HHsearch 1.5 NAME c1wwuA_ FAM FILE c1wwuA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1wwuA_.a3m DATE Wed Mar 10 06:52:31 2010 LENG 99 match states, 99 columns in multiple alignment FILT 49 out of 53 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.3948 -0.6602 SEQ >ss_dssp CCCCCCCCCCCCCCSCCCCCCTTCCHHHHHHHHHHHTCCTTHHHHTTSSCHHHHHTCCHHHHHHHHTTTHHHHHHHHHHHHHHHHTTSCCCSSCSCSCC >sa_dssp EEEEEEEEEEEDEDEEDEEACDECCDEDAECAAEDBEBCEEBBDCABECDADDABECDDEDADEDBDECAEDACCBADDCCDDBEEDEEEEEEEEEEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >ss_conf 986778866767889983788888899999999972975679998516898999517899999973415789999999998743443132102276789 >Consensus gxxgsxxxxixxsxxxxxxLxxxSspxEVxxWLxxkgFSxxtvxxLxxlxGaxLlxLtkeeLxxicgxEGxRlxsqLxvqkxxxxxxxxxsElxxxxxx >c1wwuA_ GSSGSSGFRVERSQPASQPLTYESGPDEVRAWLEAKAFSPRIVENLGILTGPQLFSLNKEELKKVCGEEGVRVYSQLTMQKAFLEKQQSGSELSGPSSG >UniRef50_UPI0001926E3E(470-552:687) PREDICTED: similar to epidermal growth factor receptor pathway substrate 8 n=1 Tax=Hydra magnipapillata RepID=UPI0001926E3E E=5e-08 s/c=0.70 id=31% cov=82% ------------SVDVFIPLYKSSTADDVSRWLHKLGFSDRTIDILRGKTALELFKINKEDLVDLIGkDEGSQLHEELQVQNGAKTRHKTLTE------- >UniRef50_C3YG11(502-569:571) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YG11_BRAFL E=5e-18 s/c=1.35 id=30% cov=68% ---------ISRSPIHNAALDKSYSAKEVAKWMKKHGFSRSSIDAFQGLDADRLHGLTKREMEIVCPEEGARLYN------------------------ >UniRef50_B3S5L2(812-902:1305) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S5L2_TRIAD E=4e-17 s/c=0.98 id=34% cov=74% -------------------INPNSSKEEIRQYLTERNFSAKTTDLLGDYGGFELLSLTKEELAQIAPGEENRLHSLLTTQRSQLPDEQQKS-------- >UniRef50_Q95TJ6(605-692:712) CG8907 n=13 Tax=Drosophila RepID=Q95TJ6_DROME E=8e-16 s/c=0.96 id=36% cov=88% ---------LEILKTPEIFITQNSKPSEVEEWLRGKGFSDIIIKRLHTLSGEEIFALSPHTIESYFGrRESRRLISQIVLQKNFCEyKTIRSSELSA--- - >UniRef50_Q5DAS8(61-129:227) SJCHGC05412 protein n=1 Tax=Schistosoma japonicum RepID=Q5DAS8_SCHJA E=7e-11 s/c=0.99 id=38% cov=56% ----------------------EMTASQVTKWLHQSNFEN-LVETFKNFTGGDILRLTKEDLLSVCGSlEGLRLYNPL---------------------- >UniRef50_UPI0000DB76EC(88-147:186) PREDICTED: similar to gemini CG30011-PC, isoform C n=1 Tax=Apis mellifera RepID=UPI0000DB76EC E=1e-09 s/c=1.07 id=22% cov=23% -----------------VQLSPDASAAQTTTWLRASRFN------------------------------------------------------------ >UniRef50_C4Q5Z9(689-759:771) Eps8-related protein n=1 Tax=Schistosoma mansoni RepID=C4Q5Z9_SCHMA E=5e-12 s/c=1.01 id=27% cov=71% GGTGLKSVPIPSTTldKPDQRLSKYASKEEVAEWLVAHQFSPKAISALKGFKGIDLYTMNRTQLEQHVGPE----------------------------- - >UniRef50_A9VBS2(450-522:523) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VBS2_MONBE E=3e-06 s/c=0.72 id=33% cov=58% -----------------VTLTAQSTTDDVQRWLFHNHFHHFLHD-LEHYDGSVLMGLDQKELITICGtAEGIRMH------------------------- >UniRef50_Q12800-3(255-330:451) Isoform 3 of Alpha-globin transcription factor CP2 n=3 Tax=Eutheria RepID=Q12800-3 E=6e-16 s/c=1.12 id=24% cov=77% -GNGSPNHQPEPPPPVTDNLLPTTTPQEAQQWLHRNRFSTFT-RLFTNFSGADLLKLTRDDVIQICgPADGIRLFNAL---------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2332 0 0 S 2 * * * * * 1121 * * 3058 * * * * * * 1736 3061 * * * 2 0 * * * * * * 3138 0 0 S 3 2373 * * * * * * * * * * 1792 * 3061 * 2160 2518 * * * 3 0 * * * * * * 3138 0 0 G 4 2594 * * * * 640 * * * 3604 * * * * * 3177 * * * * 4 0 * * * * * * 3034 0 0 S 5 3825 * * * * * * * * 2959 * * * 2074 * 828 * * * * 5 0 * * * * * * 3123 0 0 S 6 3976 * * * * * * * 1586 * * * 2236 * 3825 1641 * * * * 6 0 * * * * * * 3123 0 0 G 7 * * * * * 4280 4047 * 2980 * * 1617 2366 * 3125 2980 * * * * 7 0 * * * * * * 3125 0 0 F 8 * * * * 1761 * 2829 * * 3950 * * * * 3179 3279 * 2200 * 3869 8 0 * * * * * * 3125 0 0 R 9 * * * 3524 * * 4255 * 3707 * * * 3124 2879 1675 * 2628 4096 * * 9 0 * * * * * * 3197 0 0 V 10 * * * 4128 * * * 1578 * 2926 * * 3012 * * 4900 * 1649 * * 10 0 * * * * * * 3603 0 0 E 11 * * * 1732 * * 3808 * * * * 5098 1385 2788 * 3822 * * * * 11 0 * * * * * * 3697 0 0 R 12 * * * * * 3405 4553 2854 3439 * 3893 * 3889 4901 1658 3959 * * 4470 4725 12 101 * 3893 * * * * 3689 0 0 S 13 4271 * * * 4802 * * * * 3336 5099 * 3582 5302 3546 967 3675 * * * 13 0 * * * * * 0 3817 0 1000 Q 14 4399 * * * * * * 4045 3813 4443 * 3727 2112 2538 5081 3540 3143 3900 * * 14 130 4157 5042 1000 1000 * 0 3817 1000 1000 P 15 2549 * 1978 4668 * * * 3623 4351 * * 5025 2704 5211 5107 4744 3213 5611 * * 15 0 * * * * 885 1126 3921 0 1495 A 16 5613 * * * * 5170 4268 * * * * * 1562 * 3770 3048 2381 3067 * 4167 16 0 * * * * * 0 3909 0 1000 S 17 3116 * 3751 2501 4125 5271 5613 * * * * 4268 4578 * 4658 1651 4059 5761 * * 17 35 * 5403 * * * 0 3909 0 1000 Q 18 2928 * 4710 4167 * 5337 4837 2180 * 5632 5211 * 3857 3159 * * * 1909 * * 18 0 * * * * * 0 4074 0 1438 P 19 3563 * 5378 5134 4046 * 4213 * 5297 * * 3536 1803 4253 3951 6100 3406 3500 * 4806 19 62 4562 * 583 1589 0 * 4079 1268 1438 L 20 * * * * * * * 1832 * 476 * * * * * * * * * * 20 0 * * * * * * 4238 0 0 T 21 * * 2693 * * * * * * 5348 5124 2355 * * 4635 2845 1529 * * 3822 21 0 * * * * * * 4238 0 0 Y 22 4617 * 4123 4930 5283 * * * 2435 4635 4801 * 1988 3057 5096 4268 * * * 2955 22 0 * * * * * * 4238 0 0 E 23 * * 3276 2387 * 4307 3799 * 3393 * * 2999 * 3776 * 2641 4168 * * 3755 23 0 * * * * * * 4202 0 0 S 24 3478 * * * 4981 * * * * * 5166 * * * * 409 4158 * * 4591 24 0 * * * * * * 4200 0 0 G 25 * * 6044 * * 5251 * * 4425 * * 4317 3859 5778 3115 1442 1779 * * * 25 0 * * * * * * 4200 0 0 P 26 2534 5633 * * * * * 3616 3591 * * * 856 5049 5649 * 4642 * * * 26 0 * * * * * * 4200 0 0 D 27 2947 * 2903 1565 5778 4927 * * 4591 5123 * * 5806 3722 4707 3108 6038 6136 * * 27 0 * * * * * * 4200 0 0 E 28 * * 2330 606 * * * * * * * * * 3165 * 4942 * * * * 28 0 * * * * * * 4191 0 0 V 29 5470 * * * * * * 4392 * 4942 * * * * * * 2529 466 * * 29 0 * * * * * * 4191 0 0 R 30 3198 * * 4092 * 6264 5784 * 2836 * * * * 1870 2684 4152 2509 * * * 30 0 * * * * * * 4191 0 0 A 31 2260 * 4649 2866 * * * * 3579 5514 6049 3376 * 2428 2961 6311 4312 5645 * * 31 0 * * * * * * 4191 0 0 W 32 * * * * * * * * * * * * * * * * * * 70 4392 32 0 * * * * * * 4191 0 0 L 33 * * * * 5648 * * * * 91 4597 * * * * * * * * * 33 0 * * * * * * 4191 0 0 E 34 4942 * * 3084 4647 * 3126 * 2883 4176 5648 5784 * 2493 3349 * 3160 3672 * * 34 0 * * * * * * 4191 0 0 A 35 2037 * * 3649 4711 4071 3499 5068 2680 * * 3869 * 3543 4747 4344 * 4942 * 4990 35 0 * * * * * * 4191 0 0 K 36 * * * 4649 * * 2463 * 1194 4772 * 2383 * 4998 4392 4859 * * * * 36 0 * * * * * * 4191 0 0 A 37 4230 * 5090 * * 1066 4657 * * * * 3128 * 4838 2113 5688 * * * * 37 0 * * * * * * 4192 0 0 F 38 * * * * 163 * * * * 4144 * * 6214 * * * * * * 4776 38 46 * 5001 * * * * 4192 0 0 S 39 6132 * 4128 5048 * 4758 4047 * * * * 3823 * * * 501 5410 * * * 39 0 * * * * 0 * 4153 0 1000 P 40 2971 * 3566 3448 * * 4694 * 3730 * * 3437 2717 5011 3175 2936 3930 * * * 40 44 * 5071 * * * * 4169 0 0 R 41 4914 * * * 4007 6072 5614 2840 3071 4869 5685 4207 4544 4036 3190 4024 5850 4896 * 2497 41 194 6361 3140 1000 1000 0 * 4147 1000 1000 I 42 3556 * * * * * * 2647 * 3213 * * * * * 4594 948 4283 * 4779 42 208 * 2899 * * 0 * 4120 0 1840 V 43 * 2814 * * * * 4452 1963 * 5000 5467 * * * * * 4282 1151 * * 43 0 * * * * 0 * 4117 0 1667 E 44 5144 * 1931 2938 * * 5670 * 2597 * * 4547 * 4306 2460 3530 4943 * * * 44 57 * 4694 * * * * 4169 0 0 N 45 3116 3074 * * * * * 4643 5085 2958 4752 4160 4977 4727 4425 3075 2297 6141 * 5487 45 0 * * * * 0 * 4077 0 1000 L 46 * * * * 1681 * * * * 539 * * * * * * * * * * 46 0 * * * * * * 4169 0 0 G 47 2959 * 5046 4694 * 1303 4463 * 3426 * * 5958 * 3794 3522 3988 5596 * * * 47 0 * * * * * * 4169 0 0 I 48 5546 * 3574 * * 2187 4694 3039 * * * 2205 * 4208 * 5080 4463 2566 * * 48 0 * * * * * * 4169 0 0 L 49 * * * * 1804 * * * 4678 1042 4789 * * 5046 * * * 5918 * 3239 49 0 * * * * * * 4169 0 0 T 50 3653 * 2978 * * 4378 * * 4854 * * 2703 * 5954 * 2024 1760 * * * 50 0 * * * * * * 4111 0 0 G 51 3630 * * * * 122 * * * * * * * * * * * * * * 51 0 * * * * * * 4111 0 0 P 52 1309 6606 4119 4471 4378 5263 5148 4854 5864 4667 * 5553 4742 * 5526 2588 5164 6029 * * 52 0 * * * * * * 4111 0 0 Q 53 * * 1693 2571 * * * * * 5864 4930 4095 * 1713 4593 * 5112 4693 * * 53 0 * * * * * * 4111 0 0 L 54 * * * * * * * 2493 * 329 5240 * * * * * * * * * 54 0 * * * * * * 4111 0 0 F 55 * * * * 1265 * 4593 * * 1163 4026 * * * * * * * * 4854 55 0 * * * * * * 4111 0 0 S 56 4471 * 5148 5954 * 2811 * * 3157 * * 4808 * 5526 2011 1663 4854 * * * 56 0 * * * * * * 4111 0 0 L 57 * * * * * * * 3855 * 484 2211 * * * * * * * * * 57 0 * * * * * * 4111 0 0 N 58 4637 * 4693 * * 5526 5148 * 5922 * * 2360 * 6152 4472 2530 1226 * * * 58 0 * * * * * * 4111 0 0 K 59 * * * 4808 * * * * 767 * * * 3373 4693 2050 * * * * * 59 0 * * * * * * 4111 0 0 E 60 5553 * 2341 1328 * 4623 4471 * 4693 5044 * 5688 * 4398 3339 5148 4854 * * * 60 0 * * * * * * 4111 0 0 E 61 * * 1599 1012 * * 5044 * * * * * * 3344 * * 4471 * * * 61 0 * * * * * * 4111 0 0 L 62 * * * * 6029 * * 3666 * 278 4593 * * * * * * 4649 * * 62 44 5063 * 0 * * * 4111 1000 0 K 63 4378 4984 * 2434 * * * 2512 2787 4783 * * * 3027 2502 * * 3653 * * 63 0 * * * * * * 4111 0 0 K 64 3364 * 4667 * * * * 3462 3363 5553 3846 * * 1535 * 3619 2661 * * * 64 0 * * * * * * 4111 0 0 V 65 5044 * * * * * 4854 1488 * 2967 * * * * * * * 1434 * 3630 65 0 * * * * * * 4111 0 0 C 66 4378 558 * * 3630 5063 * 3980 * 5678 * * * * * 4496 * 4854 * * 66 104 3841 * 0 * * * 4111 1549 0 G 67 * * 5789 * * 993 5669 * * * * * 1121 * * * * * * * 67 532 1800 5549 0 * * * 4111 3077 0 E 68 1701 * 2939 1572 * 4359 * * * * * * 4820 4110 4453 4720 * * * * 68 144 3394 * 0 * 0 * 4104 1910 1201 E 69 * * 1970 425 * * * * * * * * * * * * * * * * 69 0 * * * * * * 4093 0 0 G 70 4231 * * 4279 * 238 * * * * * * * * * 4407 * * * * 70 0 * * * * * * 4027 0 0 V 71 2105 * * * * 2884 * 1788 * 4686 * 4279 3949 * 4407 2974 * 6263 * * 71 0 * * * * * * 4027 0 0 R 72 * * * * * * * * 3680 * * * * 4599 236 * * * * 4982 72 0 * * * * * * 4027 0 0 V 73 * * * * 5172 * * 4231 * 1080 3349 * * * * * * 1524 * * 73 0 * * * * * * 4027 0 0 Y 74 * * * * 1875 * 2526 4407 * 4231 * 4990 * * * * * * * 1245 74 0 * * * * * * 4027 0 0 S 75 * * * 4503 3853 * * * * 5846 * 1498 * * * 1007 * * * 5831 75 0 * * * * * * 3873 0 0 Q 76 2406 * * 4304 * * * * * 4103 * * 4737 852 4021 5146 5550 * * * 76 0 * * * * * * 3728 0 0 L 77 * * * * * * * 2397 * 426 * * * * * * * 3919 * * 77 0 * * * * * * 3728 0 0 T 78 * * * * * * * * * 2819 3207 4235 * 1828 * 4935 1676 3845 * * 78 0 * * * * * * 3390 0 0 M 79 * * * * * * * 3140 * 2928 5538 4865 * * * 3596 2833 1070 * * 79 0 * * * * * * 3390 0 0 Q 80 4017 * * * * * * 4865 * * * * * 520 3596 * 4868 3477 * * 80 0 * * * * * * 3390 0 0 K 81 3596 * * * * * * * 808 * * 3768 * * 1874 * * * * * 81 0 * * * * * * 3390 0 0 A 82 1334 * * * * 3153 * * * * * 2831 * * * 1514 * * * * 82 0 * * * * * * 3410 0 0 F 83 1809 * * 3604 2927 * * * * 2533 4495 * * 2762 * 4640 3864 5179 * * 83 0 * * * * * * 3116 0 0 L 84 * 3599 * * * * * 2678 3522 984 4574 3604 4495 * * * * * * * 84 0 * * * * * * 3116 0 0 E 85 * * * 885 * * * * 3393 * * * 3400 3180 * 4169 3282 * * * 85 332 2284 * 0 * * * 3117 1487 0 K 86 * * 1314 3751 * * * * 1916 * * * * 4744 2626 4077 * * * * 86 92 4022 * 0 * * * 3090 1000 0 Q 87 3860 * * 3175 * 4384 3089 * 4410 * * * * 2703 * 2449 2676 3123 * * 87 0 * * * * * * 3046 0 0 Q 88 * * * 4410 * * 3824 3390 2630 * * 3198 * 2188 3145 2443 * * * * 88 0 * * * * * * 3046 0 0 S 89 * * * * * 2160 * * 2280 * * * * 3175 1898 3761 3089 * * * 89 0 * * * * * * 3046 0 0 G 90 3256 * 4384 * * 2703 * 4506 3175 3089 * * * * * 2938 3264 2418 * * 90 0 * * * * * * 3046 0 0 S 91 * * * * * * * * * * * * * * * 545 1668 * * * 91 0 * * * * * * 3046 0 0 E 92 * * * 0 * * * * * * * * * * * * * * * * 92 0 * * * * * * 2954 0 0 L 93 * * * * * * * * * 0 * * * * * * * * * * 93 0 * * * * * * 2723 0 0 S 94 * * 3428 1082 * * * * 2898 * * * * 3005 * 2505 * * * * 94 0 * * * * * * 2695 0 0 G 95 319 * * * * 2333 * * * * * * * * * * * * * * 95 0 * * * * * * 2131 0 0 P 96 * * * * * * * * * * * * 0 * * * * * * * 96 0 * * * * * * 1000 0 0 S 97 * * * * * * * * * * * * * * * 0 * * * * 97 0 * * * * * * 1000 0 0 S 98 * * * * * * * * * * * * * * * 0 * * * * 98 0 * * * * * * 1000 0 0 G 99 * * * * * 0 * * * * * * * * * * * * * * 99 0 * * 0 * * * 1000 0 0 //