3202 5097 * 2778 3695 4116 * 5892 2191 5544 5757 44 0 * * * * 1588 583 5651 0 5314 S 45 3754 4128 2878 5307 * 6119 * 5979 4542 5712 * 5695 * 6002 * 2612 1573 4620 * 4647 45 96 4731 5238 1648 554 1983 421 6058 1624 5047 S 46 * 3594 * 6111 * * 5010 4351 * * * 5453 6306 * * 486 * 4786 * 4759 46 12 * 6863 * * 1575 590 6123 0 4313 E 47 3570 3672 3479 3020 * * 4276 6746 3043 7441 * 4582 * 3359 2745 3368 5333 * * 5247 47 16 * 6475 * * 1075 929 6271 0 3956 D 48 3951 * 2224 2820 4321 * 5950 3584 6202 3030 4598 * * * 5714 4236 4304 4091 * 3810 48 29 * 5648 * * 0 * 6319 0 3179 I 49 * * * * * * * 898 * 1553 * * * 6143 * 4944 5862 4086 * * 49 0 * * * * * 0 6391 0 1000 E 50 * * 4128 313 * * * * * * * 5071 * 3615 6238 * 6221 * * * 50 17 * 6421 * * * 0 6391 0 1000 K 51 2656 * 3802 3205 * * 5744 * 2743 5110 6526 2937 * 2894 3710 4014 5075 5627 * * 51 0 * * * * * 0 6378 0 1596 S 52 1192 5941 * 5330 4934 4748 4531 5353 5546 3496 * * * 4721 5217 3235 * 4423 * 4163 52 16 * 6477 * * 918 1087 6378 0 1596 F 53 * * * * 1536 6189 4031 5122 * 6728 * 5045 * 6344 6069 * 5950 6554 3882 1358 53 74 6078 4833 1374 703 979 1021 6431 1569 1414 K 54 3609 * 6795 6127 * * 5093 5023 3317 2311 6218 4698 * 1675 3641 5690 5469 5198 5776 * 54 49 * 4908 * * 420 1984 6388 0 2369 T 55 2265 * 6618 3679 * * * * 2729 4372 * * * 3183 2620 2387 4910 7086 * * 55 216 4140 3607 1350 718 449 1902 6435 2689 2168 N 56 * 4810 2296 * * 1570 * * 7145 * * 1697 * 5511 * 4304 5430 * * 6301 56 193 5381 3306 0 * 248 2662 6372 1444 3219 P 57 5496 * 6316 2816 5562 4437 * 6446 4406 * 4824 4443 1815 2723 3225 5019 4984 6493 * * 57 68 * 4450 * * 199 2955 6360 0 3090 C 58 4947 6662 2649 4242 * 5570 5386 * 5594 3565 * 3525 4817 4155 2474 3866 3034 5629 6039 6525 58 157 4984 3809 1444 661 0 * 6415 1776 2630 G 59 3023 5433 4918 5418 6148 1951 6565 4563 3419 6181 * 4037 3459 6397 * 3650 3524 5596 6218 * 59 90 6672 4306 0 * 0 * 6453 1000 2739 S 60 5128 5825 3346 2566 * 4248 6489 5597 * 4599 * 4728 * 5004 * 2587 2544 3080 5408 6346 60 33 * 5459 * * 0 * 6436 0 2361 I 61 5390 3493 * * 4180 6900 5754 2811 * 2088 4906 * * 5767 * * * 1437 * 7268 61 39 5659 7250 1088 917 0 * 6446 1567 1621 S 62 6678 6439 3068 4028 5787 5292 5114 5081 3741 5379 6442 3242 4235 3767 4438 2054 3909 * * * 62 34 6417 6439 3459 138 * 0 6467 1000 1000 F 63 * * * * 1360 * 6610 3215 4437 1847 6261 * * 6334 * 4900 * 3191 * * 63 28 5727 * 1000 1000 978 1023 6705 1000 1525 T 64 4972 6539 5545 4432 * 4738 4941 4361 3989 3132 4806 4708 * 3353 4520 2665 2313 5677 * * 64 0 * * * * 0 * 6735 0 1000 T 65 1960 * * * * 6364 6015 2374 4284 4220 4715 6141 4221 * * 3872 3538 2832 * 5890 65 21 6141 * 1000 1000 * * 6732 1000 0 S 66 2798 4880 5063 5803 5376 1682 4987 * 5263 2699 7656 4016 5298 4400 5409 4510 6397 * 6921 * 66 9 * 7406 * * * * 6732 0 0 K 67 5539 * 4970 4421 * 1459 3679 * 3807 5313 6416 3662 5106 5055 3312 3218 * * * 8179 67 65 4510 * 2453 291 * 0 6735 1863 1000 F 68 4548 6122 6440 4645 2776 4923 3289 * * 4758 6567 3888 * 3235 2232 4794 4471 6672 5951 3860 68 56 4727 * 3057 185 0 * 6735 1533 1000 S 69 6525 5459 4761 * 6698 6833 5060 3708 3306 4874 6714 3349 2452 3020 4393 4083 3868 3942 * 6020 69 0 * * * * * * 6653 0 0 Y 70 * 4885 * * 5102 * * * * 6353 * 5386 * * * * * * * 151 70 0 * * * * * * 6574 0 0 K 71 6545 6559 * 2717 * * * 2199 4430 4506 7457 6550 * 4360 4810 4030 2019 3330 * 6628 71 18 6316 * 2807 222 * * 6574 1000 0 I 72 5248 * * * 5886 * * 1264 * 1899 * * * * * * * 1878 * * 72 0 * * * * * * 6574 0 0 D 73 * 6763 777 5510 * * 4585 6419 5695 6853 * 2572 * 6261 5982 3489 * * * 5815 73 13 * 6770 * * * * 6574 0 0 F 74 * * * * 581 * * 4537 6551 2034 * * * * * * * 6897 * 5299 74 31 5545 * 0 * * 0 6552 1584 1000 A 75 3343 6484 3937 3776 * 4298 4561 5367 2871 5655 5468 2862 3703 3498 4338 4492 4284 7083 * * 75 19 6273 * 2000 415 * 0 6552 1000 1000 E 76 3443 5152 3274 2941 * 4137 6332 * 6544 7091 * 2894 * 3652 5009 2305 3436 5718 * * 76 20 6156 * 1528 614 * 0 6552 1577 1000 M 77 * * * 6800 6810 4542 6273 * 4750 2845 574 5009 * 7083 * 5672 * * 5625 * 77 0 * * * * * 0 6552 0 1000 K 78 * 4747 * 4860 6492 * 4665 3586 4240 5243 3818 6002 * 3243 5346 4437 2226 2555 6499 4124 78 0 * * * * * 0 6552 0 1000 Q 79 * * * 5797 * * 6137 * * 5384 * * * 83 * * * * * * 79 34 5440 * 0 * * 0 6552 1476 1000 M 80 * 6376 * 5746 3640 * * 2546 4062 6547 4927 * * 3463 2735 * 2590 2923 * 3724 80 28 5676 * 3022 190 * 0 6550 1434 1000 N 81 5687 5387 5380 * * 5647 * * 4966 * * 805 * 5592 2103 4526 * * 6443 * 81 0 * * * * * 0 6550 0 1000 L 82 3919 6478 5448 3183 * 6820 5841 4223 2919 2409 * 4019 6594 3019 4755 5527 3915 3860 * * 82 41 6093 6190 0 * 0 * 6554 1277 1000 T 83 4433 6492 2259 3500 5625 5721 * 5582 3195 5721 6585 4224 * 3322 4320 2791 3877 5579 * 6697 83 80 4851 5678 0 * * 0 6433 1614 1000 T 84 * 6624 * 6169 4459 * 4881 * * 6546 * 5002 4230 6329 * 2449 1004 * * 3223 84 32 5525 * 617 1524 1497 631 6209 1459 1850 G 85 5747 * 6331 7204 6689 960 4736 * 3786 * 6103 3800 5260 3558 5013 4473 5304 5845 * 6327 85 14 6707 * 1000 1000 0 * 6223 1000 1257 K 86 5074 6483 * * 2988 6272 4800 4960 3520 6892 6427 4439 6490 * 3070 5332 1452 5220 * 4283 86 0 * * * * * * 6105 0 0 Q 87 6086 4325 * 4684 * 5590 6207 4235 2812 4342 3952 * * 3734 2114 3797 3668 3498 7054 * 87 79 4223 * 716 1354 * * 6105 2172 0 R 88 * * * * 5877 * * * 4453 * * * * * 153 * 5624 * 5814 * 88 44 5068 * 0 * * * 6089 1768 0 L 89 3824 * 4413 4405 * * 6589 * 2507 5550 * 5812 2420 3940 3071 2516 6048 4357 * * 89 0 * * * * * * 5754 0 0 I 90 * 5327 * * * * * 1215 * 5745 * * * * * * * 928 * * 90 0 * * * * * * 5754 0 0 K 91 * 4726 * 5795 5742 * * 5835 1968 6209 * * * 3427 873 * * * * * 91 0 * * * * * * 5736 0 0 R 92 * * * * * * * * 4806 * * * * * 53 * * * * * 92 30 5610 * 1000 1000 * * 6045 1000 0 A 93 4641 * 4745 * * * 4855 3864 4111 4996 * 5867 3697 5920 1169 2732 * 5361 * * 93 325 3280 3342 1241 794 * * 5926 2345 0 P 94 5126 * * * * * * * 3938 5151 * * 410 * * * 5734 3227 * * 94 0 * * * * 0 * 5246 0 2283 F 95 * * * 5051 1676 6781 * 3447 2588 4933 3630 5329 6428 5305 5641 5107 4900 2922 * * 95 54 4776 * 1000 1000 * * 5450 1000 0 S 96 * * 4420 4699 3677 * * * * * * * * 2581 * 2686 4936 2213 * 1912 96 145 4083 4764 1262 778 * * 5473 1400 0 S 97 * * 4853 4667 * * 4541 * * * * * 4250 5209 4030 1022 2797 3238 * * 97 0 * * * * 0 * 5067 0 1000 G 98 1554 * 4250 * * 1903 * * * * * 4129 2389 * * 3451 * * * * 98 0 * * * * * * 4932 0 0 P 99 4348 * * 3999 * * * * 4055 * * * 450 * * 3379 * * * * 99 0 * * * * * * 4073 0 0 S 100 * * * 3834 * 1836 * * 3875 * * 2307 * 2890 * 2031 * * * * 100 0 * * * * * * 4063 0 0 S 101 * * 1872 * * 3838 * * 2925 * * * * 2345 3314 2730 3697 * * * 101 0 * * * * * * 4064 0 0 G 102 * * * * * 0 * * * * * * * * * * * * * * 102 0 * * 0 * * * 3257 0 0 //