HHsearch 1.5 NAME c1yv0T_ FAM FILE c1yv0T_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1yv0T_.a3m DATE Wed Mar 10 23:40:58 2010 LENG 85 match states, 85 columns in multiple alignment FILT 21 out of 25 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4308 0.2591 SEQ >ss_dssp CTTSSSSHHHHHHHHHHHHHTTSSSSCCCCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC >sa_dssp EEEDEEEEDEEEEDDEEEEEEEEEEEEEEEDEEEEEEDDEDCDEDDDDDDDDDDCDEEEEDDEDEEEEEDDDCDEEEEEEEEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9823543118999999999998853376760239989999999999999998756665099999788899999999999984039 >Consensus lakxxxxxxkxqxxxexKxxxLaxRxxplxixglxxxxLxekakELhxxIxklexEKYDlexrxxrqxydixeLxeRxxqxxkxs >c1yv0T_ LAKADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKHS >UniRef50_P19351(158-242:397) Troponin T, skeletal muscle n=89 Tax=Arthropoda RepID=TNNT_DROME E=4e-09 s/c=0.74 id=42% cov=100% LSSAAMERNKTKEQLEEEKKIsLSFRIKPLAIEGFGEAKLREKAQELWELIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH- >UniRef50_O09344(144-224:325) Troponin T n=5 Tax=Mollusca RepID=O09344_PATYE E=1e-07 s/c=0.71 id=34% cov=96% -ASKDMAKSKEQLE-EEKRAILAQRIQPLSVDGLDLASLMEKATEFHNKIKNLANEKYELEERFKSQQYDMIELAERARQMNK-- >UniRef50_C3Y7I0(571-647:651) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y7I0_BRAFL E=5e-09 s/c=0.81 id=36% cov=86% ---------QKELREAEKRRVLAERRIKLELDGLDAEELSEKAAELHDHLSGVVTAKFDLDSKMQRQEYDINELSQRLREM---- >UniRef50_Q6AHQ1(1015-1098:1178) Troponin t protein 3, isoform b, partially confirmed by transcript evidence n=6 Tax=Caenorhabditis RepID=Q6AHQ1_CAEEL E=1e-19 s/c=1.16 id=28% cov=100% -AKQEMGMTKEQQEDAKRAFLAAIRKEIPNASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDMKELNERQRQVTRNS >UniRef50_Q27371(195-277:405) Troponin T n=8 Tax=Chromadorea RepID=TNNT_CAEEL E=7e-09 s/c=0.74 id=24% cov=98% -AKGGKDVMSKEQMEDAKRNFLAAVCRVQDVSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAAR-- >UniRef50_P27673(26-86:168) Troponin I, cardiac muscle (Fragment) n=9 Tax=Tetrapoda RepID=TNNI3_CHICK E=2e-08 s/c=0.99 id=23% cov=73% ----------------EKQRHLGGLCPPPELEGLGVAQLQELCRELHARI-AVDEERYDMGTRVSKNMAEMEELRRRV------- >UniRef50_Q502G8(35-103:182) Zgc:112242 n=18 Tax=Euteleostomi RepID=Q502G8_DANRE E=2e-08 s/c=0.87 id=27% cov=82% ---------EKEQKRLDREQTLSEKGPPLKLSGLSVQDLQNLCKELHQKIDVVDEERYDVQSKVTKNEKEIVDLNHKI------- >UniRef50_Q8WPC1(104-180:260) Adult cardiac troponin I n=5 Tax=Ascidiacea RepID=Q8WPC1_HALRO E=8e-07 s/c=0.71 id=27% cov=92% -AREDLKREAEVKAEEKKKILNSRIEPLSNLGGMSEQDLKDLCRELHAKIEKVDEQRYDIEVKVNKNDQEIEDLNQRI------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 0 * * * * * * * * * * 1 0 * * * * * * 1970 0 0 A 2 326 * * * * * * * * * * * * * * 3097 * 3551 * * 2 0 * * * * * * 3067 0 0 K 3 * * * * * * * * 1067 * * * * 4124 1994 2222 * * * * 3 0 * * * * * * 3067 0 0 A 4 1186 * * 2867 * 3289 * * 3358 * * * * 2589 * * 4124 * * * 4 0 * * * * * * 3067 0 0 D 5 3097 * 1482 1242 * 3289 * * * * * * * * * * * * * * 5 0 * * * * * * 3067 0 0 Q 6 * * * * * * * * 2209 2867 1394 * * 2261 4124 * * * * * 6 175 3133 * 0 * * * 3067 1139 0 K 7 3358 * 3289 3097 * 2589 * * 952 * * * * * * * * * * * 7 0 * * * * * * 3067 0 0 R 8 * * * * * * * * 3358 * 2589 * 3133 * 1112 4124 * 3289 * * 8 0 * * * * * * 3067 0 0 G 9 * * * 2867 * 1910 * * * * 3289 2115 * * * 3358 2589 * * * 9 0 * * * * * * 3067 0 0 K 10 3363 * * 3232 * * * * 652 * * * * 3684 * 3609 * * * * 10 63 4543 * 0 * * * 3322 1000 0 K 11 * * * 1638 * * * * 1265 * * * * * 2266 * 4192 * * * 11 0 * * * * * * 3322 0 0 Q 12 * * * 1694 * * * * 4192 * * * * 892 * * * 3363 * * 12 0 * * * * * * 3322 0 0 T 13 * * * 4192 * * * * 3363 2662 * * * 1414 * * 1667 * * * 13 0 * * * * * * 3322 0 0 A 14 2292 * * 1465 * 3842 * * 3232 4543 3609 * * 4192 3684 * * * * * 14 121 * 3641 * * * * 3322 0 0 R 15 * * 3752 1292 * * * * * 4067 * * * * 1127 * * * * * 15 0 * * * * 0 * 3224 0 1000 E 16 2173 * 3609 762 * * * * * 3232 * * * * * * * * * * 16 0 * * * * * * 3322 0 0 T 17 3988 * 3868 1333 * * * * 1655 * 3265 * * * * * 4324 * * * 17 0 * * * * * * 3538 0 0 K 18 * * * 4897 * * * * 360 * * * * * 3045 3919 * * * * 18 0 * * * * * * 3562 0 0 K 19 3069 * * 3904 * 4103 * * 1560 * * * * 4197 2059 * * 3031 * * 19 0 * * * * * * 3562 0 0 K 20 2427 * * * 4201 * * 3370 2045 * * 4105 * 3904 1758 * * * * * 20 0 * * * * * * 3562 0 0 V 21 4103 * * * 3025 * 4197 1606 * 2634 3919 * * * * 4960 3904 3186 * * 21 49 4897 * 0 * * * 3562 1000 0 L 22 3053 * * * * * * * * 295 * 3952 * * * * * * * * 22 0 * * * * * * 3562 0 0 A 23 1069 * * 4311 * 2528 * * * * * * * * * 1738 * * * * 23 0 * * * * * * 3584 0 0 E 24 4264 * 4688 1298 3989 4230 * 2703 * * * * * 3105 3996 * 4217 * * * 24 0 * * * * * * 3584 0 0 R 25 * * * * * * * 3996 3933 4230 * * * 4460 472 * * 4264 * * 25 0 * * * * * * 3584 0 0 R 26 * 2172 * 3996 * 3933 * 2480 2047 * * * * * 2129 * * * * * 26 0 * * * * * * 3584 0 0 K 27 * * * 4300 * * * 4052 1644 * * * 2463 2556 3359 4124 * 3994 * * 27 0 * * * * * * 3584 0 0 P 28 * * * * * 4460 * 3209 4052 3996 * 4630 742 * * * * 3550 * * 28 0 * * * * * * 3584 0 0 L 29 3282 * * * * * * 4630 * 798 * * 2584 4264 * 3996 * * * * 29 0 * * * * * * 3584 0 0 N 30 3376 * 3123 2075 * * * * 3933 * * 1396 * * * 3235 * * * * 30 0 * * * * * * 3584 0 0 I 31 3209 * * * * * * 1780 * 1759 * * * * * * * 1712 * * 31 0 * * * * * * 3584 0 0 D 32 3333 * 1384 3105 * 3996 * * * * * * * * * 1562 * * * * 32 0 * * * * * * 3584 0 0 H 33 * * 4460 4300 * 762 2033 * * * * * * * * * 4124 * * 6308 33 0 * * * * * * 3584 0 0 L 34 * * * * 3141 * * 4124 * 684 2678 * * * * * * 4300 * * 34 0 * * * * * * 3584 0 0 N 35 * * 2987 * * 1597 * * * 2691 * 2563 4300 * * 2569 * * * * 35 0 * * * * * * 3584 0 0 E 36 3176 * * 1721 4217 * * 4688 * 3924 * * 2357 4300 * * 3994 3074 * * 36 0 * * * * * * 3584 0 0 D 37 2084 * 1966 3778 * * * * * * * 2369 3994 2964 * 4300 * * * * 37 0 * * * * * * 3584 0 0 K 38 * * 1821 2135 * * * * 2373 * * * * 2117 * 3924 * * * * 38 0 * * * * * * 3584 0 0 L 39 * * * * * * * 4460 * 157 4124 * * * * * * * * * 39 62 4568 * 4524 64 * * 3584 1000 0 R 40 * * * * * * * * 1650 * 3924 * * 2088 1644 4052 * * * * 40 0 * * * * * * 3584 0 0 D 41 3185 * 1975 946 * * * * * * * 3102 * * * * * * * * 41 0 * * * * * * 3585 0 0 K 42 * * * * * * * * 626 1737 * * * * 4261 * * * * * 42 0 * * * * * * 3585 0 0 A 43 1023 1737 * * * * * 2265 * * * * * * * * * * * * 43 0 * * * * * * 3585 0 0 K 44 4015 * * * * * * * 1195 * * * * 2748 1804 * 3919 * * * 44 0 * * * * * * 3585 0 0 E 45 * * * 350 * 4261 * * * * * * * 3318 * * 3987 * * * 45 0 * * * * * * 3585 0 0 L 46 * * * * 3919 * * * * 99 * * * * * * * * * * 46 0 * * * * * * 3585 0 0 W 47 * * * * * * 542 * * * * * * * * 4502 * * 1893 * 47 0 * * * * * * 3585 0 0 D 48 2163 * 1815 3214 * * * * * * * 3919 * 2255 * 3197 * * * * 48 0 * * * * * * 3585 0 0 W 49 * * * * * * 4015 * 2359 2686 * * * * 1399 4884 4511 * 3453 4659 49 0 * * * * * * 3585 0 0 L 50 * * * * * * * 623 * 2100 * * * * * * * 3091 * * 50 80 * 4217 * * * * 3585 0 0 Y 51 * 2578 2301 3836 * * 3462 * 3870 * * * * * * 3957 * 2569 * 2577 51 0 * * * * 0 * 3519 0 1000 Q 52 4217 * * * * 4015 * * 1144 * * 3322 * 2887 4301 4617 4659 3928 * * 52 0 * * * * * * 3585 0 0 L 53 * * * * * * * * * 648 * * * * * * * 1467 * * 53 0 * * * * * * 3585 0 0 Q 54 3919 * 1737 930 * * * * * * * * * 4406 * * * 4015 * * 54 0 * * * * * * 3585 0 0 T 55 2790 * * 1395 * 3370 * 4511 * * * 3919 * * * 4502 2156 * * * 55 0 * * * * * * 3585 0 0 E 56 4015 * 3402 470 * * * * * * * * * 3039 * * * * * * 56 0 * * * * * * 3585 0 0 K 57 * * * * * * * 4301 623 * * * * * 1737 * * * * * 57 0 * * * * * * 3585 0 0 Y 58 * * * * 2444 * * 3638 * * * * * * * * * * * 442 58 0 * * * * * * 3585 0 0 D 59 * * 168 3185 * * * * * * * * * * * * * * * * 59 0 * * * * * * 3585 0 0 F 60 4659 * * * 3458 * * 3090 * 757 4217 * * * * * * 3928 * 4617 60 0 * * * * * * 3585 0 0 A 61 4406 * 4015 740 * 3357 * * * * 4502 * * 3328 * 4301 * * * * 61 0 * * * * * * 3585 0 0 E 62 2631 * * 1972 * * * * 2265 * * * * 4301 * 2971 3421 3266 * * 62 0 * * * * * * 3585 0 0 Q 63 * * * * * * * * 1218 * * * * 4406 935 * * * * * 63 0 * * * * * * 3585 0 0 I 64 * * * * 2730 * 2681 2971 * 3506 4015 * * 3967 4261 * * 1737 * * 64 0 * * * * * * 3585 0 0 K 65 * * 3638 2265 * * * * 1741 * * 3985 * 4015 * 3098 2550 * * * 65 0 * * * * * * 3585 0 0 R 66 * * * * * * * * 1737 * * * * 3680 847 3919 * * * * 66 0 * * * * * * 3585 0 0 K 67 * * * * * * * * 4406 * * 1737 * 615 * * * * * * 67 0 * * * * * * 3585 0 0 K 68 * * 2480 1819 * * * 4203 2003 * 4217 * * 3919 * 4301 * 3987 * * 68 0 * * * * * * 3585 0 0 Y 69 4217 * * * * * * * 3928 * * * * 3985 * * 3091 * * 514 69 0 * * * * * * 3585 0 0 E 70 * * 799 1234 * * * * * * * * * * * * * * * * 70 0 * * * * * * 3585 0 0 I 71 * * * * * * * 1272 * 2007 1867 * * * * * * 3987 * * 71 0 * * * * * * 3585 0 0 V 72 4203 * * 3096 * * * 3919 1878 * * 2183 * 4301 3987 * 4511 3147 * * 72 0 * * * * * * 3585 0 0 T 73 * * 2449 987 * * * * * * * * * 3638 3987 * 3458 3680 * * 73 0 * * * * * * 3585 0 0 L 74 * * * * * * * * * 94 3987 * * * * * * * * * 74 0 * * * * * * 3585 0 0 R 75 3097 * * * * * 3349 * 3967 * * 2066 * * 1635 4015 4203 * * 4502 75 0 * * * * * * 3585 0 0 N 76 * * * 1276 * * 3865 * * * * 2962 * 1818 4026 4475 * * * * 76 0 * * * * * * 3511 0 0 R 77 * * * * * * * * 2890 * * * * * 209 * * * * * 77 0 * * * * * * 3511 0 0 I 78 3033 * * 4313 * * * 1411 * 3939 * * * 2481 * 4026 * 2778 * * 78 0 * * * * * * 3511 0 0 D 79 * * 2991 * * * * * 3437 * * 2559 * * 876 3889 * * * * 79 0 * * * * * * 2931 0 0 Q 80 * * 4253 2260 * * 3889 * * * * * * 575 * * * * * * 80 0 * * * * * * 2931 0 0 A 81 1444 * * * * * * 3582 * * 2227 3781 * 2806 * * * 3062 * * 81 0 * * * * * * 2797 0 0 Q 82 2797 * * * * * * * * 2636 * 2316 * 1476 * * 2889 * * * 82 0 * * * * * * 2699 0 0 K 83 * * * * * * * * 836 * * * * * 1185 * * * * * 83 0 * * * * * * 2699 0 0 H 84 * * * * * * 781 * * * * 2020 * * * * * 2545 * * 84 0 * * * * * * 2158 0 0 S 85 * * * * * * * * * * * * * * * 0 * * * * 85 0 * * 0 * * * 1906 0 0 //