HHsearch 1.5 NAME c1yj5C_ FAM FILE c1yj5C_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1yj5C_.a3m DATE Wed Mar 10 15:39:29 2010 LENG 105 match states, 105 columns in multiple alignment FILT 125 out of 576 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.4158 -0.6409 SEQ >ss_dssp CCEEEEEECCTTSCCCEECCTTTCEEEECSBTTTTBCCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCTTCEEEECTTCEEESSSSCSEEEEE EEECC >sa_dssp ECCCBCADCDEEDCEDBDBCEEDEDCDABDDEEBEBEBEEACEEAACADBDCDDDCADADADBEDCABBCEEEBCEECECEADDDCCADAADDEDDBCAD CDDEE >ss_pred CCCEEEEEECCCCCCEEEECCCCCEEEECCCCCCCCCCHHHHHEEEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCEEEECCCCEEEEECCEEEEEEE EEECC >ss_conf 9744899817998860687367756897165666764300424014999942883899820688741770043038848993159899994535899999 88559 >Consensus xxxrlxLxxxxgxxxxxxlpxxxxxxxiGRxxxxxixdxxvSrxHxxixxxxxxxxxxxxxxsxNgtxvNgxxlxxxxxxxLxxGDxixlxxxxxxxxix fexxx >c1yj5C_ SRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVHELKPGLSGSLSLGDVLYLVNGLYPLTLR WEELS >UniRef50_A8ZZ22(11-112:387) Diguanylate phosphodiesterase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZ22_DESOH E=4e-05 s/c=0.48 id=23% cov=46% -RGQWYLEAAADANREWMVAIEAVPFVIGREKDcnLTLTDSLVSRHHCEI-------------------------------------------------- ------- >UniRef50_UPI000186CBAD(42-146:473) cAMP-dependent protein kinase catalytic subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CBAD E=1e-06 s/c=0.52 id=20% cov=81% --GRLYPTKPD----ILSLELTNNEYTVGRGPHCDLSignnckekvHGAFSKVHFKIrkinisKTNQDDFIVYLDDLSSNGTYINGKKVGKGKSAILENN NEISL--------------- >UniRef50_B8ETF8(11-108:541) FHA domain containing protein n=1 Tax=Methylocella silvestris BL2 RepID=B8ETF8_METSB E=2e-06 s/c=0.55 id=21% cov=90% -------QSLPNGAPVSVRLTDGRGVDIGRSAnaewSLPDPTRFISGRHCEVR--FRDGAYWLNDLSTNGTFLNDSTRRIQAPHRLRHGDRLAI--GSYI IAVSLDQAS >UniRef50_Q803C1(18-125:485) E3 ubiquitin-protein ligase RNF8 n=6 Tax=Clupeocephala RepID=RNF8_DANRE E=4e-05 s/c=0.46 id=20% cov=86% AKEKIWCLQRVGRDSDWLRLFEDSEVSVGRGLNVthQILSSSCplmiSRIHCVFKLN-EGRQWTVTDNkSLNGVWVNGKRIPPSTPCILHQSDSVRL--- ------------ >UniRef50_A9UTZ0(4-92:92) Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9UTZ0_MONBE E=0.0004 s/c=0.51 id=19% cov=75% ----------DGKRDGKSFPLQARQCLFGRDEKCdiRIQRPECSMHHCRLMVDDNNKVMVQLepQSDTNPTLLNDQAIA--SMTTLADGDVFSI------ --------- >UniRef50_B0WL40(4-114:368) Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0WL40_CULQU E=1e-06 s/c=0.49 id=22% cov=97% ----LYLFDCDRQVDIAVPNQPGSIVTIGRDSILQCNDARISRTHGTLkldaVESGGGHSVQITSTHSNPIFIRTgvdgvlNILAKDLTATLQKGDKFAL LPDQYWYEIRFGEVA >UniRef50_A3CWE6(165-245:265) FHA domain containing protein n=2 Tax=Methanomicrobiales RepID=A3CWE6_METMJ E=0.0001 s/c=0.59 id=21% cov=76% -----------GRADPGVPGRAAQAIVLGEEYAAVT---RVSKPHARLTHRRDGAWFIEDCGSTGGTFVNGTPLEAGTRRELHDGDLIELAKG------- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1778 * * * * * * * * * * * * * * 1044 2162 * * * 1 0 * * * * * * 2679 0 0 R 2 * * * * * * * * 1173 * * * * 2789 1280 * * * * * 2 0 * * * * * * 4080 0 0 G 3 3313 * * 3111 * 557 * * * * * * * * 3268 * * * * * 3 0 * * * * * * 3936 0 0 R 4 * 4320 * * * 3991 * * 2460 * * * * 3404 711 * * * * * 4 0 * * * * * * 4944 0 0 L 5 4667 3388 * * * * 4526 3538 * 757 4467 * 4405 * * * * 4277 * * 5 0 * * * * * * 5385 0 0 W 6 4626 * * * 4618 6557 * 4909 * 3484 * * * * 4966 3484 3778 3176 2487 1726 6 0 * * * * * * 6292 0 0 L 7 * 4977 * 7034 * * * 3619 5209 507 * * 4813 * 4379 * * 4918 * 4980 7 0 * * * * * * 6578 0 0 Q 8 * * * 3197 4709 * * 5381 3024 2611 * * * 2593 4220 3431 3903 2616 * * 8 0 * * * * * * 6622 0 0 S 9 3289 2552 3863 5365 * 3236 * 4514 4836 * * 4132 5633 3741 4078 2847 * 3729 * 5402 9 0 * * * * * * 6622 0 0 P 10 3150 3165 * * * 4326 * 4258 * 3672 * * 1750 4641 4213 3695 5777 3204 * * 10 0 * * * * * * 6659 0 0 T 11 3543 5567 1703 2986 4348 4821 * 4289 4666 5204 5318 * 3476 * * * 3114 5195 * * 11 37 * 5299 * * * * 6770 0 0 G 12 5080 5378 4495 3745 * 1013 * * * 5552 * 3148 4094 * 4985 3527 * 5579 * * 12 32 5516 * 1000 1000 * 0 6824 1000 1000 G 13 4416 * * 5469 * 1775 3736 * 4516 4350 5431 5645 3168 4297 2962 4013 4567 4925 * * 13 47 * 4965 * * * 0 6866 0 1000 P 14 2504 * 4799 4125 * 3036 3160 * * * 5550 4048 2845 5771 3823 4484 3578 4100 * * 14 0 * * * * 605 1546 6904 0 2118 P 15 5037 5474 2201 4111 * 5058 5959 * 4188 5767 4415 5586 1422 4940 6158 3947 * * * * 15 33 * 5476 * * 0 * 6331 0 1000 P 16 5929 * 4923 3551 * 2662 4386 4070 4444 * * 5909 1685 5009 6229 4557 3680 4026 * * 16 25 * 5865 * * 0 * 6342 0 1000 I 17 4091 5164 * 4751 6280 4799 * 1745 3880 3294 5063 * * 7084 4903 4621 4148 2486 6260 * 17 36 6352 6347 0 * 0 * 6521 1000 1000 F 18 4720 * 3743 3590 2759 * 3764 4202 * 3734 * 5601 4394 4683 3976 4361 4125 3055 * 4144 18 0 * * * * * 0 6612 0 1000 L 19 4713 * * 6121 3646 * * 2977 * 898 5544 * 4443 * 4755 * 6960 4423 * 4473 19 52 * 4832 * * 0 * 6765 0 1000 P 20 * * 5285 5905 * 5754 5998 6270 * 2840 * 5115 887 6417 4340 5502 3622 6605 * 5240 20 76 5507 5105 668 1432 0 * 6692 1700 2278 S 21 6582 * 4534 4102 4677 * 4054 3425 3763 1851 6777 * 3271 4305 4676 4047 6041 4673 * 5183 21 42 6518 5823 0 * 0 * 6739 1000 1558 D 22 3870 * 1575 3678 * 3310 * * 6666 * * 4159 3843 5892 5250 3548 2979 6374 * 6138 22 84 * 4149 * * 0 * 6625 0 1000 G 23 4084 * 4848 3368 * 1399 6681 5858 4039 * 5005 5277 4947 3530 4029 5075 4350 5236 * * 23 137 6582 3642 3459 138 2021 408 6734 1000 2622 Q 24 5104 * 3926 3284 5117 3198 5921 * 3018 4642 * 5167 5039 2381 3521 3886 5079 6324 5316 6305 24 60 * 4615 * * 1422 674 6648 0 3509 A 25 4366 * * 2174 * 4477 5396 5880 5832 5900 * 5897 2373 4173 4039 3235 3221 3827 * * 25 33 * 5483 * * 409 2018 6621 0 3763 L 26 5670 4298 * * 3271 5158 5633 2572 * 3004 4354 6289 * * * * 3711 1852 5378 4449 26 27 6674 6885 2807 222 903 1104 6709 1000 2205 V 27 7753 6372 6241 4319 4983 5418 * 3241 6462 3327 4979 6533 * 6741 5649 3743 1929 2064 * * 27 37 5313 * 686 1402 613 1531 6746 1667 1765 L 28 7014 * * * 3456 * * 1168 * 2093 6140 * * * 5531 * * 2429 * * 28 0 * * * * 0 * 6779 0 1000 G 29 * * * * * 31 * * * * * * * * 5535 * * * * * 29 0 * * * * * * 6780 0 0 R 30 * * * 5981 * * * * 5464 * * * * * 57 * * * * * 30 109 3785 * 1508 625 * * 6780 3754 0 G 31 4229 * 3313 3976 * 1945 4480 * 4758 6802 6439 4592 * * 5756 1855 3733 6818 * * 31 78 4863 5779 1502 628 * * 6780 2403 0 P 32 3937 5059 4686 3016 * 5390 5618 * 4328 4599 * 5230 1464 5576 4596 4324 4142 4916 * 5973 32 267 2564 * 1395 691 0 * 6764 4487 1593 L 33 4181 * 1433 2991 5487 5253 4877 4305 6247 4315 * 4248 5628 4019 * 3436 7064 7022 * 6640 33 220 2822 * 1585 585 * * 6716 4124 0 T 34 4955 2482 5896 6502 6511 * 6512 3469 * 1907 5998 4573 * 6441 6764 3696 2922 3404 * * 34 86 4107 * 1000 1000 * * 6716 3130 0 Q 35 4589 5543 2993 4668 5314 3540 5229 5877 3814 5058 * * 3184 3158 3099 3634 5072 3899 * * 35 115 3707 * 1258 781 * * 6716 3236 0 V 36 * 6342 3722 * 3635 * * 1533 * 2236 6642 * 5079 6621 * * 4741 2749 6913 5086 36 170 3391 5980 1800 488 * * 6700 3681 0 T 37 3946 * 2707 3720 5343 4778 * * 4641 6448 * 3160 4006 3379 4146 3939 3107 3685 * 7022 37 76 4284 * 2106 381 * 0 6675 2878 1000 D 38 6870 5446 897 3671 5834 6511 4110 5992 * 4882 * 5235 6891 * 5493 3108 5081 6780 * 7579 38 12 6899 * 2585 263 * 0 6677 1000 1000 R 39 3875 * 4304 5067 * 3947 5970 5340 2293 4955 * 4177 2477 4554 3014 3991 4456 * * * 39 33 5448 * 1864 463 0 * 6674 1635 1000 K 40 4075 6613 5826 4308 4232 4356 4155 6903 2783 4630 4214 6606 * 6818 2555 2586 4170 5810 5512 7618 40 72 4357 * 1298 753 * * 6699 2344 0 C 41 5155 3049 * * 6788 * * 1679 * 3949 6077 * * * 5373 6979 7029 1285 * * 41 48 4940 * 1335 728 * * 6699 2062 0 S 42 5100 * * * * * * * * * * * * 5217 * 83 * * * * 42 0 * * * * * * 6525 0 0 R 43 5956 * * * * 3099 6780 * 3319 5217 6303 5683 * * 623 5454 6579 5935 * * 43 14 6659 * 0 * * * 6525 1000 0 N 44 6628 * 5672 5390 5769 * 3957 5108 3224 3600 5268 3062 6052 3005 2560 4043 4019 4519 * 5357 44 0 * * * * * * 6525 0 0 Q 45 * * * * * * 307 * * * * 5216 * 2599 * * * * * * 45 10 * 7213 * * * * 6525 0 0 V 46 1273 2178 * * 5042 4576 * 5012 * 3134 6385 * * * * * * 3013 * 6361 46 9 * 7296 * * * 0 6528 0 1000 E 47 5308 6671 7175 2109 * * 5215 3959 2931 4768 5634 6722 * 3338 2593 4577 4198 3705 * * 47 0 * * * * 0 * 6530 0 1605 L 48 * 6117 * * 3405 * * 1518 * 1473 * * * * * * * 2461 * * 48 146 4541 4229 2581 264 * * 6525 2551 0 I 49 4820 6813 7038 3602 4533 * 4410 3835 3601 4911 5474 * * 7355 3737 3517 2348 3007 5596 4126 49 95 * 3972 * * 2372 310 6512 0 2839 A 50 2296 5910 * 5309 4814 * 5033 4123 4496 3730 6408 * 6648 4416 3660 4379 5070 2468 4811 3850 50 122 6408 3854 1000 1000 1294 756 6471 1000 3817 D 51 5486 * 1720 2792 * * * 6448 4349 5634 * 2672 * 5129 4716 2716 4134 5941 * * 51 155 * 3296 * * 572 1611 6942 0 4261 P 52 3214 6495 5726 3670 4594 3096 5128 6487 6480 3508 5108 4173 2824 5445 4800 4779 5578 4681 * 3243 52 49 * 4906 * * 405 2031 6506 0 4713 E 53 3930 * 2878 2430 * 3580 5869 5765 5206 6541 * 3370 5818 3834 4791 2887 4505 5095 * 5238 53 43 5506 7123 2759 231 0 * 6493 1582 3275 S 54 5536 * 2541 4485 * 1819 5283 * 3481 6712 * 3372 * 4760 5636 3737 3497 4774 * * 54 104 * 3852 * * * 0 6519 0 1000 R 55 4442 5231 3859 3976 6423 1966 4817 * 3930 4745 * 4716 7291 3758 2988 4618 6194 6852 4948 4349 55 16 * 6539 * * 1096 910 6519 0 3774 T 56 4228 4326 5878 4733 6177 6936 6006 4896 3586 4687 7058 4927 7320 2844 3758 3686 3324 3590 4370 3642 56 11 7068 * 3170 170 297 2427 6531 1000 2968 V 57 4527 5505 * 5993 2896 * 6961 4318 * 3387 6295 * * * 3868 5826 6417 1407 3881 3731 57 20 * 6195 * * 0 * 6517 0 1000 A 58 5132 6490 * 5182 3793 * 6688 4137 5401 2841 6918 * * 4520 4066 5159 2471 2725 4182 3257 58 39 * 5221 * * 0 * 6523 0 1644 V 59 4283 6483 5910 4631 5365 * * 2303 5571 2248 6617 * * 5639 5181 * 3640 1872 * 6541 59 0 * * * * 0 * 6521 0 2085 K 60 6760 * 1948 3044 * 6678 5324 6071 2931 4430 * 3596 * 4438 4263 4038 2910 6889 * * 60 42 5127 * 802 1230 * * 6520 2258 0 Q 61 5937 5068 1286 7557 7088 5943 6678 6666 5980 2571 * 4648 4419 3054 4697 4591 6139 6683 * * 61 93 3996 * 183 3069 * * 6520 3309 0 L 62 7157 * 5681 5670 4911 2622 5354 4936 4139 1849 5284 3822 7492 5351 5754 3623 3285 4713 * * 62 34 5407 * 0 * * * 6520 1975 0 G 63 5526 * 5096 6750 * 1606 4286 * * * * 5558 * * * 892 * * * * 63 26 5834 * 0 * * * 6525 1587 0 V 64 4440 * * * 6729 5527 7006 5619 3931 3823 7751 5848 * 4580 3073 1932 2093 3656 * * 64 114 3718 * 0 * * * 6974 3388 0 N 65 5794 * 6278 6568 * 5074 4941 * * * * 400 * * 5696 4882 3930 * * 5687 65 8 7531 * 0 * * * 6842 1000 0 P 66 5382 * * * * 774 5145 6554 6568 5794 * 6111 2538 * 4464 5205 5696 6508 * 4856 66 9 7252 * 0 * * * 6842 1000 0 S 67 5709 3844 * * * 4911 * 4350 * 6778 * * 6305 * * 2749 899 3032 * * 67 0 * * * * * * 6789 0 0 T 68 6355 6564 6239 6692 1791 4764 4909 6281 5670 3853 5320 * * 5127 3785 5661 3767 4171 4273 2583 68 12 6905 * 1000 1000 * * 6829 1000 0 V 69 6001 5985 * * 6045 * 6588 2285 * 1600 * * * * 6435 * * 1387 * 6158 69 57 4691 * 2221 348 * * 6750 2200 0 G 70 6668 * 2544 * 6148 5544 * * 5814 5509 * 564 * 6368 5625 5549 6217 * * * 70 22 6041 * 1000 1000 * * 6750 1585 0 V 71 * * 3141 5328 6472 642 * * 4344 6629 * 4232 6217 * 5626 5576 5017 6422 * * 71 76 4286 * 2345 316 * * 6750 2605 0 H 72 5154 * 7289 2866 6271 * 6423 3464 2429 5424 5384 5022 * 2778 2919 5212 4993 3363 * 5985 72 20 6165 * 1000 1000 * * 6749 1000 0 E 73 3723 * 6491 3595 6334 * * 6391 2345 4298 * 5634 2211 5658 2115 5266 5281 6732 * 6583 73 53 5121 7079 1000 1000 * * 6749 1000 0 L 74 * 6917 * * * * 5867 2189 * 1105 3631 * * * 6498 5893 6124 2577 * * 74 76 6710 4571 1000 1000 0 * 7210 1000 1000 K 75 3316 * 6365 2545 7018 2839 * 4462 2743 4598 6199 5575 4093 3946 4652 4293 5131 4180 * * 75 98 * 3928 * * * 0 7221 0 2729 P 76 4465 * * 5990 * 4315 5500 6393 1868 * 5928 5485 2005 4035 2456 4616 6809 * * * 76 50 * 4875 * * 3685 117 7188 0 4011 G 77 5640 * 3722 4766 * 1186 3509 5941 5816 * * 2384 6850 4810 5442 5991 * * * 4993 77 11 7049 * 2000 415 390 2079 6522 1000 4325 L 78 4180 * 3938 2873 * 4696 * 4899 2824 4243 7186 4325 * 3072 3714 3270 3868 4237 * * 78 29 * 5630 * * 375 2127 7164 0 2435 S 79 5494 7324 6154 2948 * 6759 6982 6375 3239 5037 5742 5866 2520 3961 3412 2668 3521 * 4867 6038 79 49 * 4904 * * 1702 530 7146 0 2034 G 80 2652 4524 * 5719 4672 5920 3127 5191 5927 5444 * 5734 * 4920 4726 4343 4527 2302 5861 2845 80 18 * 6338 * * 2427 297 6340 0 3044 S 81 3523 6044 * 3156 * * 7021 3722 3772 4044 * 6250 2641 4840 3869 3895 3074 3242 * * 81 0 * * * * 0 * 6327 0 2964 L 82 5009 * * * * * * 3414 * 333 * * * * * * * 3894 6140 * 82 0 * * * * * * 7157 0 0 S 83 4667 * 5138 3200 4492 * 3350 * 2326 5500 * 3689 * 3276 2959 3640 4457 6035 * 6788 83 0 * * * * * * 7162 0 0 L 84 5004 6307 2231 3639 5984 7240 2396 4786 6375 6294 * 3310 3507 5403 6548 3525 4440 4900 * * 84 0 * * * * * * 7162 0 0 G 85 * * 4670 * 6307 287 * * 5905 * * 3591 * * 5862 6463 * * * * 85 0 * * * * * * 7162 0 0 D 86 4958 * 390 3597 * * * 7538 * * 6644 6826 * 4408 * 4760 6173 * * * 86 0 * * * * * * 7170 0 0 V 87 6821 5706 6359 3262 * * * 2953 3595 3198 6135 * * 4500 2336 5200 3260 2864 * 6754 87 0 * * * * * * 7170 0 0 L 88 * * * * 3189 * * 1269 * 1575 * * * * * * * 2969 * 6367 88 0 * * * * * * 7170 0 0 Y 89 4053 4090 6401 2651 * 4068 5196 5982 3857 6292 * 6134 * 3598 2884 2640 3831 5384 * 4695 89 0 * * * * * * 6711 0 0 L 90 * * * * 4497 * * 1734 * 1072 6513 * * * * * * 2570 * * 90 101 6518 4147 0 * * * 6711 1000 0 V 91 2995 4692 * * * 1683 * 5061 * 2106 4275 * * * 5232 6257 6048 3003 * 5017 91 89 5874 4556 0 * * 0 6463 1000 2263 N 92 5255 * 2927 5528 5196 5128 4901 5819 5608 3356 * 2345 3654 3947 3551 4601 5773 3556 * 5348 92 50 * 4888 * * 672 1425 6357 0 2919 G 93 * 5762 3956 4329 4665 1306 * * 4284 5804 * 4962 5423 4464 4548 3304 4664 4007 * 6967 93 0 * * * * * 0 6362 0 2258 L 94 * * 5594 2681 5026 6557 4739 3881 2379 3088 4627 4613 * 3806 4524 2928 * 4671 * * 94 0 * * * * * 0 6331 0 2258 Y 95 * * * * 1396 * 3025 4257 * 6772 6467 * 3985 * 5518 5387 * 5663 * 1757 95 28 * 5678 * * 0 * 6339 0 2258 P 96 * * * 2976 * 4996 * 3517 3317 * * * 1534 4918 4492 5415 3761 3330 4863 * 96 0 * * * * 0 * 6201 0 1000 L 97 5346 * 4457 * 1871 * 2750 2856 * 4208 * * * * * * * 5215 * 1792 97 0 * * * * * * 6208 0 0 T 98 4222 * 4751 2605 * 4383 5066 * 3168 3481 * 5346 * * 2832 4587 2469 3660 * * 98 0 * * * * * * 6208 0 0 L 99 4804 * * * 4404 * * 1877 * 1938 4898 * * * * * * 1613 * 5421 99 0 * * * * * * 6208 0 0 R 100 * * 3801 2050 * * 3375 4775 4221 4906 * * * 4010 2351 3565 4134 4691 * 5125 100 0 * * * * * * 6093 0 0 W 101 5653 * * * 737 * * 3189 * 3936 * * * * * 4767 * 4921 3804 3967 101 0 * * * * * * 5766 0 0 E 102 * * 3961 528 * 4097 * * 4257 * * 3841 * 4016 * * * * * * 102 0 * * * * * * 5323 0 0 E 103 * * 2737 1454 * * 3657 * * * * * 1700 3354 * * * * * * 103 0 * * * * * * 4519 0 0 L 104 2870 * * * * * * 2925 * 1646 * * * 2927 * * * 1834 * * 104 0 * * * * * * 3541 0 0 S 105 2180 * * * * * * * * * * * * * * 719 2540 * * * 105 0 * * 0 * * * 2957 0 0 //