HHsearch 1.5 NAME c2d7gD_ FAM FILE c2d7gD_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2d7gD_.a3m DATE Mon Mar 8 18:20:46 2010 LENG 100 match states, 100 columns in multiple alignment FILT 104 out of 368 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.4381 0.4439 SEQ >ss_dssp CCCCCCCCCCSCCCCCCBCCSSCCCCTTCEEEEEETTTEEEEEECCCCCSCCSSCTTSCCBCCEECCCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHC >sa_dssp EEEEEEEEDEEDEDEDCDCDEEDEBEDABDBCBCDEEEEEECCCCCEEEEECEDDEEECDDBDDCDEEDBEEECCEDBCDCBEEEEDDBDDCADECCEEE >ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCC >ss_conf 9479994588987632026888884897689998389627999999831788998321000798527589999999999999641899999999745579 >Consensus piaxVxvxxplxxxftYxvpxxlxxxvGxrVxVpfgxxxxxxGiVxxxxxxxxxxxxxlkxIxxvldpxlxxxxxxLxxwiaxyYxxxxxxxlxxxlPxx >c2d7gD_ PVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIGIVVSVSDASELPLNELKAVVEVLDPVFTHSVWRLLLWAADYYHHPIGDVLFHALPIL >UniRef50_A8SLK6(2-108:798) Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLK6_9FIRM E=2e-10 s/c=0.62 id=26% cov=98% -LAEVVVKSFLlsraENIFTYKIPKniEEEISVGKRVIVPFGKgNKGTVGLVINILDEKDVETDiKFKEINMVIDerEIVSKIQIKLAKFMSEKYITNLS YCLNCVLP-- >UniRef50_B1X5Q1(21-111:752) Primosomal protein N' (Replication factor Y) n=2 Tax=cellular organisms RepID=B1X5Q1_PAUCH E=0.0002 s/c=0.52 id=26% cov=89% ---------PEGKIFTYKNTDRIAIKVGDFVRVRL-KRASRIGLTIKSRTKipSELKFRHLESIESIFEiNFIDPNWYSWLYEISIYYHTDFFKILKTAF P-- >UniRef50_C6BTT2(6-101:780) Primosomal protein N' n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BTT2_DESAD E=2e-10 s/c=0.70 id=24% cov=94% ---QACLASPPYSIYTYEAPADLPkLMEGQRVLVPLGRS-VRVAFLIETVETPP-EGVELKSIIWPLerDPLLNSNHFKLYRNIGARQMQPLGKVLENVV P-- >UniRef50_C7NDX7(13-98:760) Primosomal protein N' n=4 Tax=Leptotrichia RepID=C7NDX7_LEPBD E=8e-10 s/c=0.75 id=19% cov=83% ------------GTYTYK--SEEKYEIGQWCIVNFINKDKM-GIIIAIVNENqiQFDISKVKKIKDAA-PVLsiPSDIMQLIRWIKNYYISDYYSVIKAV YP-- >UniRef50_C9RL78(14-109:672) Primosomal protein N' n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RL78_FIBSS E=5e-10 s/c=0.69 id=25% cov=96% -FCEVYIPLS-PSVFTYGVPEGADIQRGSVVWVQLARRKPTLALVSRVH--SEKPSFDVRYACpHESGYVFSERYMESLEWVSKYYISSPMRTLNVFWPA - >UniRef50_B9LA69(5-89:601) Primosomal protein N' n=2 Tax=Nautiliaceae RepID=B9LA69_NAUPA E=2e-06 s/c=0.62 id=22% cov=82% ---DIAV-INTPNTFTYS--SNFELNPGDVVEIE-VRNRKTTGYVVKEVQKPNFEC---KVILSKLYS-FSSKKQKIIDFICKYYFAPIGEA-------- >UniRef50_D1PM71(6-110:755) Primosomal protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM71_9FIRM E=2e-13 s/c=0.74 id=20% cov=97% --VQVAVDnatIHFDKLYSYRIPDALLGRvwPGSMVLVPFGRGDKpRMAVVLRVEElDAGAAPKRLKMLHDAAPEQtrLTPDLLELVHFLKDRTFCTWFE AVKAVIP-- >UniRef50_Q45032(12-108:660) Primosomal protein N' n=24 Tax=Borrelia RepID=PRIA_BORBU E=7e-07 s/c=0.57 id=23% cov=93% ---EIAINIPLNKLFFYKF--NLNLEIGIRVMVNFNGSNK-IGIIIKkyfenEFKEKFEFKIKEIIKIIDTTKIITEHNIDLAHWISKKTFSGFGETLFF GLP-- >UniRef50_Q7VFX4(6-92:637) Primosomal protein N' n=3 Tax=Helicobacter RepID=Q7VFX4_HELHP E=0.0007 s/c=0.52 id=18% cov=88% -IAPIGLKSP---PLVYECEEECAKESICSIVV---RGKSYLGVILQSLDKPSFECK----IAHKITNCFLPHQILLASFIAQYYCVGLGESYGLFVP-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 3982 0 0 V 2 * * * 5506 2547 * * 1621 * 2129 * * * * * * * 2448 4761 4929 2 0 * * * * * * 6249 0 0 A 3 711 5577 * * 6090 * * 5108 * 3903 * * * * * * * 2144 * 4991 3 0 * * * * * * 6388 0 0 H 4 5768 * 2689 1816 * * 4830 * 3315 * * 5304 4929 3118 2530 4046 * * * * 4 0 * * * * * * 6637 0 0 V 5 5113 6025 * * * * * 2216 * 5517 * * * * * * * 477 * * 5 19 6246 * 1585 585 * * 6684 1000 0 A 6 2015 4729 * * * 5640 * 2378 * 2095 * * * * * 4901 5134 2724 5242 5125 6 0 * * * * * * 6683 0 0 L 7 6499 * * * 4765 * * 2400 * 1496 * * 5175 * * * 6276 1444 * * 7 69 5747 5152 1585 585 * * 6712 1624 0 P 8 3644 * 1661 6241 6984 6473 * * 4912 3592 6155 3041 2010 * * 3805 * * * * 8 75 4300 * 1309 746 1017 983 6668 2616 1516 V 9 3481 * * * 6726 4026 4760 2446 6396 2700 6261 6474 * * 3856 3832 3956 2149 * * 9 177 3437 5421 1498 630 * 0 6689 3387 1000 P 10 3761 * * 6287 6278 * 3932 * 5557 * * 3949 757 4969 * 3745 5222 5388 * * 10 380 2343 4850 1425 672 558 1640 6732 4564 2238 L 11 6564 * * 5928 5628 5478 * 3536 6926 930 6249 6592 4236 * 6088 6399 4631 2916 5282 6729 11 96 4191 6670 1763 504 539 1682 6856 2811 2204 P 12 4550 * 1719 4762 * 4154 * * 6699 4483 * 2601 3173 * 3158 4391 * * 6492 4069 12 53 5889 5710 2099 384 908 1098 6965 1342 1638 R 13 5192 * 4704 3448 7088 3154 5562 6393 2180 6580 * 5213 * 2565 2501 4372 5384 * * 6168 13 17 6399 * 0 * 0 * 6950 1000 1637 T 14 3950 5633 * 4631 * 6740 * 3326 6539 2654 * 6433 2060 6815 * 3767 2820 3496 * 4960 14 11 7097 * 1000 1000 * * 7040 1000 0 F 15 * * * * 1016 * * * * 1809 5731 * * * * * * * * 2312 15 16 6505 * 0 * * * 7084 1000 0 D 16 * 6614 2199 * 4765 6755 4136 5722 * 6664 * * * 6803 * 3073 1129 5410 6256 5749 16 0 * * * * * * 7084 0 0 Y 17 * * * * 6133 * * * * 5158 * * * * * * * * * 62 17 34 * 5406 * * * * 7098 0 0 L 18 3815 6673 6700 4002 6491 4714 6749 6040 3047 2566 * 6454 * 4555 2357 2945 4162 4362 * * 18 187 5633 3302 3673 118 * 0 7080 1581 2154 L 19 3762 5074 5411 * 4571 * * 2024 * 3417 6171 5886 4634 * * 4930 * 1605 5467 4784 19 136 6193 3715 0 * 1343 723 6980 1000 4384 P 20 * 6636 3462 5875 * 5500 4298 * * * * 6499 597 * 5230 4530 4224 6180 * * 20 30 5611 * 1000 1000 383 2102 6959 1000 4697 E 21 3780 * 2781 1696 6461 5853 * * 3947 5315 * 5183 3605 * 5470 2470 5739 6531 * 6360 21 60 4613 * 812 1216 0 * 7033 2701 2339 G 22 3343 * 2295 2044 6324 3047 4044 * 6133 * * 3310 * 5937 4805 4101 5439 * 6320 * 22 66 5258 5735 1187 834 * * 7098 2080 0 M 23 4874 6016 5432 4100 3823 4287 5382 4620 4926 1221 3496 * * 4273 5626 6550 6453 5596 * 5860 23 215 2962 6650 965 1036 1000 1000 7085 4244 1675 T 24 3390 4362 3386 2584 * 5565 6491 * 3307 6734 5582 3337 3163 4621 4420 4710 4400 4715 * 6905 24 358 2253 6613 866 1148 1000 1000 7084 4936 1648 V 25 2659 * 4868 * 4860 5128 * 2598 6022 2244 * 6321 4061 * * 5132 6628 2320 5436 5766 25 0 * * * * 1000 1000 7080 0 1679 K 26 5173 5747 4651 1786 5610 4941 6207 4420 3041 5999 6447 5320 4629 3147 3361 5354 4637 5526 * * 26 95 4161 6944 1119 890 0 * 7091 3124 1000 A 27 3843 * * 5598 * * * 2704 6762 4103 * 6583 2226 * 4100 4518 * 1463 * * 27 45 5031 * 1243 792 0 * 7097 2165 1000 G 28 6608 * * * 5621 85 * 6041 * * * * * 6413 * * * * * * 28 0 * * * * * * 7098 0 0 C 29 4042 3562 2953 4713 6956 4981 5197 5288 4030 4585 3628 * 6608 4339 3996 2919 4798 3493 5658 6391 29 0 * * * * * * 7098 0 0 R 30 4101 * * 4827 5429 6413 * 3992 6609 2918 4885 6326 5349 * 960 6041 * 4434 6878 6488 30 15 6608 * 1000 1000 * * 7098 1000 0 V 31 5032 5288 * * * * * 4353 * 4239 * * * * * * * 248 * * 31 21 6109 * 0 * * * 7098 1000 0 R 32 4047 * 6981 4551 6414 * 6671 3219 3761 2196 4641 * * 5382 2891 4024 3957 3867 4082 5995 32 0 * * * * * * 7098 0 0 V 33 3615 7050 * * 6609 * * 3391 * 6109 * * * * * * * 339 * * 33 22 * 6041 * * * * 7098 0 0 P 34 6256 * 4899 5381 * * * * 5342 6313 * 4521 647 4181 3750 3999 7014 * * 6617 34 45 * 5019 * * * 0 7061 0 1000 F 35 * * * * 837 * * 5124 * 1616 * * * * * * * 3914 5715 * 35 344 5075 2454 0 * 391 2074 7020 1751 2492 G 36 3894 * * * * 594 4712 * 5321 5231 * 4239 * 5728 5596 4754 * 4302 * * 36 90 4825 5314 0 * 0 * 6869 2152 5232 K 37 4299 * * 6425 * 2506 6621 * 2317 * * 3428 5062 5997 1685 3637 6374 * * 6831 37 110 4547 5034 0 * 0 * 7081 2973 1712 Q 38 6755 * * 4986 * 2463 * * 4039 * * 2896 * 4602 1494 2731 5397 6354 * * 38 207 5802 3108 1484 638 0 * 7098 1666 2358 Q 39 6081 * 5593 4501 6758 * 6789 6105 2118 5019 4864 3990 * 2737 2069 4156 4174 5624 * 6800 39 124 6542 3803 3170 170 0 * 7046 1000 4497 E 40 3352 * 5369 3387 6797 6778 6763 3484 3911 2813 5119 6585 5294 6585 5052 4065 3790 2325 * 5646 40 341 5009 2477 0 * 0 * 7070 2151 3407 R 41 5413 4355 6268 6319 * * * 4026 4902 2211 5099 * * 5391 2371 4955 3898 3029 6466 3159 41 156 6081 3513 1585 585 0 * 6992 1000 4851 I 42 5471 * 4957 3465 * 3505 7007 2516 6511 3106 6578 5555 5546 5882 6121 4975 2824 2419 * 6335 42 60 5573 5685 0 * 0 * 7101 1576 3489 G 43 2472 * * * * 396 * * * * * * * * * * * * 4764 5430 43 0 * * * * * 0 7060 0 1000 I 44 * * * * 2487 * * 1846 * 2700 * * * * * * 5756 2133 5448 3056 44 0 * * * * * 0 7060 0 1000 V 45 4629 5768 * * 6588 6549 * 2011 * 4347 * * * * * 6318 6193 764 * 6994 45 50 4879 * 2076 391 0 * 7060 2307 1000 V 46 4467 * 5567 5642 6609 5715 6855 2300 * 2180 5210 5586 * * 5558 5368 4176 2390 3257 6947 46 16 * 6470 * * * * 7098 0 0 S 47 2642 6663 4249 3040 * 3330 * * 3498 * * 3521 * 4601 2931 2654 5541 5715 * 6799 47 78 5905 4796 2322 322 * 0 7082 1000 1000 V 48 6473 4670 * 3384 4851 6700 * 2698 3961 2344 6839 6766 5534 5339 4035 4582 4961 2440 * 6551 48 17 * 6378 * * 2138 372 7054 0 2806 S 49 3539 * 6205 4451 5883 3713 3953 5463 3600 3641 * 4358 6494 5777 4166 2472 3305 4117 * 4685 49 73 5324 5340 564 1628 320 2330 7054 1687 2982 D 50 5186 5720 2313 1949 * 3716 5981 6301 4757 5424 * 4725 3895 4287 4894 3566 4208 * * * 50 102 4335 5751 1616 570 621 1515 7045 3098 2213 A 51 3945 7527 3713 2609 5472 4135 5029 5854 2952 4836 * 5090 3932 3850 6015 4074 3122 4822 6857 * 51 76 4531 6912 1111 897 1557 599 7063 2766 2096 S 52 3958 5078 4466 3059 * 5708 * 5636 4493 5745 * 5472 2146 5351 5407 2304 3170 6470 * 5867 52 115 3705 * 1432 668 587 1581 7093 3664 2036 E 53 4372 * 2319 1835 5911 3452 * * 4707 4975 * 4265 3928 4791 5701 3599 5760 5729 * * 53 160 4660 3939 1686 537 0 * 7099 2724 1000 L 54 4383 * 4158 3709 2946 5858 4582 3417 4898 3226 6769 * 4223 4866 4553 5617 5539 2756 6059 4256 54 101 * 3893 * * 233 2743 7072 0 3436 P 55 3715 * 2551 2740 5849 6341 6390 6781 3137 * * 4299 1968 * 5498 5087 4787 6526 6674 5359 55 78 5831 4837 1045 957 642 1477 7083 1653 3580 L 56 3977 4371 4473 4025 5229 3295 4666 4668 3706 3688 6075 4362 3344 4972 5006 3342 5310 3806 * * 56 69 4724 6826 1080 925 227 2781 7098 2561 3287 N 57 3520 * 3608 4016 3478 3244 4734 4475 3407 4722 * 4213 5729 4665 4636 3963 5368 4037 * 4124 57 119 4640 4687 1679 540 962 1039 7088 2539 1501 E 58 5049 * 5492 3029 * 5713 5297 * 1733 6574 * 6257 3974 3212 3147 4723 3613 4897 * 5755 58 62 4567 * 2859 214 1732 517 7022 2677 2449 L 59 5662 * * 5875 4523 * * 2278 * 1026 5880 * * * * * 4922 2917 * 4637 59 0 * * * * 1535 610 7026 0 1967 K 60 4676 * * 4560 * * 6535 5884 840 5148 * 6300 * 5077 2241 6110 * 5194 * 6893 60 0 * * * * 953 1048 7037 0 1497 A 61 4021 5784 3647 2453 6498 7030 4984 5091 4585 6594 5595 5170 1957 6783 7008 3193 5050 6915 6809 4426 61 16 6542 * 1000 1000 0 * 7061 1000 1000 V 62 4568 * * * * * * 821 5914 3282 * * 6865 * * 6326 * 1993 * * 62 16 6488 * 0 * * * 7098 1000 0 V 63 4111 5040 4592 3377 6616 * 5632 2652 4028 2021 5374 5217 * 4908 4605 4310 4117 6186 6470 5769 63 18 6339 * 0 * * * 7098 1000 0 E 64 2836 * 3300 2942 6947 4094 4818 5914 3249 * 5767 5513 * 5969 2652 3045 5788 * 4890 5960 64 58 5049 6794 0 * * * 7098 2215 0 V 65 4060 * 5883 6325 5606 5282 * 2374 4019 3634 * * 4001 * 3991 6205 * 1472 * 5066 65 0 * * * * 0 * 7090 0 1000 L 66 4474 6636 6350 6794 4991 6616 6638 2617 4913 1421 6706 6265 6397 * * 3751 4746 2749 * 7018 66 157 3847 4889 742 1314 * * 7098 3523 0 D 67 6533 * 951 2507 * 4090 * * * 6457 * 6305 5088 5273 5082 4608 4017 * * 5285 67 897 1111 * 845 1173 388 2084 7083 6294 2627 P 68 4699 * 5766 3772 6373 6938 * 5827 3766 * * 4358 918 4505 * 3294 6848 * * 5265 68 211 2970 6919 799 1234 0 * 7094 4194 1000 V 69 4246 5439 * * 3691 4055 * 2804 * 2082 * 6634 3549 6740 6787 4681 * 2548 5051 4231 69 127 3573 * 758 1291 0 * 7089 3820 1000 F 70 6892 * * * 2128 * * 2565 * 1261 6684 * 4862 * * * * 3160 * 5606 70 45 5018 * 722 1344 * * 7098 2173 0 T 71 5443 6488 3099 6956 * 5418 6538 * * 6041 * 3293 2304 6640 5247 2261 2046 * * * 71 43 5105 * 1000 1000 * * 7098 2164 0 H 72 3952 6638 4573 2025 7179 4466 4937 7034 3955 * 6470 5325 2234 3460 5161 3602 5780 * * 6320 72 0 * * * * * * 7098 0 0 S 73 2949 6522 2973 1730 * * 3967 5693 3635 * 6324 4069 5453 4706 4950 4794 5306 5057 * 6640 73 0 * * * * * * 7098 0 0 V 74 7046 * 5865 4543 5746 7042 5176 4644 5985 1589 3578 5914 * 2769 * 5241 4624 4083 4598 3715 74 0 * * * * * * 7098 0 0 W 75 4014 6811 6855 * 4643 * 5542 1778 * 1927 3859 * * 5683 4242 6522 * 3690 4593 4900 75 0 * * * * * * 7098 0 0 R 76 3134 * 2718 2184 * 6616 5479 * 2640 4719 * 4156 4560 4359 3287 6213 6636 * 6671 * 76 0 * * * * * * 7098 0 0 L 77 4840 5352 * * 3147 * * 3855 * 664 4084 * * * * 6339 5275 6619 5623 * 77 0 * * * * * * 7098 0 0 L 78 1507 5381 * * 5782 4524 * 2343 * 3035 5912 * * * * 5240 5448 2913 5449 5525 78 0 * * * * * * 7098 0 0 L 79 5000 6634 3650 2783 5456 5486 4469 6915 2772 3652 6638 4899 6265 3050 2946 4281 7094 5632 * 5431 79 0 * * * * * * 7098 0 0 W 80 5458 * * 3965 2719 * 5269 * 4728 * * 6529 * 5167 4139 5069 * 6391 923 4907 80 0 * * * * * * 7098 0 0 A 81 3242 * * * * 6397 * 1862 * 2390 2222 * * * * 5017 5217 2792 * * 81 0 * * * * * * 7098 0 0 A 82 1109 6923 * * * 5711 * 6760 4235 * 6495 * * * 5147 1480 5820 5688 6424 * 82 0 * * * * * * 7090 0 0 D 83 4710 * 2046 3268 * 4774 5065 6195 3942 5217 6358 3829 * 3516 3582 3626 4179 5208 6520 5943 83 0 * * * * * * 7090 0 0 Y 84 * * 6764 4308 4302 * 4247 * 4553 * * 4627 * 6823 2970 5612 4638 * 5390 908 84 0 * * * * * * 7090 0 0 Y 85 6358 * * * 4396 * 6311 * * 4349 * 5068 * 5551 * * 3293 6667 5385 532 85 0 * * * * * * 7090 0 0 H 86 4476 3363 * * 2821 3795 3827 3035 5984 2348 3764 * * 4480 5199 5452 6775 4476 * 5870 86 0 * * * * * * 7086 0 0 H 87 2580 1873 * * * 3709 4900 5617 * 5712 * 6905 * 6514 5850 2722 3391 3434 * 4868 87 0 * * * * * * 7086 0 0 P 88 4759 * 4298 5422 6092 3765 5525 * 6074 * * 5164 1590 6499 4743 2159 3246 6775 * 5849 88 0 * * * * * * 7086 0 0 I 89 4443 * * 5659 5008 * * 3477 5015 1462 3895 6526 3032 6618 4525 6306 6427 4332 5274 3930 89 0 * * * * * * 7086 0 0 G 90 3349 * 4479 5654 4590 1178 * 3175 * 6526 6324 5704 * * 6371 3164 6578 5485 * 4502 90 0 * * * * * * 7086 0 0 D 91 4019 * 3426 1901 * 6603 * 6814 3453 3991 7031 3831 * 2704 4578 3699 4732 7011 * 6883 91 0 * * * * * * 7076 0 0 V 92 1873 4303 * * 6347 * * 3631 * 3464 4537 * * * * 4543 3587 1683 6379 * 92 0 * * * * * * 7076 0 0 L 93 3874 * * * 3405 * * 2177 * 1001 5434 * * * * * * 3850 * 5374 93 0 * * * * * * 7067 0 0 F 94 3672 6760 4548 4879 4409 4560 3985 5576 2926 5831 * 4680 6897 3670 1880 4027 4588 6332 * * 94 0 * * * * * * 7062 0 0 H 95 2637 4691 5730 * 5045 5757 7296 5927 * 2056 3757 5492 4503 6531 * 3421 2721 5164 6374 4899 95 0 * * * * * * 6904 0 0 A 96 1908 5576 * * 2601 5097 * 3453 * 4093 2796 * * * * * 5115 2353 * * 96 0 * * * * * * 6894 0 0 L 97 6130 * * * 3666 * 6090 2198 * 944 6337 * * * * * 4407 3777 5490 * 97 0 * * * * * * 6876 0 0 P 98 * * * * * * * * * * * * 24 * * 5935 * * * * 98 0 * * * * * * 6849 0 0 I 99 1663 * * * * * * 5663 4959 5603 * 5036 4629 * * 1881 2530 3375 * * 99 0 * * * * * * 5974 0 0 L 100 * * * * * * * 1785 * 672 3603 * * * * * * * * * 100 0 * * 0 * * * 3882 0 0 //