HHsearch 1.5 NAME c2c1mB_ FAM FILE c2c1mB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2c1mB_.a3m DATE Wed Jan 9 18:53:55 2013 LENG 46 match states, 46 columns in multiple alignment FILT 26 out of 30 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.5412 4.4187 SEQ >ss_dssp CCCCCCSSCCCTTTSSCCCCCCCCCCCCCCCHHHHTTCCCCCCCCC >sa_dssp EEEEEEEDEEDEECEEEEEEEEEEEEEEECDEEDDEEEEEEEDEEE >ss_pred CCCCCCCCCCCCCCCCCHHCHHCCCCCCCCCHHHHHCCCHHHCCCC >ss_conf 9733233322000421000611058633489899830300210389 >Consensus MaKRxAxxxltxdNwdxeeexeexgtFxxAsxevlxxRxIkkarRr >c2c1mB_ MAKRVAEKELTDRNWDEEDEVEEMGTFSVASEEVMKNRAVKKAKRR >UniRef50_D1ZZX3(1-46:326) Putative uncharacterized protein GLEAN_07383 n=2 Tax=Tribolium castaneum RepID=D1ZZX3_TRICA E=8e-06 s/c=1.12 id=55% cov=102% MAKRTATSDLNHDNWDREDEPETAGTFTKASDEALKNRVIKVARRR >UniRef50_B7P989(1-47:364) Nuclear pore complex component NPAP60L/NUP50, putative n=1 Tax=Ixodes scapularis RepID=B7P989_IXOSC E=4e-08 s/c=1.26 id=43% cov=100% MAKRRADKEINHDNWdnDDEEEAEDPGKFKQADTDELKRRVIKVGRR- >UniRef50_UPI0000522F2F(1-46:454) PREDICTED: similar to nucleoporin 50kDa n=1 Tax=Ciona intestinalis RepID=UPI0000522F2F E=1e-11 s/c=1.54 id=55% cov=102% MSKRVADKYLTDQNWEEEEEPQEAGVFTPADADVLKGRVFKKARRR >UniRef50_Q5BZP1(8-51:200) SJCHGC05722 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5BZP1_SCHJA E=7e-11 s/c=1.56 id=36% cov=98% MAKRRADIELNRDNWDDDLVSTAKGDFDKADKDVLSQRKILTAR-- >UniRef50_A7SQ74(1-47:438) Predicted protein n=2 Tax=Eumetazoa RepID=A7SQ74_NEMVE E=2e-08 s/c=1.29 id=53% cov=102% MAKRVADRELNRDNWdEEDENAEEAGTFNTASAEDMSKRKIIKARRR >UniRef50_Q6BKV8(1-46:716) DEHA2F18810p n=2 Tax=Debaryomyces hansenii RepID=Q6BKV8_DEBHA E=0.0007 s/c=0.98 id=28% cov=102% MSKRGASDQITRENHLDHESDDEPKSIKSASASVLAKRKILKPRGR >UniRef50_UPI000179350B(1-45:509) PREDICTED: similar to LOC503675 protein n=1 Tax=Acyrthosiphon pisum RepID=UPI000179350B E=2e-11 s/c=1.56 id=57% cov=100% MSKRRAGNELTKDNWDEEEEKVDPGIFKVADESVLKNRVLKRAKR- >UniRef50_B6TRM8(12-57:475) RanBP1 domain containing protein n=1 Tax=Zea mays RepID=B6TRM8_MAIZE E=9e-07 s/c=1.19 id=42% cov=98% --KRVAGTQINKDNpePDDDEPEQEMGTFKKATEEVMATRIIVKVRRQ >UniRef50_A7TS18(1-49:699) Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TS18_VANPO E=3e-06 s/c=1.08 id=38% cov=102% MSKRNAGAQITREAFELEgnsDDDETPKSFSMASSEVMSRRKIAMPKRK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2848 0 0 A 2 643 * * * * * * * * * * * * * * 1476 * * * * 2 171 3159 * 0 * * * 2872 1239 0 K 3 * * * * * * * * 0 * * * * * * * * * * * 3 0 * * * * * * 3067 0 0 R 4 * * * * * * * * 4117 * * * * * 86 * * * * * 4 0 * * * * * * 3067 0 0 V 5 4689 * * * * 2317 * 4229 * * * 2768 5025 2978 2610 * 3830 2567 * * 5 0 * * * * * * 3067 0 0 A 6 0 * * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 3067 0 0 E 7 * * 1937 3649 * 2475 * * 4117 * * * * 4909 * 3141 1862 * * * 7 0 * * * * * * 3067 0 0 K 8 3971 * 3038 * * * * 3514 2111 * * 3001 * * 4890 2294 2911 * * * 8 0 * * * * * * 3067 0 0 E 9 * * 2912 1321 * * 4459 * * * * 3618 * 1937 * * * * * 3665 9 0 * * * * * * 3067 0 0 L 10 * * * * * * * 1752 * 631 * * * * * * * 4117 * * 10 0 * * * * * * 3067 0 0 T 11 * * 4459 * * * * * * * * 1162 * * * * 978 * * * 11 0 * * * * * * 3067 0 0 D 12 * * 2159 * * 4117 1961 * 2615 * * * * 3593 2214 * * * * * 12 0 * * * * * * 3067 0 0 R 13 * * 994 2209 * * * * * * * * * 3665 2302 * * * * * 13 0 * * * * * * 3067 0 0 N 14 3971 * * * * * * * * * * 95 * * * * * * * * 14 55 4749 * 1000 1000 * * 3067 1000 0 W 15 * * * * 3173 * 3744 * * * * * 3726 * * * * * 437 * 15 176 3118 * 393 2067 * * 3067 1767 0 D 16 4453 * 924 2221 * * * * * 3744 * 3637 * 4117 * * * * * * 16 0 * * * * * * 3067 0 0 E 17 * * 1911 1945 * * 5229 * * 3971 * * 4703 1955 3511 * * * * * 17 0 * * * * * * 3067 0 0 E 18 * * 1974 681 * * 3744 * * * * * * * 4408 * * * * * 18 187 3971 4117 1585 585 * * 3067 1000 0 D 19 * * 1452 881 * * * * * 3450 * * * * * * * * * * 19 0 * * * * * 0 3012 0 1000 E 20 4327 * 2771 923 * * * * 4956 * * 4815 4664 * 4440 3685 * 4461 * * 20 60 4618 * 1000 1000 0 * 3012 1000 1000 V 21 3398 * 2113 3310 * 5154 * * 4627 * * * 1484 * * 4524 3692 5253 * * 21 0 * * * * * * 3067 0 0 E 22 * * 3038 640 * * * * * * * * * 3201 * * 3514 4627 * * 22 0 * * * * * * 3067 0 0 E 23 4524 * 3014 594 * * * * * * * * * 4944 * * 2858 * * * 23 0 * * * * * * 3067 0 0 M 24 1736 * * 4117 * * * * 3514 * 3296 * 1734 * 2978 * * 5300 * * 24 0 * * * * * * 3067 0 0 G 25 * * * * * 366 * * 2853 * * * * 3541 * * * * * * 25 0 * * * * * * 3067 0 0 T 26 * * 3514 4689 * * * 4627 4805 * 5309 * * * 4909 2442 1075 3639 * * 26 0 * * * * * * 3067 0 0 F 27 * * * * 176 * * 3744 * * * * * * * * * * 4637 * 27 0 * * * * * * 3067 0 0 S 28 4909 * 3514 * * * * * 1151 * * 3758 * 4689 5229 2144 3983 * * * 28 70 * 4408 * * * * 3067 0 0 V 29 * * * * * * * 5089 1857 4090 3371 * 3715 3774 * 3585 2600 2820 * * 29 0 * * * * 0 * 3042 0 1000 A 30 0 * * * * * * * * * * * * * * * * * * * 30 0 * * * * * * 3067 0 0 S 31 * * 2043 * * * * * * * * * 3191 * * 1027 2671 * * * 31 0 * * * * * * 3067 0 0 E 32 2137 * 3492 1596 * * * * 3514 * * * 4459 3643 4637 3971 4805 * * * 32 0 * * * * * * 3067 0 0 E 33 * * 1733 893 * * * * * * * 4453 * * * 3119 * * * * 33 0 * * * * * * 3067 0 0 V 34 5054 * 4890 2082 * * * 4504 * * * * * * * * * 608 * * 34 0 * * * * * * 3067 0 0 M 35 * * * * * * * * * 611 1533 * * * * * * * * * 35 0 * * * * * * 3067 0 0 K 36 2341 * * 3118 * * * * 1380 * * 4944 * * 4459 2150 * * * * 36 0 * * * * * * 3067 0 0 N 37 4459 * * * * 4914 * * 1712 4944 * 2266 * 3514 3328 4689 2739 * * * 37 0 * * * * * * 3067 0 0 R 38 * * * * * * * * * * * * * * 0 * * * * * 38 0 * * * * * * 3067 0 0 A 39 3253 * * * * * * 3880 1705 * * * * * 3669 * 3276 1563 * * 39 0 * * * * * * 3067 0 0 V 40 * * * * 3665 * * 352 * 4627 * * * * * * * 3364 * * 40 0 * * * * * * 3067 0 0 K 41 3971 * * * * * * 3063 789 2625 * * * * * * * 3726 * * 41 0 * * * * * * 3067 0 0 K 42 * * * * * * * * 822 * 3971 * * 4408 3350 * 2647 3924 * * 42 0 * * * * * * 3067 0 0 A 43 508 * * * * 4805 * * * * * * 2430 * * * * 3726 * * 43 0 * * * * * * 3067 0 0 K 44 * * * * * * 4453 * 1383 * 4637 * * * 1043 * 4459 * * * 44 0 * * * * * * 3067 0 0 R 45 * * * * * 3615 * * * * * * * * 123 * * * * * 45 0 * * * * * * 2940 0 0 R 46 * * * * * * * * 2692 * * * * 3345 421 * * * * * 46 0 * * 0 * * * 2882 0 0 //