HHsearch 1.5 NAME c2dhyA_ FAM FILE c2dhyA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2dhyA_.a3m DATE Fri Mar 12 14:54:54 2010 LENG 67 match states, 67 columns in multiple alignment FILT 100 out of 104 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.4146 0.7512 SEQ >ss_dssp CCCSCCCCCCCCCCCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSSCCCC >sa_dssp EEEEEEEEEEEEEEEEDDEEBBEDADEDBEEBEDEDABDBBEECEDCDECACDDAEEDDEEEEEEEE >ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC >ss_conf 9877757886205899999999999997876499999999997599777999999951166787889 >Consensus xxsxsxxrpaxxxxxxexxxaxxxLkxMFPxxDxxvIxxVlxxxxgxvxxaidxLLxmsxexxxxsx >c2dhyA_ GSSGSSGRPARQVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGPSSG >UniRef50_Q01BC8(32-99:146) Chromosome 04 contig 1, DNA sequence n=1 Tax=Ostreococcus tauri RepID=Q01BC8_OSTTA E=5e-11 s/c=1.01 id=30% cov=85% ---ASTARPNARRPRQflhramsanaSFEESVVALKSMFPDIPELVVRTTLEARDGHVESSVEKLLQMS-------- >UniRef50_Q2H1A2(644-701:701) Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H1A2_CHAGB E=2e-10 s/c=1.16 id=29% cov=76% ---------AQRLHRAEHANVVETLAGMFPDLDRDIISDVVYQKEGRVGLAVDACLALS-------- >UniRef50_C4Y964(674-730:731) Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y964_CLAL4 E=0.0002 s/c=0.83 id=22% cov=82% ----SESGPPHLVSDEQVEKTLNQLTEIFPNLDRAVLRDVIVLKKADFDSSLDACLQL--------- >UniRef50_Q08412(86-146:411) Ubiquitin-binding protein CUE5 n=6 Tax=Saccharomyces cerevisiae RepID=CUE5_YEAST E=0.0002 s/c=0.77 id=29% cov=78% --------PARRKSEEEpskENPILQELKDAFPNLEEKYIKAVIIASQGVLSPAFNALLFLS-------- >UniRef50_A0DAV7(10-68:481) Chromosome undetermined scaffold_43, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0DAV7_PARTE E=9e-09 s/c=1.04 id=22% cov=88% -TTKTTSRQNKKRRQQQLPP--QTLYDMFPSFDKELIEQCYRSEKANIENTVSKLLELQSE------ >UniRef50_C3XWA1(34-99:2180) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XWA1_BRAFL E=0.0002 s/c=0.71 id=21% cov=99% -SSDDGAGNAAELSPKEREKLVEQLQEMFSkQLDPGVVYIVLAESDFKVEEAMEDLLMLACEADKNS- >UniRef50_UPI000178D693(19-74:1605) hypothetical protein LOC100119569 n=1 Tax=Nasonia vitripennis RepID=UPI000178D693 E=0.0006 s/c=0.81 id=28% cov=60% ---------------------------MFGTaFESDIIASVAQTCNWKLQPSIETLLSLTSTASPES- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 2364 * * * * * * * * * * * * * * 802 2107 * * * 2 0 * * * * * * 2808 0 0 S 3 * * * * * * * * * * * * * * * 667 1434 * * * 3 0 * * * * * * 2985 0 0 G 4 2955 * 2710 * * 1651 * * 2730 3011 * * * * * 2998 * * * * 4 0 * * * * * * 3326 0 0 S 5 * * 2985 * * * * * * * * 3959 * 3718 * 971 2163 * * * 5 0 * * * * * * 3531 0 0 S 6 * * * 2094 * 2985 * * * * 3319 3959 * 3718 * 2539 2140 * * * 6 0 * * * * * * 3531 0 0 G 7 2206 * * * * 2275 * * * * * * 3395 3510 * 1344 * * * * 7 0 * * * * * * 3635 0 0 R 8 * * * * * 2598 * * 3197 * * * * 3799 1023 3269 4106 * * * 8 0 * * * * * * 4137 0 0 P 9 * * * * * * * * * 3067 * 3967 526 3921 4151 * * * * * 9 50 * 4883 * * * * 4335 0 0 A 10 893 * * * * * * 4629 * * * 2994 2535 * * 3538 * 4754 * * 10 0 * * * * * 0 4630 0 1000 R 11 3561 * * 4170 * * 3729 * 3446 * * 4894 * 2566 1316 * 4550 * * 4449 11 97 3945 * 506 1758 * 0 4672 1210 1000 Q 12 * * 4704 2675 * * * * 2255 4816 * 4862 3644 3601 1755 4843 4963 * * * 12 0 * * * * * 0 4717 0 1000 V 13 4396 * * * * * * 2326 4923 2453 4407 * * * 3159 4072 5177 1780 * * 13 53 * 4795 * * 0 * 4677 0 1000 R 14 * * 4121 1947 * * 4686 * 5441 * * 4158 3797 2860 2805 2623 4318 * * * 14 0 * * * * * 0 4785 0 1000 R 15 3923 * 4280 2977 * * 3904 * 4150 4701 * 5392 3220 3288 2054 3356 5512 * * * 15 0 * * * * * 0 4655 0 1000 L 16 3037 * * 2075 * * * 5870 3167 2070 * 5730 * 2352 4067 * * * * * 16 121 4857 4437 3322 152 0 * 4745 1000 1000 E 17 * * 4523 750 * 5724 * * * * * 4442 * 2893 5226 3173 5337 * * * 17 48 4926 * 1585 585 * 0 4775 1000 1320 F 18 * * * 5230 1859 5493 2582 5411 4722 3129 4451 * * 5212 2988 5185 * 5197 5442 4153 18 33 * 5482 * * 0 * 4929 0 1320 N 19 3829 * 2857 2334 * 6392 * * 2937 * 6391 2395 5343 4783 3718 4729 4621 5506 * 6463 19 0 * * * * * 0 4930 0 1000 Q 20 4585 * 4770 2018 * * * * 3786 * * 3143 3292 1980 4058 4218 5662 * * * 20 31 * 5564 * * * 0 4877 0 1000 A 21 1254 * * 5833 * 5527 * 3499 5837 4799 5283 4948 * * 6251 3599 3225 2849 * * 21 0 * * * * 1026 974 4867 0 1682 M 22 * * * 4975 4391 * * 2524 6440 1828 3023 * * 5566 5394 * 6405 2279 * 3880 22 11 * 6989 * * 0 * 4936 0 1000 D 23 2954 * 3693 2158 * * 6993 6193 2658 5949 * 3355 * 2999 4558 3798 6212 5452 * * 23 0 * * * * * 0 4971 0 1000 D 24 3620 * 3134 2662 6278 5565 6266 5917 * * * 3810 * 3209 5925 4462 1679 * * 5078 24 0 * * * * 0 * 4971 0 1000 F 25 * * * * 3239 * * 4238 * 365 4311 * * * * * * 6140 * * 25 0 * * * * * * 4924 0 0 K 26 4383 5264 * 5066 * * 4551 5898 1483 * 5899 * * 2173 3204 4004 4585 6457 * 5907 26 0 * * * * * * 4924 0 0 T 27 3342 * 3873 1414 * 3233 * * 6581 6936 * 4153 * 3718 * 3118 3714 6740 * * 27 0 * * * * * * 4877 0 0 M 28 2941 * * * * * * 2970 * 5527 525 * * * * * * 5298 * * 28 0 * * * * * * 4750 0 0 F 29 * 5345 * * 36 * * * * * * * * * * * * * * * 29 0 * * * * * * 4755 0 0 P 30 * * * * * 4266 * * * * * * 225 * * 3439 * * * * 30 18 6351 * 0 * * * 4755 1000 0 N 31 5216 * 1876 5178 5528 4020 4120 5063 6793 * * 1963 * 4787 * 3047 3650 * * * 31 19 6255 * 0 * * * 4755 1000 0 M 32 6610 * * * 2883 * 6116 2230 * 1778 2689 * * * * 7174 4965 3607 6509 4386 32 0 * * * * * * 4755 0 0 D 33 * * 461 2619 * * * * 6184 * * 5080 5130 6116 * 5372 * * * * 33 0 * * * * * * 4755 0 0 Y 34 4730 6892 3965 2508 * 6765 5621 * 3131 5473 * 5473 2990 5816 2788 3428 4060 3796 * 6368 34 0 * * * * * * 4755 0 0 D 35 3836 * 2351 1564 6732 4589 6138 6129 3761 5854 * 5034 * 7055 * 2696 5487 6557 * * 35 0 * * * * * * 4755 0 0 I 36 6846 * * * * * 4947 1842 * 3264 * * * 5080 * 6876 4185 1220 * 4223 36 0 * * * * * * 4755 0 0 I 37 * * * * * * * 614 * 2325 * * * * * * * 2765 * * 37 0 * * * * * * 4755 0 0 E 38 4798 6423 3343 2064 * * 5487 6679 2031 6289 * 7010 * 3597 3077 4928 5289 * * 4109 38 0 * * * * * * 4755 0 0 C 39 2126 5024 1988 4889 * 5996 * 6351 * 4451 4484 * * 4883 * 3273 2975 6537 5723 4580 39 0 * * * * * * 4755 0 0 V 40 5528 5867 * * * * * 3473 * 4303 5212 * * * * * 4038 449 * * 40 0 * * * * * * 4755 0 0 L 41 5272 4464 * * 4216 * * 3509 * 665 * * * * * 6517 * 3383 * 4336 41 0 * * * * * * 4755 0 0 R 42 4391 * 5727 2556 4868 * * 2569 5363 5930 * 6537 * 3812 2017 3926 5315 3986 * 4760 42 0 * * * * * * 4755 0 0 A 43 1436 7176 3958 3101 * 4907 5080 4218 4580 6338 4343 6184 * 4319 * 2940 5145 * * * 43 0 * * * * * * 4755 0 0 N 44 6129 2470 * 5867 * * 4404 * 2663 5930 * 2190 * 4873 4400 2331 5727 4844 * 6207 44 0 * * * * * * 4755 0 0 S 45 * * 2995 3230 * 2570 * * 2778 6575 * 2368 * 3134 3205 5199 * * * * 45 0 * * * * * * 4755 0 0 G 46 4531 5569 6737 * 3845 626 6894 * * 5930 * 6334 * 5269 * 5676 * * 5147 3351 46 0 * * * * * * 4755 0 0 A 47 3604 * 2458 6033 * * 3325 6840 3062 7144 * 2036 * 5739 3206 3442 * 5494 * * 47 0 * * * * * * 4755 0 0 V 48 * * * * 4749 * * 2927 3307 2320 3379 * 6725 4179 * * 5581 1521 * * 48 0 * * * * * * 4755 0 0 D 49 6129 * 1560 1599 * 2737 * 5727 * * * 5039 * 4040 * 4988 * * * 5332 49 0 * * * * * * 4755 0 0 A 50 2042 6892 6289 4680 * 6800 5080 5940 3430 4315 * 3956 2854 4331 3766 3409 5408 4770 5727 * 50 0 * * * * * * 4755 0 0 T 51 1115 2795 * * * * * * * * * * * * * 3138 1968 5332 * * 51 0 * * * * * * 4755 0 0 I 52 4434 * * * 2895 * * 1400 * 4799 3995 * 5332 * * * 5940 1734 * * 52 0 * * * * * * 4755 0 0 D 53 5345 * 1182 2134 * 5899 5309 * * * * 2588 * 5332 * 4212 5667 * * * 53 32 * 5528 * * * * 4755 0 0 Q 54 1442 5686 5452 4753 * * * 5560 3762 * 6840 * 5330 3096 5165 3146 3908 3689 * 5488 54 0 * * * * 0 * 4719 0 1000 L 55 * 2812 * * * * * 5747 * 253 * * * * * * * * * * 55 0 * * * * * * 4755 0 0 L 56 * * * * * * * 5269 * 38 * * * * * * * * * * 56 0 * * * * * * 4755 0 0 Q 57 3117 * * 1884 3970 3542 * * 4629 * 5326 * 6053 2919 * 2901 3954 6752 * 4515 57 0 * * * * * * 4668 0 0 M 58 * * * * 5783 * 4955 5198 * 1347 918 * * * * * * * * * 58 0 * * * * * * 4607 0 0 N 59 3468 * 5870 * * 4242 * * 5622 * * 3431 * 5430 * 963 2626 5136 * * 59 104 4313 5715 1782 496 * * 4536 1267 0 L 60 1722 4809 3955 3858 * 4403 * 5055 * 5984 * * 4740 3566 3946 2552 4080 * * 5781 60 0 * * * * 0 * 4334 0 1000 E 61 * * 1589 1322 * 3491 * * * * * * * * 4786 * 3043 5575 * * 61 0 * * * * * * 4427 0 0 S 62 3482 * * * * 2062 * * 4214 * * 2348 4524 * * 1590 4470 * * * 62 0 * * * * * * 4375 0 0 G 63 4377 * 3991 * * 1183 * 3967 4869 * * 3574 3777 4871 * 2649 * * * * 63 0 * * * * * * 4180 0 0 P 64 * * * 2141 * 2577 * * 3836 * * * 1509 3397 * 3486 * * * * 64 0 * * * * * * 4084 0 0 S 65 * * 2788 3482 * * * * * * * 1773 * * * 1797 2431 * * * 65 0 * * * * * * 3982 0 0 S 66 * * * * * * * * * * * * * * * 0 * * * * 66 0 * * * * * * 2546 0 0 G 67 * * * * * 0 * * * * * * * * * * * * * * 67 0 * * 0 * * * 1000 0 0 //