HHsearch 1.5 NAME c2ctdA_ FAM FILE c2ctdA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2ctdA_.a3m DATE Tue Mar 9 12:05:09 2010 LENG 96 match states, 96 columns in multiple alignment FILT 126 out of 10610 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.6 EVD 0.4679 -0.3539 SEQ >ss_dssp CCCCCCCCCCCCCCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCSCCC >sa_dssp EEEEEEEEEEEEEEECDEEDECCEBDEDBEEEDDBDADDDEEEDEEDBEDADECBEECEEEECDBEEEDDEDEDEEDBDEBDEDECEEEEEEEEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCC >ss_conf 988866764436899989752012332110238547038988997618977664664689987110230112485899988999805699998899 >Consensus gSsxxxgxxxxxpxxxpxxsxxxxxxxxxxxxxxxxCxxCxxxfxxxxxxxxhhxxhxxxxpfxCxxCxkxFxxxxxLxxHxxxxHxxxpxxxxxx >c2ctdA_ GSSGSSGRIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPSSG >UniRef50_B4JBB6(452-520:626) GH10955 n=3 Tax=Drosophila RepID=B4JBB6_DROGR E=2e-05 s/c=0.73 id=22% cov=39% --------------------------------------------------LQRHRALHMDTLFACKLCGQGFNRREQLQRHELEAH---------- >UniRef50_C3XX02(1459-1549:2406) Putative uncharacterized protein n=9 Tax=Branchiostoma floridae RepID=C3XX02_BRAFL E=4e-05 s/c=0.54 id=14% cov=68% ----SGGIESDHPPAQGRTEQTDRLAAKRTVDSRFACTECDYRAASDANLLIHARKHTGEQPYKCDQC---------------------------- >UniRef50_UPI0000E45C97(858-940:1521) PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E45C97 E=6e-07 s/c=0.67 id=15% cov=41% --SASRPHQKAKSPRSPRSPRAKAFQYKIDPERPFICHIC-------------------------------------------------------- >UniRef50_UPI000179275B(388-464:602) PREDICTED: similar to AGAP005245-PK n=1 Tax=Acyrthosiphon pisum RepID=UPI000179275B E=8e-05 s/c=0.63 id=20% cov=57% --------------------------------GGVECPRCGRHYKLKSSLRNHQKWECGKDPqFQCPFCNYRAKQKMHVARHIERMH---------- >UniRef50_B4KIB9(240-313:342) GI18201 n=2 Tax=Drosophila RepID=B4KIB9_DROMO E=0.0001 s/c=0.65 id=19% cov=66% -----------------------QQFLKTHVRRSHVCKYCTTAFVK-VKDLNAHIRAKHANSHQCVVCLNSFSTSSNLRAHLKRMH---------- >UniRef50_Q16YU8(270-369:388) RP58 protein, putative n=2 Tax=Aedes aegypti RepID=Q16YU8_AEDAE E=1e-10 s/c=0.68 id=20% cov=93% ----AKARKKYNGPKPPKPNLSEKEIYQSLLQ---TCDTCGKSVERNRiggatgivtsiaRLNRHKVTHTDQREFKCPHCPKEFYRSNNLKVHLRSHTKE KPFGCPS- >UniRef50_A8PJD4(46-137:346) Zinc finger, C2H2 type family protein n=1 Tax=Brugia malayi RepID=A8PJD4_BRUMA E=2e-05 s/c=0.55 id=19% cov=82% ----SDGRIKLLERLLPIETMMEVMELSKQKKSTRKKQRCNVCQKEVVNIKDHMMIHTGKKPYSCSICKKDFTQFGNMKIHM-------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 3200 * * * * 166 * * * * * * * * * * * * * * 1 0 * * * * * * 4434 0 0 S 2 3438 * * * * 4623 * * 4290 * * 3763 * * 4618 586 4815 * * * 2 0 * * * * * * 7214 0 0 S 3 * * 4031 2962 * 4912 * * * * 5300 3583 4639 3476 * 1393 2665 * * * 3 0 * * * * * * 7855 0 0 G 4 3032 * 3261 3498 * 1251 6029 * 4281 * * 5019 * * 4313 5186 4070 5062 * * 4 0 * * * * * * 7197 0 0 S 5 3239 * 5734 4599 * 5406 5490 5559 3069 * 5174 5643 4073 3631 3611 1804 3764 5784 * * 5 0 * * * * * * 7587 0 0 S 6 2622 5877 3199 * * 3483 * * 3925 * 4774 4296 3547 5654 3337 2131 4788 * * * 6 0 * * * * * * 7752 0 0 G 7 3012 * 4797 5945 4543 1049 5588 * 4657 * * 5156 4477 5433 5417 3088 * * * * 7 28 * 5709 * * * * 7864 0 0 R 8 4846 * 5843 3694 5844 4593 5113 4864 2264 * * 5836 5116 3671 1736 3430 5482 * * * 8 22 * 6049 * * * 0 8021 0 1000 I 9 4970 4843 * 4791 4883 5272 4152 3241 5001 2544 5307 7113 4330 3819 5398 4243 4117 2431 * * 9 22 * 6051 * * * 0 8060 0 1681 R 10 3531 * 5880 4817 5868 7093 * * 1795 5909 5488 3810 4215 3932 4053 3769 2931 4687 6030 * 10 20 * 6179 * * 1499 630 8096 0 2184 K 11 4058 * 3980 3019 5487 * * * 1502 5477 * * 4189 4292 4119 3403 4413 * * 4308 11 25 5845 * 1000 1000 1469 646 8153 1000 2131 E 12 4985 5036 3115 2805 * 5848 4095 * 2652 4156 * 4904 4237 3752 5623 2794 3983 * * * 12 0 * * * * 1000 1000 8262 0 1527 P 13 5963 * * 4438 6306 4636 * * 5798 3082 * * 1251 4655 5076 3231 2973 5611 * 7621 13 37 5294 * 2560 268 * 0 8351 1638 1000 P 14 4354 * 3378 4933 4967 7771 3159 6410 3943 6135 * 6124 1744 4292 3507 3384 4831 * * * 14 17 * 6420 * * * 0 8519 0 1000 V 15 3201 5419 4678 4522 5966 3189 6342 4845 3697 3798 5823 4939 6749 4693 4154 2452 5551 3251 * * 15 16 * 6502 * * * 0 8477 0 1619 Y 16 4496 * 4208 3843 3098 5297 3385 4973 6186 2837 6105 5796 3418 3572 6145 6151 4291 4894 5882 3871 16 0 * * * * 640 1482 8497 0 2233 A 17 3375 * 5960 4700 * 5245 5609 5340 5678 6607 5418 5733 1062 * 5397 2929 4342 5503 * * 17 0 * * * * * 0 8598 0 1000 A 18 3636 5655 5412 5507 * 5088 * 5875 4599 5361 * 4652 1712 4271 4698 2709 3585 4263 5762 * 18 16 * 6509 * * 0 * 8553 0 1000 G 19 3287 * 4461 4676 5450 1730 * 5676 4573 5436 * 4385 3777 3985 4696 3250 3906 * 6682 * 19 21 6126 * 1585 585 0 * 8620 1000 1782 S 20 3962 6903 5126 2761 6433 5147 6318 * 5282 4598 * 3218 4024 5650 4888 1766 3342 7342 * 6555 20 9 * 7349 * * * * 8727 0 0 L 21 4302 * 5924 4835 7005 4616 * 5066 4208 2605 4622 5313 3557 2361 4052 3500 3723 5007 * * 21 54 5998 5567 0 * 0 * 8733 1000 1000 E 22 4943 6161 3700 2169 6185 6465 4885 4258 2745 4986 4374 6549 4319 3903 6225 3661 4072 6261 * 5539 22 22 6786 7349 1000 1000 * 0 8708 1000 1614 E 23 4460 6609 3517 2350 7318 5013 6363 6323 3837 6409 4648 4050 5343 4015 3543 3007 3798 5587 * 5175 23 37 5291 * 593 1569 1494 633 8686 1682 2029 Q 24 4560 * 6070 5142 5772 * 3578 * 2182 6348 * 5016 4651 2313 3571 3504 3993 4502 * 5130 24 54 6055 5524 0 * * 0 8741 1000 1617 W 25 5004 5403 5438 4545 4421 5388 4421 4158 3818 3984 3716 4593 5462 3764 5813 4884 5029 4151 2432 4868 25 91 4373 6245 1601 577 * 0 8694 2644 2581 Y 26 5951 * 4772 2685 5371 5537 4861 5035 3024 5759 5659 5321 5494 2028 3839 3921 * 5996 6476 3950 26 26 6816 6772 2807 222 2268 336 8694 1000 2904 L 27 3989 6305 5639 3976 6794 4617 6924 3523 3299 2570 6581 4963 4027 5152 5485 4239 3607 3278 6547 5462 27 0 * * * * 2294 329 8723 0 3027 E 28 4518 6555 5814 2424 * 6325 4547 4918 3003 5376 * 5875 4215 2567 3509 3551 4922 4483 * 6169 28 30 6273 7095 1000 1000 967 1034 8736 1000 2690 I 29 6714 6504 4707 5007 4917 5254 3333 2718 3576 4251 7909 4417 3799 6049 4452 4144 4333 2754 * 5310 29 0 * * * * 1408 683 8766 0 1971 V 30 3439 * 3909 3258 5364 5455 4112 5655 3246 3053 6509 5683 5652 4892 3483 3804 3559 4405 6798 * 30 17 * 6407 * * * 0 8783 0 1575 D 31 2525 * 2851 3247 5209 7074 5353 6497 3840 4588 * 4760 3810 3860 5022 3854 4601 3788 * 6612 31 0 * * * * * 0 8809 0 2032 K 32 4825 * 3880 2987 * 4961 5422 * 1910 6611 5561 3850 4014 4500 3170 4785 4557 6494 * 4599 32 48 5787 6109 0 * 1420 675 8457 1788 2032 G 33 3953 6665 4671 5936 * 1828 5678 * 2697 * * 4930 5183 4303 2829 3912 4729 4736 6643 6465 33 29 7209 6271 2322 322 2076 391 8393 1000 2503 S 34 5528 6731 * 5114 4772 5876 4003 6918 2381 5018 5742 3881 3698 3826 2599 3665 3235 6829 * * 34 63 4540 * 2378 308 728 1336 8289 3452 2826 V 35 * 5092 * * 1915 * 4492 4136 5649 3381 * 5166 * 4353 4109 5707 5225 3130 * 2370 35 0 * * * * 0 * 8294 0 1678 S 36 4714 4381 5075 4384 5852 8859 7081 4426 2407 6265 6700 5062 4821 3252 4973 2485 3472 3919 * 6076 36 23 5996 * 2496 282 * * 8207 1714 0 C 37 * 92 * * * * * * 6274 * 6615 * * 6210 * * 5711 * * 7448 37 11 7022 * 1000 1000 * * 8223 1627 0 P 38 4937 * 3225 3742 6615 4998 5422 6247 3688 * 6526 6309 1765 3993 4613 3551 3387 6843 * 5711 38 8 7484 * 1000 1000 * * 8223 1000 0 T 39 6112 * 3919 3657 4340 6219 4461 3025 3725 4638 * 3147 * 3384 4100 4253 5230 3271 * 4518 39 26 5805 * 2119 378 * * 8223 1629 0 C 40 * 93 * * * * * * 6480 * * 5711 * 6345 * 5650 * * * * 40 0 * * * * * * 8223 0 0 Q 41 5289 4606 3136 4141 7968 1622 5783 * 4848 6152 * 3573 4510 3537 4539 3453 5749 * * * 41 12 * 6864 * * * * 7926 0 0 A 42 4295 4334 6468 3677 4791 5782 6437 * 1673 4360 4903 * 6564 5479 2898 4373 4479 4742 * 4300 42 44 5071 * 0 * * 0 7915 1771 1000 V 43 3514 4054 * 4886 6573 * 6832 4151 3971 6793 6177 5542 6391 5571 4131 2964 2417 2254 5657 * 43 88 * 4079 * * * 0 7915 0 1000 G 44 4934 5813 * 6518 879 4859 * 4793 5068 3583 * * * 6100 * 4978 3884 4349 * 4383 44 94 5002 4969 1715 524 0 * 7761 2384 3796 R 45 3749 * 6611 4203 3878 4741 * 6492 3485 4624 5161 4320 3566 5153 3395 2987 4300 4586 * 3178 45 53 * 4803 * * 446 1910 7862 0 2518 K 46 6707 5926 6806 5335 5991 6402 4837 * 2116 4989 6473 3717 5674 4420 3034 2800 2966 6927 5188 4929 46 51 6674 5329 0 * 0 * 7841 1000 3056 T 47 4214 * 4976 5614 7051 4927 4862 6402 2656 3797 * 5667 4046 4091 4271 2473 2953 4254 6677 6098 47 70 6577 4757 1585 585 607 1542 7858 1000 2157 I 48 3186 6046 * 4409 5012 3875 5213 4024 3822 4081 6232 7134 4028 4077 3675 2820 4991 3882 6651 4629 48 44 7111 5455 3585 126 0 * 7875 1000 3066 E 49 3468 * 3092 3428 * 4321 3519 * 4674 4902 4407 3224 * 5157 4747 2606 5165 5885 * 4033 49 76 6878 4551 1000 1000 0 * 7804 1000 1734 G 50 4187 6687 5555 7096 4553 3379 3693 4913 5038 1437 5072 3993 * 6067 * 3978 5893 5024 6229 5268 50 33 6217 6811 0 * 0 * 7754 1000 2935 L 51 4685 5680 5581 4867 5267 6537 * 5166 3995 1487 5207 5406 * 4455 3300 5087 4299 3749 6542 4670 51 15 * 6582 * * 0 * 7813 0 1000 K 52 4466 * 4324 3299 6475 * 5558 7287 2204 4294 6003 3914 7062 4668 1960 5289 4721 5895 * 5051 52 8 * 7437 * * * 0 7801 0 1000 K 53 4280 5763 6873 5547 6564 * 959 * 3850 6710 6184 5932 * 5373 3205 4578 5064 5624 * 4585 53 0 * * * * 0 * 7805 0 1580 H 54 7296 * * 4443 5061 * 1074 4117 5414 3326 3587 * 6578 5101 3836 5732 6581 5621 * 5678 54 11 * 7024 * * * * 7823 0 0 M 55 4813 6565 5599 4681 6776 * * 2884 3401 2685 2688 5533 * 4321 2536 5675 6251 5300 * 4571 55 53 4794 * 373 2134 * 0 7823 2641 1000 E 56 4098 6641 6690 4715 6390 5154 5442 3488 3177 4113 4629 6385 6970 3181 2509 4679 2975 5996 5386 6472 56 161 3399 6564 1218 811 * 0 7822 4456 1000 N 57 5002 * 6650 5197 6235 5243 919 5458 5561 4646 7255 6272 * 5405 4291 4194 3637 4595 * 6873 57 61 5456 5759 1291 758 889 1120 7806 2403 1599 C 58 4395 2840 4548 6872 5825 5545 2130 5506 6474 4282 6464 5889 * 5967 6240 3109 2254 6071 * 6460 58 7 7739 * 2322 322 * 0 7791 1000 2131 K 59 4813 * 4908 2863 6460 1634 4483 6703 3594 * 7468 5367 6649 3686 4345 3856 4340 5822 * 5638 59 45 5018 * 1993 417 618 1520 7791 2285 2131 Q 60 4774 * 3623 1792 6890 3931 6529 4887 3216 4197 * 4642 5343 4020 5079 3531 5819 4590 * 6503 60 59 4934 7089 2553 270 0 * 7815 2322 1000 E 61 6375 5783 5011 3609 6247 3298 6527 6117 1817 5142 6594 4343 * 4525 2188 4785 4872 * 6433 * 61 110 4426 5221 3424 141 0 * 7819 3034 1000 M 62 4409 * 5910 4376 6997 5881 * 6556 3918 4824 5937 5958 1081 5297 3619 3892 4569 5059 * * 62 95 4251 6501 1805 487 561 1634 7799 3355 2203 F 63 * 7074 * * 1123 * 3133 * 6684 6770 * * * 6385 6660 * * 5204 5618 1594 63 0 * * * * 0 * 7790 0 1659 T 64 4985 6563 * 3740 6763 5114 4916 6119 2091 5827 5202 5129 4099 2986 3775 2858 3740 5715 * * 64 0 * * * * * * 7822 0 0 C 65 * 0 * * * * * * * * * * * * * * * * * * 65 15 * 6583 * * * * 7822 0 0 H 66 5251 * 4548 3130 * 4676 4810 5130 3775 5045 5110 4470 2095 3869 4951 2997 4132 5727 * * 66 21 6095 * 1000 1000 0 * 7834 1588 1000 H 67 * * 4768 4189 3859 4794 3307 2420 5020 3060 5528 6997 * 4270 4981 6827 3832 4314 * 3028 67 70 4405 * 1000 1000 * * 7822 3117 0 C 68 * 34 * * * 6412 * * * * * * * * * 6413 * * * * 68 7 7760 * 2000 415 * * 7822 1000 0 G 69 6377 * 3531 3284 6162 1965 4511 * 3978 5660 5468 4116 3764 4021 4062 3686 6162 5687 * 6042 69 0 * * * * * * 7822 0 0 K 70 4651 6587 6967 5162 5187 6849 5600 * 980 6251 5054 6517 * 4540 3009 4902 * 5058 * 3936 70 0 * * * * * * 7808 0 0 Q 71 2674 5885 6178 3795 6685 4387 5960 5427 3694 5318 6629 5538 6707 3832 3182 2939 3203 3630 * * 71 0 * * * * * * 7805 0 0 L 72 5351 4212 6476 * 631 6616 * * * 4604 6576 * * * * 5388 6570 * 6499 2670 72 0 * * * * * * 7805 0 0 R 73 4584 6646 5218 7043 * 4909 6771 5786 2624 6476 * 3730 4581 4042 3515 2696 2704 3703 * 5064 73 0 * * * * * * 7805 0 0 S 74 * 6918 4740 * 7141 * 4922 5663 4182 4945 6988 3857 * 3085 2611 2738 2290 5873 6843 3870 74 0 * * * * * * 7797 0 0 L 75 4007 * * 3701 5478 6423 * * 1508 3956 5631 6822 5174 4195 3339 2697 5961 * 6520 5676 75 0 * * * * * * 7766 0 0 A 76 3213 7092 3305 4726 5885 3077 3596 7154 5207 7317 5644 4632 5201 5073 5337 2259 3831 5194 6851 5047 76 0 * * * * * * 7766 0 0 G 77 2912 * 4075 4297 6599 3279 3587 5838 5054 6426 6342 2084 * 4748 5646 3516 4325 6612 6761 4675 77 0 * * * * * * 7785 0 0 M 78 6971 6192 * * 4894 * * 6452 * 520 3733 * * 6730 5705 * 6421 3729 6936 4761 78 0 * * * * * * 7785 0 0 K 79 4217 6518 4578 4406 5859 5656 6802 6533 1628 3826 * 4088 * 3760 2958 4526 4914 4829 * 5492 79 0 * * * * * * 7785 0 0 Y 80 4141 * 5771 3645 * 6731 6655 4363 2929 5288 5356 5323 6923 3747 1824 4370 4099 4730 * 4031 80 0 * * * * * * 7785 0 0 H 81 * * * * * * 0 * * * * * * * * * * * * * 81 0 * * * * * * 7785 0 0 V 82 6102 * * 4340 6509 * 5876 2276 4189 1710 2568 6456 * 5375 6363 * 6571 3932 * 4358 82 0 * * * * * * 7713 0 0 M 83 4176 * * 4849 * 5845 * 5488 2379 2748 4698 3203 * 5187 2516 3681 4758 3944 * * 83 0 * * * * * * 7019 0 0 A 84 4752 5632 * 4769 5813 * 5850 5397 3596 5598 4053 5528 * 4676 2305 2287 3041 4133 4753 * 84 0 * * * * * * 6999 0 0 N 85 3744 5642 5623 4442 * * 1791 4858 2996 5680 3928 3670 * 4608 * * 5836 3036 * 4444 85 23 5975 * 0 * * * 6964 1000 0 H 86 * * * * * * 423 * * * * * * 5612 4522 3643 3184 * * * 86 0 * * * * * * 6964 0 0 N 87 4427 * * 3928 * 2080 5070 * 3641 5166 * 2044 3544 * 4115 2970 * * * * 87 0 * * * * * * 6882 0 0 S 88 4814 * 2860 1774 4829 3671 * * 4707 * * 2569 * * * 3362 3099 * * * 88 81 4195 * 0 * * * 6465 1000 0 L 89 4536 * * 2804 4466 * * 4466 2160 3536 3679 * * 4212 2609 4697 3665 * * * 89 0 * * * * * * 6049 0 0 P 90 * * * * * * * * * * * * 225 * 3461 4218 * * * * 90 0 * * * * * * 6049 0 0 S 91 1892 * 3550 * 3544 * 3709 * 3937 * * * 3643 * * 1987 3547 * * * 91 0 * * * * * * 4936 0 0 G 92 3287 2262 * * * 1033 3634 * * 3062 * * * * * * * * * * 92 0 * * * * * * 4484 0 0 P 93 * 3131 * 3250 * * * * * * 3156 * 839 * * 3193 * * * * 93 0 * * * * * * 4358 0 0 S 94 * * * 2630 * 2791 * * * * * 2795 2732 * * 1324 * * * * 94 0 * * * * * * 3871 0 0 S 95 2410 2546 * * * * * * * * 2732 * * * * 1029 * * * * 95 0 * * * * * * 3519 0 0 G 96 * * * * * 0 * * * * * * * * * * * * * * 96 0 * * 0 * * * 2150 0 0 //