HHsearch 1.5 NAME c2dbfA_ FAM FILE c2dbfA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2dbfA_.a3m DATE Fri Mar 12 11:46:03 2010 LENG 100 match states, 100 columns in multiple alignment FILT 110 out of 163 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.4369 0.6901 SEQ >ss_dssp CCCCCCCSCTTSCHHHHHHHHHHHTSCCTTSSHHHHHHHHTCGGGHHHHHHSSCHHHHHHHHHHHTCCCHHHHHHHHHHHTCSHHHHHHHHHHCSSSCCC >sa_dssp EEEEEECDAEEBDEEBBDDABEBAEDEDEECCCCCAAEDBDBDEDCECAEECECBBDCAADCBCEECBDBEDACDAAEEBDAEEABDBACDDDEEEEDEE >ss_pred CCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC >ss_conf 9766421156788999999999838888888599999984938999997338997999999961379999999999998293999999999502689899 >Consensus xxxxxkxxxxxLxxxxrxxLcxlLDxxxxxgdWrxLAxxLglxxxixxxxxxxSPtxxLLxxwxxxxxtvxxLxxxLxxmgRxDavxxLxxxxsxxpxsx >c2dbfA_ GSSGSSGDMKQLAEDVKLQLYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGTVRELVEALRQMGYTEAIEVIQAASSSGPSSG >UniRef50_UPI0000E49531(9-99:1011) PREDICTED: similar to GA19272-PA n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E49531 E=3e-13 s/c=0.84 id=23% cov=78% ----------------RQQLCDLLDDISGLKNWKHLAGLLGFTNddiaMFQRCMLRPggSPTDEMLTTWDYENHTIEELYLKLYEIKHARCMMFLKDFV- ------ >UniRef50_A7RGQ1(145-242:515) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RGQ1_NEMVE E=4e-06 s/c=0.54 id=20% cov=91% -------DVRNFSWKFQRQIAELLNPRkEPTGeDWRMVASNLGIKAAtIRTLESKENPTMELLNL--CHNTTTVDFFRAIDESGRFDVISDLLEKLSLEP PS- >UniRef50_C3YCJ6(2256-2358:2359) Putative uncharacterized protein n=4 Tax=Branchiostoma floridae RepID=C3YCJ6_BRAFL E=7e-17 s/c=0.86 id=24% cov=99% -TSEQKSVSGFLNHSTIQHLSILLDPPAPifGNNWRALADELGLCFQdICYIETKHNPTEKVLEMYATNTPTpsVQQVHKALMDIDRLDAAGLIDSVSDH KPPT- >UniRef50_Q49BZ6(14-114:219) Myeloid differentiation primary response protein n=1 Tax=Bos taurus RepID=Q49BZ6_BOVIN E=3e-13 s/c=0.75 id=22% cov=99% AASLSSLPLAALNVRVRRRLSLFLNVRAPvAADWTVLAEAMDFEYLeIQQLEKYADPTSRLLDDWQRRpGASVGRLLELLAKLGRDDVLMELGPSIEQKP E-- >UniRef50_UPI000176096F(481-587:603) PREDICTED: Unc5Da, partial n=4 Tax=Euteleostomi RepID=UPI000176096F E=3e-11 s/c=0.65 id=21% cov=90% ----------KIPQSIRQRICATFDTANAKGkDWQLLAQKLHIDRNLGYFARQTSPSAVILSLWEAQHqeqGDLDSLASALEEIGKVQskqstSADTLDR ISKTIPSS- >UniRef50_B0WY04(880-968:997) Nuclear factor NF-kappa-B p105 subunit n=7 Tax=Culicini RepID=B0WY04_CULQU E=5e-11 s/c=0.77 id=22% cov=83% ----------LFDEPCLTELCELLNQNNV---WKELGSLLDFNAFFSIWEMSPNPAEMLLSYFEMQKMKLDHLIDILQALEQKEAIHCIDEMITT----- >UniRef50_UPI000180D0E2(16-124:591) PREDICTED: similar to interleukin-1 receptor-associated kinase 4 n=1 Tax=Ciona intestinalis RepID=UPI000180D0E2 E=6e-11 s/c=0.63 id=17% cov=90% --------IRNLPYSVLKSIADDLDTAGTATNWRDFVLKIprgpndpepryqlqDIRKFEMIAGRGDSPTTAAIDAWSTSNATVQDLINVLTSLGLISMV NMLKSQVTMPP--- >UniRef50_Q9U3S0(505-593:597) Protein C04F12.3, confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=Q9U3S0_CAEEL E=3e-07 s/c=0.63 id=22% cov=77% -----------LDYLTRIRVAKIFDDQ---CKWQRLAQQLNCDHMVELISicssgDDSSPTMILLDQFEQlEDSSISRLRDAMNQMAEDDAVKLID---- ------ >UniRef50_Q7ZYE4(13-100:672) MGC53195 protein n=2 Tax=Xenopus RepID=Q7ZYE4_XENLA E=0.0007 s/c=0.51 id=23% cov=39% -----------------------------------------------------SVTGELMWSWGQKLPTLQELVDRLQKLELYRALGILQQ--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1550 * * * * 1585 * * * * * * * * * 1621 * * * * 1 0 * * * * * * 2162 0 0 S 2 753 * * * * * * * * * * * * * * 2273 2325 * * * 2 0 * * * * * * 2868 0 0 S 3 * * * * * * * * * * * 1954 * * * 431 * * * * 3 0 * * * * * * 3487 0 0 G 4 * * * 3367 * 496 * * * 3318 * * * * * 3416 * * * * 4 0 * * * * * * 4105 0 0 S 5 * * 3785 3952 * 3737 * * 3298 * * * 3836 3823 * 1053 3979 * * * 5 0 * * * * * * 4681 0 0 S 6 * * 4328 4418 * 3299 * * 762 * * * * 3100 * 3390 * * * * 6 0 * * * * * * 5082 0 0 G 7 3401 * 3292 * * 1464 * 4236 * 4356 * * * 3243 3034 4244 4098 * * * 7 0 * * * * * * 5082 0 0 D 8 * * 996 * 3807 * * * 4596 4368 * * 2884 * 4250 3246 * 4511 * * 8 0 * * * * * * 5339 0 0 M 9 * * * 4882 5235 4892 * 1783 * 2230 3403 * * * 4850 3518 * 2731 * 4839 9 0 * * * * * * 5836 0 0 K 10 3442 * * * 5050 2627 * 4153 2845 * * * * 2605 2624 3081 5008 5523 * 5448 10 0 * * * * * * 6068 0 0 Q 11 3778 5296 4746 4280 5467 * * * 3075 2569 * 4156 * 2414 3746 3448 4380 5352 5595 * 11 0 * * * * * * 6228 0 0 L 12 * * * * 3978 * * 3772 * 276 5224 * * * * * * 6571 * * 12 24 * 5935 * * * * 6458 0 0 A 13 4659 * 2666 5810 * * * * 4838 * * 3527 1635 4666 5051 1880 * * * * 13 37 * 5298 * * * 0 6469 0 1000 E 14 5218 * 6242 3250 4794 6042 4980 * 4891 5081 * 5692 2115 4061 5913 3501 4346 3775 5448 2751 14 17 6374 * 2322 322 1000 1000 6462 1000 1077 D 15 3678 * 2566 2753 * 5695 5076 6064 4852 3640 5894 6137 4828 * 4416 2176 4426 4475 * * 15 0 * * * * 0 * 6734 0 1000 V 16 5255 5058 * * 5809 * 6040 3204 3346 3782 * * 6276 5200 5971 6144 1896 1774 * * 16 0 * * * * * * 6694 0 0 K 17 4972 * * * 4359 * 5193 5176 3507 2935 5953 * * 3400 1189 6020 4825 5152 * 5848 17 0 * * * * * * 6715 0 0 L 18 6499 6151 5253 2442 7415 6303 4427 4797 3453 4383 5302 4380 * 2598 2506 3967 6396 5570 * 6258 18 0 * * * * * * 6727 0 0 Q 19 6273 * 4577 2037 * * 5230 5416 2222 4938 * 5308 5874 3152 2453 4180 6396 * * * 19 14 6676 * 0 * * * 6748 1000 0 L 20 * * * * 4652 * * 2593 * 573 5276 * * * * * * 3377 * * 20 0 * * * * * * 6751 0 0 Y 21 2771 1184 * 3774 * 4682 * 5365 * 6503 5923 5994 * 5340 6469 2828 5908 5144 * 6373 21 0 * * * * * * 6751 0 0 K 22 3671 6203 3911 3503 6269 4714 5610 4039 2763 3529 5017 4778 * 4086 3074 4045 4749 4501 * * 22 0 * * * * * * 6781 0 0 L 23 4974 5777 5881 5605 4788 6515 4149 3315 4421 1255 3695 * * 5384 6037 4822 5306 4901 6814 5423 23 0 * * * * * * 6781 0 0 L 24 * * * * 4889 * * 6289 * 147 4312 * * * * * * * * * 24 37 6653 6043 2585 263 * * 6777 1000 0 E 25 6448 * 523 4219 * * * * * * 6242 2688 * * 6444 4079 * * * * 25 168 5144 3617 1560 597 * 0 6743 1737 1000 I 26 4612 7743 4288 6512 * 5371 * 5324 * 5384 6140 * 1380 3398 6470 4081 3833 2528 6390 * 26 53 4786 * 1896 451 1834 475 6652 2136 3654 P 27 3785 6302 5955 3064 * 3609 4753 3978 3785 5534 * 4116 1609 4500 4863 6320 6320 6220 * * 27 138 3946 5264 599 1557 2403 302 6684 2764 3066 D 28 4459 4957 2183 4020 7423 4143 4092 7062 5941 6406 6000 2873 * 5158 3798 2806 4026 6053 * 6330 28 125 4771 4431 1670 544 872 1140 6665 2108 3351 P 29 3152 * 4207 3772 * 5482 * 6126 4461 6384 4730 4411 1581 4463 5577 4656 3852 3797 * * 29 147 4779 4051 524 1715 952 1050 6628 2222 3117 D 30 3180 6426 3682 4976 4405 2267 6571 * 4048 2377 4868 4729 * 5478 5045 4675 4106 6182 * 6123 30 162 3236 * 155 3298 1320 738 6563 3704 3919 K 31 4670 4410 4387 6814 * 1134 5318 * 2624 5257 * 3939 * 4831 5696 5535 5838 5093 * * 31 382 2176 6439 604 1547 1302 750 6596 4482 2980 N 32 * * 1383 6420 * 3366 * * 5352 * * 1551 5899 * 5743 4371 4894 6056 * 6720 32 182 3074 * 0 * 0 * 6777 3559 2569 W 33 * * * * 6058 * * * * * * * * * * * 5423 6036 141 4670 33 0 * * * * * * 6870 0 0 A 34 4546 4027 * 3985 6692 * * * 2505 4983 6239 * * 3492 1142 5484 4738 * * * 34 0 * * * * * * 6870 0 0 T 35 3996 * 4200 3047 7012 3322 3528 5370 5520 2959 3931 5732 * 4624 4498 3446 4093 4491 6381 5893 35 0 * * * * * * 6870 0 0 L 36 * * * * 3782 * * * * 320 4059 * * * * * * 3918 * * 36 0 * * * * * * 6870 0 0 A 37 255 * * * * 3581 * 5893 * * * * * * * 5789 * 4513 * * 37 17 6440 * 2585 263 * * 6870 1000 0 Q 38 4492 * 2958 2173 * 3051 5736 5823 4431 4754 6792 4851 * 3170 5859 3082 * 3963 * 6581 38 11 6997 * 0 * * * 6870 1000 0 K 39 3971 6584 * 2847 5789 6854 3490 * 2284 2805 7104 4808 * 4698 2822 4417 6850 5163 * 5932 39 41 5155 * 1964 427 * * 6870 1812 0 L 40 5762 4549 * * * * * 2847 * 609 3282 * * * * * * 4586 * * 40 80 4220 * 3228 163 * * 6870 2611 0 G 41 5472 6652 3635 5291 * 818 4130 * 4418 * 6381 4018 * 5598 4222 4986 6533 * * * 41 20 6160 * 2000 415 * * 6870 1000 0 L 42 * 5394 * 6399 2482 * * 3286 6558 1378 4781 6589 * * * 4814 6842 4294 * 2781 42 169 3179 * 1339 726 * * 6856 4035 0 G 43 * 5555 1959 3627 * 3140 6934 6399 4367 5940 6640 4601 3561 5844 3275 3176 3737 * * * 43 196 3077 6884 1958 429 * * 6857 4124 0 I 44 4032 4422 3866 3202 4460 6717 3713 4478 4541 6411 * 3796 * 5058 3376 3491 3312 5861 * 3661 44 196 2980 * 1318 740 * 0 6820 4267 1000 L 45 5099 5349 4853 3782 3437 * 4319 4283 4269 2424 3387 6525 * 3325 6753 4931 5096 5698 * 3182 45 263 2583 * 792 1243 * 0 6820 4450 1000 N 46 4578 * * 3223 5669 * * 1630 * 2667 4420 5587 * 4735 5132 * 3998 2694 * * 46 13 6830 * 4700 57 * 0 6820 1000 1000 N 47 3610 6385 3880 3563 6556 5260 5939 5425 4255 4604 4761 3865 4311 2499 3053 4388 4659 6550 6748 5426 47 16 6502 * 1000 1000 * 0 6820 1000 1000 A 48 3229 5459 * 5359 4427 5660 6647 4315 5602 3047 6836 3758 * 4320 5831 3561 3402 4054 4475 2802 48 17 6374 * 1000 1000 * 0 6820 1000 1000 F 49 4696 4376 5168 * 1961 * * 3116 * 1979 4586 5738 * 5702 * 6339 4676 4691 4753 4244 49 12 6948 * 1000 1000 0 * 6820 1000 1000 R 50 2847 * 4045 2487 * 3772 6054 6646 3576 4533 5102 4866 * 5132 2453 4009 5126 4988 * * 50 35 5394 * 2164 364 * * 6857 1395 0 L 51 4187 5092 3187 4309 * 4939 6853 6560 5012 3412 5009 4461 5050 3296 2593 3381 3203 * * * 51 41 5157 * 2928 203 * * 6857 1693 0 S 52 6235 4611 4297 2958 * 2589 5603 6814 2711 * 6600 6798 6703 3336 4395 2660 4113 5684 * 7154 52 13 6798 * 3000 193 * * 6857 1000 0 P 53 3587 * 4185 3775 * 3579 5687 6884 2731 6469 6839 5703 2205 6024 3496 3239 4659 6461 * 6706 53 113 3725 * 1826 478 * * 6857 3312 0 A 54 5348 5267 3520 * * 5184 5926 6891 * * 6724 3086 6640 * 5164 667 * * * 6068 54 27 5759 * 0 * * * 6801 1628 0 P 55 5429 * * * * 6858 * * 6707 * * * 141 * 5533 5571 * 6824 * * 55 0 * * * * * * 6801 0 0 S 56 2475 6027 * * 4938 * * 5974 * 4950 5839 * * 6233 * 3702 816 4375 * * 56 0 * * * * * * 6801 0 0 K 57 3465 5955 3940 2664 * 4523 5041 5318 3347 4393 3452 5057 * 4586 3436 3599 4671 7056 6713 5003 57 0 * * * * * * 6801 0 0 T 58 2371 4700 5587 2434 * 6169 5757 5078 3233 3913 5047 * * 5211 3458 4036 4057 4524 * 6068 58 0 * * * * * * 6801 0 0 L 59 6003 * * * 4806 * * 2911 * 710 3997 * * * * * 6639 2925 * * 59 12 6963 * 0 * * * 6801 1000 0 M 60 * * * * 5762 * * 3944 * 171 5133 * * * * * * * * * 60 0 * * * * * * 6801 0 0 D 61 4583 5812 2355 2987 * 5106 5023 4647 4273 4499 6103 3168 * 4378 3952 4160 4166 4875 5154 6529 61 49 4891 * 1000 1000 * * 6868 1757 0 N 62 5000 * 3376 3416 4613 * 4950 4143 5525 2477 4926 4501 6532 4901 5709 3409 3731 5103 7720 3267 62 47 6617 5521 1000 1000 * * 6868 1000 0 Y 63 4356 * 6527 * 4054 * * * * 3879 5084 * * 6232 * 5431 5531 * 757 2911 63 43 5083 * 527 1709 982 1018 6857 2128 1685 E 64 3026 * 5587 1546 6657 2308 6636 5535 4478 * * 5111 * 4591 5381 4133 5210 5911 * 5038 64 97 4164 6803 1353 716 0 * 6858 3189 1000 V 65 3190 5101 5678 3894 6886 5094 4587 6518 4776 3780 5040 5343 * 3363 4497 3113 2526 3864 * 5611 65 82 4179 * 734 1326 0 * 6859 2963 1000 S 66 5970 5583 * 4023 * 4804 4324 6848 2548 5882 5754 6387 3794 2478 2691 3075 3971 * * * 66 209 2993 6733 452 1894 * * 6867 4359 0 G 67 4993 * 2681 4449 * 2595 3560 * 4783 5446 * 1674 6952 5108 5812 3952 6384 6325 * * 67 111 3757 * 2033 404 * 0 6851 3226 1000 G 68 2810 4330 6325 * 6616 2271 3772 6564 3998 * 4741 6896 3443 6104 5149 2868 4038 5080 5409 * 68 243 2692 * 1245 790 0 * 6851 4295 1000 T 69 4169 * 3750 * * * * * 5332 * * 3305 4579 * * 2767 849 * * * 69 148 3360 * 1812 484 * * 6871 3804 0 V 70 6389 6485 * * * * * 2260 * 1900 * * * 6542 6457 * 4283 1228 * * 70 54 4763 * 1845 471 * * 6871 1870 0 R 71 6598 * 3459 3484 * 2285 6599 * 3589 4523 6961 4686 * 2211 3866 5023 4653 4420 * 5744 71 0 * * * * * * 6871 0 0 E 72 4137 * 2932 2319 * 6040 5188 * 4029 5606 5614 3760 * 3208 3890 4222 3537 3911 6485 * 72 0 * * * * * * 6871 0 0 L 73 * * * * 6257 * * 4617 * 167 5013 * * * * * * 5335 * * 73 0 * * * * * * 6871 0 0 V 74 3442 3537 * 6744 3425 6691 5555 3769 3994 2689 4727 * * 5176 3186 6365 5071 2857 * 4569 74 0 * * * * * * 6871 0 0 E 75 3928 6691 2411 2577 * 5112 6548 * 4223 5244 5825 3316 * 3292 3776 3468 5167 5124 * 6742 75 0 * * * * * * 6871 0 0 A 76 1942 4856 * 6086 4504 5519 5352 2795 4689 2778 5089 * * 5855 6798 5483 4746 3307 * 4180 76 0 * * * * * * 6871 0 0 L 77 * 5595 * * 3375 * * 4825 * 348 4712 * * * * * * 5402 * * 77 0 * * * * * * 6871 0 0 R 78 3830 * 4083 2818 * * 4338 * 2917 5007 5118 5425 * 3114 2634 4349 4473 5841 * 3722 78 0 * * * * * * 6844 0 0 Q 79 3142 * 2857 2236 * 5338 6738 5833 3533 4730 * 5906 * 3328 3335 3446 5843 4789 * * 79 0 * * * * * * 6844 0 0 M 80 6477 * * 6713 * 6643 5894 1916 * 2022 1339 * * * * 6248 * 5696 * 6208 80 0 * * * * * * 6844 0 0 G 81 6477 * 3472 2390 * 1195 4502 * 3319 * * 3701 * 5433 5219 * * * * * 81 0 * * * * * * 6844 0 0 Y 82 * * * 4456 * * 3377 * 5324 3221 6679 5369 * 5019 652 * * 6012 * 6729 82 0 * * * * * * 6841 0 0 T 83 3871 5555 4084 3481 4238 4336 4596 4869 4270 3363 5071 4079 3694 3982 4488 4964 3785 6530 6574 4842 83 0 * * * * * * 6842 0 0 E 84 5868 * 592 2932 * * * * * 6263 * 5230 5482 4966 3882 5230 * * * * 84 29 5628 * 1618 569 * * 6842 1706 0 A 85 1122 3590 * * * 4509 * 4173 * 4956 5943 * * * * 6471 * 1745 * * 85 0 * * * * * * 6757 0 0 I 86 2529 5417 * 7479 * * * 2879 5858 2534 3617 * * 4774 6422 * 6481 1595 * * 86 0 * * * * * * 6750 0 0 E 87 4250 6817 3262 2109 * 5023 5056 5739 4179 5411 5737 4683 * 3238 3357 3525 3926 5046 * * 87 15 6602 * 0 * * * 6740 1000 0 V 88 4138 5043 4296 4826 5020 * * 2523 * 1597 4155 6763 6539 * * 6769 5227 2479 * * 88 0 * * * * * * 6708 0 0 I 89 * 5050 * * 5407 * * 1835 * 868 4842 * * * * * * 3588 * * 89 53 * 4791 * * * * 6708 0 0 Q 90 * * 2565 2181 * 6264 * * 2348 4788 6068 6005 * 2514 4699 3886 4617 6331 * * 90 22 6057 * 1000 1000 * 0 6600 1000 2057 A 91 3166 * 3074 2445 * * 5634 * 4971 * * 3049 5942 2387 4098 3007 5442 * * * 91 23 * 5981 * * 580 1594 6451 0 2057 A 92 2560 * 5816 * 4179 4870 5319 3733 5411 5614 4040 4011 * 4362 * 2704 4979 3600 6490 2956 92 0 * * * * 966 1034 6474 0 1618 S 93 5675 * 5381 5788 5463 * * 3213 * 2562 4086 * * 3433 * 3053 5603 1602 * 5919 93 68 4442 * 2196 355 * 0 6392 1644 1000 S 94 3744 4312 3495 4408 4503 * * 6239 5219 * * 4257 3750 4074 * 1308 3940 * * * 94 0 * * * * * 0 6188 0 1000 S 95 4297 * * 2229 * 5511 5019 * 3821 4766 4533 4288 4371 3952 3877 2503 3015 * * * 95 0 * * * * * 0 6038 0 1000 G 96 3220 * 3173 2128 * 3086 4751 4490 3104 * * 4966 3925 * 3685 4703 5417 * * * 96 0 * * * * 0 * 5715 0 1000 P 97 * * 4205 * * * * * * * * * 358 * * 4544 3030 * * * 97 0 * * * * * * 5468 0 0 S 98 * * * 2126 * * * * 1925 3956 * * 2464 * * 2158 4724 * * * 98 0 * * * * * * 4991 0 0 S 99 3838 * * * * * * * * * * * * 4395 3962 700 2302 * * * 99 0 * * * * * * 4617 0 0 G 100 1908 * * * * 447 * * * * * * * * * * * * * * 100 0 * * 0 * * * 3030 0 0 //