HHsearch 1.5 NAME c1xu6A_ FAM FILE c1xu6A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1xu6A_.a3m DATE Wed Jan 9 16:09:46 2013 LENG 80 match states, 80 columns in multiple alignment FILT 30 out of 34 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.5671 3.1841 SEQ >ss_dssp CCCSCCCSCCSSCSCCSSCCCCCCHHHHHHSCTTTCCTTSCEETTSSSCEECCCHHHHHHHHTSSSSSCCCCSCSSSSCC >sa_dssp EEEEEEEEBEDECEEEEEDCCDCEEECADECEEECCCDAACDDEECEEDEBDCCEEDCEEBDECEDDEDEDDEEEEEDEE >ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCC >ss_conf 93489897400051000101111067566313245567860501686653125622202455432005777655566899 >Consensus xxxxxxxxtxxxxxxxsxxkxxEtdxxCxxKxxdxCkxxCKwxxexxkKKCxldxexxxkxaExxxkegkxxnTntTgSn >c1xu6A_ GSHMLEVLTQKHKPAESQQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLDKEEAKKVADETAKDGKTGNTNTTGSS >UniRef50_Q4FKM9(411-481:497) Variant surface glycoprotein (VSG), putative n=2 Tax=Trypanosoma brucei RepID=Q4FKM9_9TRYP E=8e-11 s/c=0.96 id=35% cov=90% -------LTAEKSKHQSASKQLPNADACKSKTGDDCKDGCKWEGTGENKQCVVDKTYKPKQ-EEGAKDNKVTNTTGSNS- >UniRef50_Q4FKN3(417-484:499) Variant surface glycoprotein (VSG), putative n=1 Tax=Trypanosoma brucei RepID=Q4FKN3_9TRYP E=1e-09 s/c=0.94 id=24% cov=85% ----------RHTAQKAPLKVAQDGKECKDKQKNDCNGNCEWEGTDDKGTCKPKDEKEGVKAEG--NEGKGTNTTGSNS- >UniRef50_A5JS54(378-454:469) Variant surface glycoprotein n=1 Tax=Trypanosoma brucei RepID=A5JS54_9TRYP E=3e-09 s/c=0.81 id=31% cov=92% ----IDLATELKNRATSQQKKStdEKEKECNTKKGDACTGDCEWDKEKET--CKPKEKGEQANQETGAKDGKTTNATGSNS- >UniRef50_Q380W0(396-473:489) Variant surface glycoprotein (VSG, atypical), putative n=1 Tax=Trypanosoma brucei RepID=Q380W0_9TRYP E=5e-09 s/c=0.80 id=34% cov=84% --------------EKQKNKTGQTDETCEKKGtGAECKDGCKLTGVVDNKKCVVDPDFVKKEVEGVKAENDGkTNTNTTGSN >UniRef50_B3GVR4(389-473:489) Variant surface glycoprotein n=1 Tax=Trypanosoma brucei brucei RepID=B3GVR4_TRYBB E=7e-07 s/c=0.65 id=40% cov=100% -AELFDISASAAKACQSQKtqstKITETDTTCETKGtGDKCTSPCKEVEENGTKKCKLDKEEAKKLEEKTEQKGsKTVTSNTTGSN >UniRef50_B3GVM3(400-462:488) Variant surface glycoprotein n=1 Tax=Trypanosoma brucei brucei RepID=B3GVM3_TRYBB E=5e-05 s/c=0.78 id=42% cov=65% ----------------------ESEKKCNAKeKQTDCKPPCKWNPEEKdaKKKCTLSEEGKRQVEKTEQKDGGDSK------- >UniRef50_Q580P1(392-465:482) Variant surface glycoprotein (VSG), putative n=1 Tax=Trypanosoma brucei RepID=Q580P1_9TRYP E=9e-12 s/c=0.96 id=39% cov=89% ---------EKIKRNAATSKAKLSDDDCKAKTGGACKDGCKEISENGQKKCVVDKKEATKV-EGGEKDNKTGTTNITGSN >UniRef50_Q57X38(384-465:481) Variant surface glycoprotein (VSG), putative n=1 Tax=Trypanosoma brucei RepID=Q57X38_9TRYP E=9e-10 s/c=0.79 id=39% cov=99% -AELLEAKRQLQAQNKSETAKEAAEAKCNKIDKDtECKTPCKWNAEaqDEAKKCTLSEKG-QKTAEKANQEGKGAkTTNTTGNN >UniRef50_Q22KT8(405-485:501) Variant surface glycoprotein (VSG), putative n=1 Tax=Trypanosoma brucei RepID=Q22KT8_9TRYP E=1e-08 s/c=0.75 id=39% cov=99% GQSMLAIADAATKTCKPQ--LTETEATCAARGaGDDCKSPCKlVEEEGGKKKCTLDAKAAKKQAQnQETEDKDDKTTSTTGSN # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1502 0 0 S 2 803 * * * * * * * * * * * * 2232 * 2223 * * * * 2 0 * * * * * * 2179 0 0 H 3 * * * 803 * * 2223 * * * * * * * * 2232 * * * * 3 0 * * * * * * 2179 0 0 M 4 * * * * * * * * * 803 1228 * * * * * * * * * 4 0 * * * * * * 2179 0 0 L 5 * * * * 2790 * * 1569 * 948 * * * * * * * * * * 5 0 * * * * * * 2496 0 0 E 6 2514 * 1505 1082 * * * * * * * * * * * * * * * * 6 0 * * * * * * 2496 0 0 V 7 1894 * * * * * * 1922 * 2667 * * * * * * * 1691 * * 7 0 * * * * * * 2797 0 0 L 8 1434 * * * * * * * 2949 2162 3316 * * * * 2501 * * * * 8 0 * * * * * * 3084 0 0 T 9 3701 * 3282 * * * * * 3604 * * * * * 3330 2527 1104 * * * 9 0 * * * * * * 3177 0 0 Q 10 2745 * * 1642 * * * * 2956 * * * * 1755 * 3247 * * * * 10 0 * * * * * * 3577 0 0 K 11 2189 * * 3976 * * * * 2616 3114 * * 3795 4028 2313 3264 * * * * 11 0 * * * * * * 3698 0 0 H 12 3078 * * * * * 2146 3939 2428 * * 4224 4317 3241 * 3015 3807 * * * 12 0 * * * * * * 3698 0 0 K 13 3241 * * 4224 * * * * 1275 * * 2620 * * * 2417 3688 * * * 13 75 4308 * 0 * * * 3698 1000 0 P 14 2087 * 3888 2721 * * * * 3220 * * * 2352 4252 3040 * 3872 * * * 14 0 * * * * * * 3755 0 0 A 15 2817 2334 * 4121 * * 4259 * 4519 * * 2811 * 3122 * 2293 * * 4473 * 15 0 * * * * * * 3724 0 0 E 16 3331 * 4339 2931 * * * * 1840 * * 4724 * 2892 * 3302 2584 * * * 16 0 * * * * * * 3724 0 0 S 17 2622 4473 4519 * * * * * * * * * 4039 4121 4339 1204 2765 * * * 17 65 4511 * 2585 263 * * 3724 1000 0 Q 18 3468 * * 2237 * 4671 * * 3401 * 4630 4303 3342 1871 * * 3314 * * * 18 148 4643 4118 2000 415 * * 3673 1000 0 Q 19 3798 4043 * * * 4399 * * 2045 4024 * 4537 * 1663 * 3470 3895 * * * 19 45 5035 * 2000 415 * 0 3626 1000 1000 Q 20 4629 * * 3560 * 4399 * * 757 * * * * 3227 * 2955 * * * * 20 0 * * * * 0 * 3626 0 1000 A 21 1713 * * * * * * 3753 2592 4388 * * 3928 2819 * 5079 3173 4076 * * 21 0 * * * * * * 3670 0 0 A 22 2419 * * 4730 * 4646 * * 3621 4631 * * 5041 2498 * 2177 2433 * * * 22 161 3248 * 598 1560 * * 3665 1540 0 E 23 5075 * 4105 432 * * * * * 4582 * * 4720 3455 * * * * * * 23 0 * * * * * * 3531 0 0 T 24 2568 * 4175 4664 * * * * 3270 * * 4720 * * * 3624 961 * * * 24 0 * * * * * * 3531 0 0 E 25 3400 * 1316 1407 * 4175 * * 4975 * * 4664 * * * * * * * * 25 47 * 4975 * * * * 3531 0 0 G 26 2152 * 2865 2768 * 4867 * * 1800 * * * * * * 4119 3632 4999 * * 26 0 * * * * * 0 3520 0 1000 S 27 3507 * 4634 2106 * * * * 3697 * * 3599 * * * 3499 1353 * * * 27 0 * * * * 0 * 3586 0 1000 C 28 * 0 * * * * * * * * * * * * * * * * * * 28 0 * * * * * * 3590 0 0 N 29 4719 * * 1645 * * * * 2497 * * 1503 * 5147 * 4716 4439 * * * 29 49 4915 * 0 * * * 3590 1000 0 K 30 2227 * 4312 * * 3373 * * 1128 * * * * * * 4781 2780 * * * 30 0 * * * * * * 3590 0 0 K 31 4915 * * * * * * 4102 200 * * * * * 4719 * * * * * 31 57 4686 * 0 * * * 3590 1000 0 D 32 * * 2953 3585 * 1111 * * 3137 * * * * 4312 * * 2639 * * * 32 632 1496 * 299 2418 * * 3590 2468 0 Q 33 * * * 4915 * 1139 * * 2035 * * * * 2468 * * 4182 4923 * * 33 127 3564 * 0 * * * 3590 1741 0 N 34 3099 * 972 4439 * 4642 * * 4311 * * 3159 * * * * 2999 * * * 34 101 3884 * 0 * * * 3590 1335 0 E 35 3614 * 1913 1500 * 5497 * * 2950 * * 2760 * * * * * * * * 35 0 * * * * * * 3590 0 0 C 36 * 42 * * * * * * * * * * * * * * * * * 5119 36 84 4140 * 2000 415 * * 3590 1000 0 K 37 * * * 4923 * * * * 624 * * 2418 * * * * 2933 * * * 37 0 * * * * * * 3590 0 0 S 38 4682 * 1608 * * 3442 * * 4923 * * * 2879 4140 * 1960 4102 * * * 38 0 * * * * * * 3590 0 0 P 39 4439 * 4586 * * 1562 * * * * * 3311 1081 * * * * * * * 39 0 * * * * * * 3590 0 0 C 40 * 0 * * * * * * * * * * * * * * * * * * 40 0 * * * * * * 3590 0 0 K 41 4140 * * 2408 * * * * 406 * * * * * * * * * * * 41 56 4719 * 0 * * * 3590 1000 0 W 42 * * * 2654 4140 * * * * 3775 * * * * * * * 2464 916 * 42 0 * * * * * * 3590 0 0 H 43 * * 2744 1809 * * 4966 4642 4439 * * 2169 * * * * 3775 2720 * * 43 0 * * * * * * 3590 0 0 N 44 4102 * * 2398 * 1260 * * 3741 * * 4966 2932 * * 3370 * * * * 44 0 * * * * * * 3590 0 0 D 45 4923 * 4966 721 * * * * * * * * * * * * 1769 4837 * * 45 101 3884 * 1000 1000 * * 3590 1335 0 A 46 3457 * 2402 2776 * 1535 * * 4586 * * 3393 * * * * * 3447 * * 46 93 3997 * 1000 1000 * * 3590 1366 0 E 47 * * 1949 1359 * 2121 * * 3043 * * * * * * * * * * * 47 57 4686 * 1000 1000 * * 3590 1000 0 N 48 3455 * 3600 * * 5077 * * 1155 * * 2202 * 4642 * 5248 3970 * * * 48 188 3639 4586 529 1704 * * 3590 1551 0 K 49 4065 * * * * 2667 * * 353 * * * * * * * * * * * 49 0 * * * * * 0 3551 0 1000 K 50 * * * 4321 * * * * 456 * * 4634 * 4756 4791 * 3219 * * * 50 0 * * * * 0 * 3551 0 1000 C 51 * 0 * * * * * * * * * * * * * * * * * * 51 0 * * * * * * 3590 0 0 T 52 * * * * * * * * 1556 * * * * * * * 1404 1826 * * 52 0 * * * * * * 3590 0 0 L 53 * * * * * * * * 2780 917 * 5317 2408 * * * * 3166 * * 53 0 * * * * * * 3590 0 0 D 54 * * 906 * * * * * 2408 * * 5131 * * * 2003 * * * * 54 43 * 5085 * * * * 3590 0 0 K 55 4706 * 2655 2004 * * * * 1765 4280 * 4294 3084 * * * 4681 * * * 55 0 * * * * 0 * 3586 0 1000 E 56 * * 2796 944 * * * * 2285 * * 5045 * * * * 3996 * * 4716 56 0 * * * * * * 3590 0 0 E 57 3025 * * 1513 3775 2287 * * 3648 * * * * * * * * * * 2565 57 92 * 4014 * * * * 3590 0 0 A 58 1862 * * 2503 * 3458 * 4529 1825 * * * * * 5274 * * 3239 * * 58 0 * * * * 980 1020 3583 0 1435 K 59 * * 4118 * * 3277 * * 1477 * * 4609 2531 2437 4608 * 4632 * * * 59 0 * * * * 0 * 3584 0 1000 K 60 3938 * * * * * * * 845 * * * 5045 3684 4710 * 2932 3311 * * 60 0 * * * * * * 3590 0 0 V 61 3462 * * 3775 * * * 5077 3311 3133 * 3511 * 2058 * 4140 4102 2746 * * 61 115 * 3710 * * * * 3590 0 0 A 62 1090 * * 2377 * 4937 * * 4020 * * * * 4462 * * * 2335 * * 62 74 4328 * 1585 585 0 * 3519 1000 1495 D 63 * * 4020 345 * 5147 * * 4686 * * * * 3572 * * * * * * 63 56 4719 * 0 * * * 3590 1000 0 E 64 3184 * * 2670 * 1795 * * 2074 * * 4311 * 3715 * * 3635 * * * 64 77 * 4270 * * * * 3590 0 0 T 65 1809 * 3963 2831 * 2133 * * 4980 * * * * * * * 2748 3302 * * 65 85 5500 4824 2000 415 * 0 3529 1000 1000 A 66 2261 * * 1801 * 3871 * * 3181 * * 2263 * 4585 * * 3721 * * * 66 71 4379 * 2670 247 938 1065 3509 1379 1715 K 67 3756 * * 4630 * * * * 1081 * * 4244 * 1789 * * 3824 * * * 67 81 * 4187 * * * 0 3569 0 1000 D 68 * * 1262 1225 * * * * 3394 * * * 4052 * * * * * * * 68 48 4933 * 1000 1000 * 0 3483 1000 1604 G 69 4911 * * 4830 * 718 * * 4583 * * 2928 * * * 3214 4549 * * * 69 40 5198 * 0 * * 0 3483 1000 1604 K 70 * * 2714 4549 * 4561 * * 510 * * 4052 * * * * * * * * 70 114 * 3722 * * 1022 978 3483 0 1604 T 71 4527 * 1508 4143 * 2073 * * * * * * * * * 4734 2242 4013 * * 71 248 2662 * 495 1783 564 1628 3343 1848 1884 G 72 2697 * * * * 1666 * * 3621 * * 4348 * * * 4598 1617 4920 * * 72 228 2775 * 400 2046 * 0 3401 1685 1000 N 73 * * * * * * * * 2412 * * 987 * * * * 1701 * * * 73 0 * * * * 0 * 3401 0 1000 T 74 3465 * * * * * * * 4108 * * * * * * 4914 289 * * * 74 0 * * * * * * 3369 0 0 N 75 4588 * * * * * * * * * * 589 * * * 4326 2037 * * * 75 0 * * * * * * 3312 0 0 T 76 4588 * * * * 2037 * 4301 * * * * * * * * 591 * * * 76 0 * * * * * * 3312 0 0 T 77 * 4101 * * * * * * * * * * * * * 2139 485 * * * 77 0 * * * * * * 3312 0 0 G 78 * * * * * 372 * * * * * 2139 * * * * * * * * 78 0 * * * * * * 3312 0 0 S 79 * * * * * * * * * * * 3579 * * * 126 * * * * 79 0 * * * * * * 3193 0 0 S 80 * * * * * * * * * * * 197 * * * 2970 * * * * 80 0 * * 0 * * * 2804 0 0 //