HHsearch 1.5 NAME c1wbxB_ FAM FILE c1wbxB_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1wbxB_.a3m DATE Tue Mar 9 22:41:37 2010 LENG 99 match states, 99 columns in multiple alignment FILT 109 out of 647 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.9 EVD 0.4349 -0.7712 SEQ >ss_dssp CCBCCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECSCCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTSSSCEEEECCTTC >sa_dssp EDDDBECEBCCDEECEDEEEBCABADACCADCDEBDBCABDDEEECEECEDCEDDECEDEBCDBCACBEBDACEECDBAACADBECCEEDDDCEBDDEE >ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEECCEECCCCCCCEEECCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCC >ss_conf 977767999705866578627999999645576319999747768045400124416885189999999926757889999992667996599862179 >Consensus vxxxPxVxvxxxxxxxxgxxxtLxCxxxgfxPxxixvxWxxxgxxxxxxxxxxxxxxxdgtyxxxsxlxixxxxxxxyxCxVxHxxlxxpxxxxxxxxx >c1wbxB_ IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM >UniRef50_Q9TP04(203-296:388) MHC class I antigen n=1 Tax=Protopterus aethiopicus RepID=Q9TP04_PROAT E=7e-06 s/c=0.55 id=14% cov=80% ----PETKIFRKRRHDG--KYTFSCHASEFFPSALSIKWINIKTNEKKEETAEALPNNDGTFQAWVDIDSDLECARDLVCMITH--------------- >UniRef50_UPI0001A5EB10(282-378:490) PREDICTED: similar to immunoglobulin lambda-like polypeptide 1 n=1 Tax=Homo sapiens RepID=UPI0001A5EB10 E=0.0003 s/c=0.48 id=11% cov=58% --------------------------------------WYVDGMEVHNAKTKPREEQFNSTFRVVSVLTVVHQDWlngKEYKCKVSNKGLPAPIEKT--- -- >UniRef50_O42404(145-239:296) ICOS ligand n=2 Tax=Gallus gallus RepID=O42404_CHICK E=2e-09 s/c=0.67 id=11% cov=90% -----------RNSYSTGEEVTFSCRSDNGYPEPNVYWINRTDNTRLSQSDFNITQHPDGTYSVLSTLKVNATSDMQLECFIENKVLQENTSANYTEEM >UniRef50_UPI0000ECC367(137-226:229) Programmed cell death 1 ligand 1 precursor (Programmed death ligand 1) (PD-L1) (PDCD1 ligand 1) (B7 homolog 1) (B7-H1) (CD274 antigen). n=2 Tax=Gallus gallus RepID=UPI0000ECC367 E=0.0005 s/c=0.51 id=5% cov=38% -------------------------------------------QDLTDKANTSYETGSDQLYRVTSTLTVKNRTCENFRC------------------- >UniRef50_Q00609(146-235:306) T-lymphocyte activation antigen CD80 n=11 Tax=Muroidea RepID=CD80_MOUSE E=4e-05 s/c=0.54 id=18% cov=73% ------------------------CFASGGFPKPRF-SWLENGRELPGINTTISQDPESELYTISSQLDFNTTRNHTIKCLIKYGDAHVSEDFTWE--- >UniRef50_UPI000175FFA4(113-213:898) PREDICTED: similar to signal-regulatory protein beta 1 n=1 Tax=Danio rerio RepID=UPI000175FFA4 E=7e-11 s/c=0.68 id=19% cov=96% ----PVVSIISPEAVLKRKSVV-ECWARSFSPPQIMFTWTRGGNKIQEPQKLQVNRTEDGLYDAVSFLTFIPQISNQnisFGCEVQHSALVKPVLEEFTP HI >UniRef50_UPI000155C8B9(1062-1170:1744) PREDICTED: similar to IgE immunoglobulin n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155C8B9 E=3e-07 s/c=0.52 id=19% cov=99% --KAPKVYLFPPPTEEMsrGPSLTLVCLIKDFYPASILVQWQEGSAVLETQAAQSQNPSCDHQSRRCSAvskLEIPKSRWMartRYHCQVFHISRRGILI RnastHYDPRV >UniRef50_C3YK94(133-222:556) Putative uncharacterized protein n=3 Tax=Branchiostoma floridae RepID=C3YK94_BRAFL E=2e-06 s/c=0.60 id=20% cov=88% VRVPPTVAVGPQDPYQAiyKTDVSLNCIVANAKPEITSLYWLKNRQPVDTTMSGPSakYKDGNTVFPSLVIRNISKEDAGTYTCVADHVT---------- --- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 1562 * 3808 * * * * * * * 761 * * 1 0 * * * * * * 5110 0 0 Q 2 * * * * * * * * 3114 4414 * * 4607 1309 2458 4811 2513 * * * 2 0 * * * * * * 6256 0 0 K 3 3309 * 4414 3103 4925 * * * 2882 * * 4761 4853 * 2488 2496 * 2834 * * 3 0 * * * * * * 6563 0 0 T 4 1520 * * 3364 * * * * 3881 5233 * * 2460 * 5649 2382 4468 5582 * * 4 28 5686 * 1000 1000 * * 7038 1000 0 P 5 * * * * * * * * * * * * 0 * * * * * * * 5 24 5912 * 0 * * * 7699 1000 0 Q 6 5234 * 4866 2550 * * 6578 5868 2343 * * * 6141 2410 4336 3629 3004 3534 * * 6 22 6058 * 0 * * * 7716 1000 0 I 7 4801 * * * 6277 * * 3252 * 3337 5014 * 5219 * * * 4199 655 * * 7 33 5477 * 1000 1000 * * 7716 1117 0 Q 8 5169 * 5212 3327 4478 * 3762 4846 3445 4527 * 6156 * 5351 4296 2099 3485 4582 5351 3668 8 102 4473 5439 839 1182 * * 7716 2197 0 V 9 4532 * * 5105 5986 4491 * 1798 * 2678 5156 * 6177 * * 5998 * 1450 * * 9 111 5336 4334 0 * 934 1070 7712 1583 1657 Y 10 5952 * * 4187 1838 3175 * 4026 6384 3355 5158 * 4936 5409 6350 2868 3636 * * 4228 10 79 4702 6047 1000 1000 710 1363 7671 2164 2950 S 11 4094 * 6401 5428 5479 4901 6264 * 5357 3891 * 6057 1483 4315 4568 2458 3551 * * 6244 11 19 * 6276 * * 550 1658 8047 0 2262 R 12 3499 4976 6546 3815 * * 5257 6191 3213 4704 6084 6392 2434 4341 3084 2754 4382 5370 * 6309 12 58 5263 6224 1366 708 0 * 8078 1663 1632 H 13 4268 6679 5506 2953 * 5386 3548 * 3288 5402 * 3541 3583 3657 3712 2623 6239 4288 * * 13 57 5377 6078 1000 1000 * 0 8180 1689 1000 P 14 3629 * 4842 3200 * 6147 5046 5561 6444 4780 * 6681 1756 4027 3631 2806 4443 6401 * 6241 14 137 3459 * 574 1606 968 1032 8202 3955 1587 P 15 2957 * * 4143 5469 4454 5232 3841 6092 3877 5505 4989 3425 6494 6418 5615 3976 1741 * 6072 15 66 4885 6493 771 1273 0 * 8233 2378 1000 E 16 5544 * 3002 2245 * 5680 * * 4054 4598 5505 5326 4083 3999 4855 3744 2951 3637 6381 5480 16 68 4446 * 1186 836 0 * 8252 2338 1000 N 17 4970 6819 4499 2712 5506 4181 4528 3985 4836 2789 5525 5603 2987 6751 5607 3507 4805 4519 4901 * 17 202 3547 4468 678 1415 * * 8227 3801 0 G 18 5745 * 5529 3975 * 1144 5419 * 4979 * * 2456 6709 5003 4197 3327 6479 * * * 18 28 6899 6538 1000 1000 1025 976 8166 1000 2700 K 19 4965 * 3463 2643 * 4185 4957 * 3523 * 6290 3722 4942 2387 3827 3604 4695 4661 * * 19 18 * 6347 * * 592 1571 8146 0 2284 P 20 4917 * 4042 2837 6731 5053 5807 6598 3228 5746 6624 6224 2712 4612 5249 2497 3393 4383 6697 * 20 0 * * * * 0 * 8186 0 1732 N 21 2584 * 5915 5586 * 4568 * 5733 6355 3476 5638 3683 5792 4354 5904 3968 4905 1558 * 6131 21 26 * 5812 * * * * 8206 0 0 I 22 5446 * * 5707 6696 * 6226 4326 3600 5393 6410 4999 4736 4132 5685 3774 1176 3340 7073 * 22 42 6777 5662 1000 1000 0 * 8226 1000 1714 L 23 * * * * 2794 * * 3891 * 654 4969 * * * * * * 3523 * 4882 23 0 * * * * 0 * 8308 0 1724 N 24 4242 * 7202 4926 * 5543 * 4305 5119 3247 5699 4702 * 5050 4451 2570 1985 2769 * * 24 27 6728 6761 2807 222 * * 8239 1000 0 C 25 4963 88 * * * * * * * * * * * * * * * 6165 * 6280 25 0 * * * * 0 * 8222 0 1000 Y 26 5069 * 5671 4224 3934 * 2924 5734 5401 2422 6677 5164 * 3612 3664 3156 3883 4237 5932 5430 26 0 * * * * * * 8220 0 0 V 27 1459 6750 * * * * * 2449 * 4684 * * * * * 3463 4867 1836 * * 27 0 * * * * * * 8220 0 0 T 28 4400 * 4448 3522 * 4433 6767 5532 3713 4536 6750 4453 * 5862 3494 2033 2727 5020 6628 5258 28 0 * * * * * * 8220 0 0 Q 29 * * 3205 4655 * 1082 5071 * 4002 * * 2776 4968 5779 5085 4016 * * * * 29 50 * 4876 * * * * 8220 0 0 F 30 4593 * 5692 * 877 4117 * 4942 * 4800 6278 * * * * 3840 6644 5288 5179 3027 30 47 * 4971 * * 914 1091 8192 0 2797 H 31 4038 * * * 2580 * 3614 6754 3823 5003 5628 4181 5624 6528 5678 3254 * 6303 * 1575 31 32 5498 * 668 1433 1573 591 8191 1644 3183 P 32 6391 * 6136 6254 * * * * * 5410 * 6662 289 5464 6352 4326 6059 6814 * * 32 39 6427 6045 0 * 0 * 8206 1000 2547 P 33 2804 * 3522 3799 * 4687 7034 * 2585 5157 * 4018 2439 4183 4423 4204 5976 * 5016 6964 33 0 * * * * 966 1034 8226 0 1671 H 34 3203 * 2558 3419 6781 4961 4827 3869 6188 5549 * 3473 3143 4849 5567 3902 4379 3982 6529 * 34 95 * 3969 * * 0 * 8225 0 1000 I 35 4799 * * 6379 5013 * * 1599 5559 2357 * 6299 4458 6451 4977 6364 4955 2128 * * 35 0 * * * * 0 * 8181 0 3655 E 36 3915 * 4475 2779 7102 6644 4845 4625 3479 5076 5386 3190 * 4223 4263 2914 3555 4980 6003 5209 36 11 * 7102 * * * * 8220 0 0 I 37 * * * * 3426 * 6580 2149 * 2460 6736 * * * * * 5114 1263 5483 6374 37 0 * * * * 0 * 8216 0 1000 Q 38 6356 * 6608 4481 4709 5404 6622 4561 3531 5302 5886 6846 * 3134 3702 2530 2160 6788 3750 6654 38 0 * * * * * * 8220 0 0 M 39 * * * * 4607 * * 4564 * 4664 5834 * * 6409 * * * * 288 5109 39 26 6796 6849 1000 1000 * * 8220 1000 0 L 40 * * * 4963 3072 6443 6565 3877 3156 2337 4577 4278 * 3916 3374 5466 4220 6528 5262 3653 40 25 5876 * 1839 473 * 0 8222 1627 1000 K 41 6045 4888 5645 3249 * 4982 4877 5770 1989 4447 5967 4263 * 4668 2174 4533 6776 3991 * * 41 71 4672 6818 2321 322 * 0 8222 2955 1000 N 42 * * 1939 3614 * 2964 6526 6113 4088 * * 1543 * * 6299 4426 5379 * * 5735 42 31 6282 6948 3459 138 949 1053 8218 1000 1692 G 43 4333 * 3479 4311 6158 1036 * * 5348 5768 * 3936 * 5728 5101 3577 5290 5016 * 6373 43 14 * 6696 * * 1033 968 8222 0 1711 K 44 4515 * 3940 2785 * 3550 5754 4765 3153 4482 6151 3687 6911 3109 4089 4864 3781 3914 * * 44 15 6641 * 3000 193 0 * 8338 1000 1753 K 45 5114 * 4206 2331 5638 5288 4776 4353 3739 3635 * 3663 2992 6966 5308 3871 4085 4159 * 6554 45 41 5620 6970 2226 347 * * 8351 1700 0 I 46 6659 * 5606 4627 6627 * 6665 3016 4678 1829 4927 6617 * 4131 3736 3997 4679 2554 6786 6828 46 75 5004 5671 1038 963 0 * 8345 2268 1000 P 47 6650 * 3277 3959 * 5464 5011 4966 3866 5513 6774 5460 2333 3624 4152 2909 3037 6534 * 6263 47 104 3850 * 1433 667 870 1143 8328 3766 1622 K 48 3533 * 3414 3059 * 2656 4692 6379 4982 4339 * 3739 4073 3727 5246 2840 4896 * * * 48 46 4994 * 571 1613 * 0 8337 2529 1000 V 49 3646 * 3510 3541 * 2872 7045 3972 4160 4713 * 5403 4800 4278 4759 3210 4552 2885 * 6596 49 36 5978 6886 586 1582 * 0 8337 1639 1000 E 50 3988 6509 5139 3588 6824 5902 4561 4544 5188 5217 5514 4898 5109 3694 3327 2358 3233 3993 6942 5990 50 31 5560 * 0 * 876 1136 8331 1896 1745 M 51 5164 * 4546 4111 3551 6837 5096 4391 5056 4084 4479 3988 4318 3776 4247 3302 3136 4817 * 3698 51 27 5773 * 672 1425 * 0 8337 1738 1000 S 52 6099 * 5584 4327 3990 4423 4474 5326 5731 5226 * 3728 3416 4212 6512 3004 2089 3707 * 5688 52 12 * 6899 * * 0 * 8337 0 1000 D 53 6586 * 3700 3171 5163 3374 5339 4738 4106 6664 * 3482 4594 3223 4508 3023 3777 4322 * 5700 53 57 4684 * 2223 348 0 * 8350 2249 1000 M 54 5477 * 6590 5367 4503 * 4474 3503 5649 3473 6787 5590 2382 4207 4947 3937 3404 2914 6933 4414 54 52 5205 6942 0 * * * 8351 2364 0 S 55 4888 * 5322 3911 5108 5959 5597 4082 4707 2890 5453 4626 5939 3979 3109 3199 3454 3355 * 5642 55 60 5364 5947 1743 512 0 * 8348 2453 1000 F 56 3842 6825 4918 3420 5260 * * 4124 4113 4336 5547 6834 1854 3354 3933 4317 5898 5430 * 4508 56 24 5926 * 1304 749 0 * 8348 1665 1726 S 57 3321 * 3411 4562 * 3309 4414 * 4093 5122 5557 2431 5446 4212 4938 3045 3563 7248 * * 57 0 * * * * * * 8351 0 0 K 58 3264 6492 3158 3622 6247 2380 4799 * 3883 5489 * 4504 3907 5092 5358 3007 4318 6835 * 6295 58 48 5815 6089 1924 441 * * 8351 1702 0 D 59 5108 * 1235 4586 * 3865 * * 3834 5084 6610 2893 4336 5573 5682 3736 5238 * * * 59 57 * 4678 * * * 0 8347 0 1706 W 60 6667 * 4172 3889 * 1187 6435 5920 4363 4535 5077 4011 * 5842 5416 3602 5360 5920 4536 6747 60 22 6038 * 2777 228 1490 635 8171 1716 3459 S 61 5928 * 5836 4960 5707 4686 * * 6561 2782 6606 5263 5435 5566 3670 2855 1301 6918 * 6896 61 69 5828 5116 1288 760 1911 446 8180 1741 2676 F 62 * * * 5686 1430 6198 6256 6605 * 5268 * * 6531 * 6594 4663 * * 5954 1090 62 52 5718 5906 1420 675 1464 650 8188 1807 3235 Y 63 * 5542 4607 6310 4583 * 4450 6839 5009 * 4641 3048 5029 2954 3849 2021 3594 6079 * 3976 63 34 6542 6310 1585 585 1759 505 8177 1000 3378 I 64 2734 6149 * 6826 6493 * * 3240 4203 2985 4236 6659 * 4706 4322 4514 3283 2233 6606 6889 64 0 * * * * 318 2338 8167 0 3203 L 65 6728 6504 * 5638 3262 6588 5799 4583 6784 2687 5239 * * 4898 3877 2532 2107 5580 4719 5118 65 15 * 6621 * * * 0 8217 0 1000 A 66 3927 6579 5022 4798 * * 4495 4789 4599 * * 5244 * 6985 5608 748 5148 4386 6797 * 66 40 5193 * 1186 835 1039 962 8202 2316 1632 H 67 4222 * 5376 5026 4533 6641 4782 3185 5103 4961 * * * 3589 4329 2622 2550 4464 4279 3876 67 39 5776 6891 1261 779 0 * 8211 1583 1000 T 68 5720 5719 * * 7016 5881 5328 3529 * 785 * * * 6058 4330 6779 5241 2897 * 6530 68 12 6954 * 1000 1000 0 * 8234 1000 1000 E 69 5051 * 4358 3134 * 5577 5205 6621 3817 5772 5256 3417 5030 4927 3002 4864 2144 5178 5739 4487 69 27 6726 6812 0 * * * 8226 1000 0 F 70 * * * * 3479 6666 5744 2013 * 2041 6609 * * * 6764 5042 4891 1859 * 4972 70 31 6289 6913 882 1129 * 0 8223 1698 1000 T 71 5215 * 3835 5233 6552 5813 * 5243 3460 4683 * 4393 3242 4133 5758 3291 1843 4078 6802 6174 71 60 4608 * 1952 431 978 1023 8222 2985 1646 P 72 2499 6586 6532 4289 * 6666 6295 7121 4129 3437 * 7449 1753 6805 3216 4042 4843 5236 5038 * 72 166 3202 * 1863 464 0 * 8226 4809 1000 T 73 3273 * 4629 2777 * 3552 6920 * 3950 * 4293 4099 * 4048 4695 2540 2813 5543 7006 * 73 91 4038 * 1617 569 * * 8226 3567 0 E 74 5085 6129 2068 2530 * * 4321 4939 4698 4076 * 5223 4475 4280 3553 3338 5526 5740 * 5930 74 95 4222 6589 967 1033 * * 8226 3150 0 T 75 3725 7428 3240 3172 * 2210 5805 * 4073 5715 6778 4177 * 4744 4691 3300 4299 5947 3637 * 75 68 4440 * 1518 619 * 0 8212 3015 1000 D 76 3390 * 2048 3391 6536 2546 4480 * 4690 * 3905 3430 * 4909 6120 4544 5113 6603 * 6306 76 185 3147 7022 1428 670 0 * 8212 4866 1000 T 77 4558 * 6100 2485 * 5324 5963 3681 3743 4722 * 3802 * 4286 3424 4134 3120 2788 * * 77 125 3591 * 1352 717 0 * 8226 3900 1000 Y 78 * 6122 * * 2335 5684 5013 3251 * 3648 6543 * 6853 * 5957 * * 3783 * 1171 78 25 5850 * 845 1174 * * 8227 1590 0 A 79 4472 * 5005 4065 * 5678 6502 3944 3934 * 6559 * * 4645 3825 2297 1720 4404 6784 5745 79 28 5705 * 1585 585 * * 8227 1488 0 C 80 * 69 * * * * * 6274 * 6122 * * * * * * 5684 * * * 80 0 * * * * * * 8227 0 0 R 81 6526 * * 3049 6309 * 4435 4339 4874 4049 4464 4428 * 3231 2112 4871 4303 3006 5779 6885 81 12 6965 * 3000 193 * * 8181 1000 0 V 82 2341 * * * * 6079 * 3494 * 6566 6469 * * * * * 6864 581 * * 82 0 * * * * * * 8274 0 0 K 83 4483 * 5102 2395 5561 5743 6507 6548 2896 6652 4904 5501 * 2773 3842 3285 3123 5584 5613 * 83 60 4626 * 1195 828 * * 8251 2398 0 H 84 * * * 6706 5784 6194 455 6642 * * * 3634 6772 5166 5844 6258 * 5695 * 4266 84 40 6378 6035 1000 1000 * * 8211 1000 0 D 85 4115 6409 3542 2267 * 4728 * 5422 3398 6200 6223 5391 3765 4067 3677 3851 3788 5506 5155 5214 85 48 5456 6653 2568 267 0 * 8079 1650 1000 S 86 2291 * 5020 6417 * 2266 * 5721 6107 6553 * 6154 6917 5416 5983 1785 2903 5999 * * 86 0 * * * * * 0 8041 0 1000 M 87 4381 * 6384 * 5178 * * 5821 * 649 5398 6391 * 5262 5942 3622 4504 4212 * * 87 29 5631 * 0 * 0 * 7842 1235 1000 A 88 3839 * 4287 3672 * 4053 5013 * 2967 5463 * 5477 3595 3410 4647 2585 2832 6346 * * 88 34 6512 6350 2807 222 * * 7837 1000 0 E 89 3922 * 6058 1902 4693 5826 5251 6070 4659 5951 * 4598 6264 2294 5276 2823 4529 5079 * * 89 0 * * * * * 0 7716 0 1000 P 90 5455 * 4785 5140 * * * 5699 4114 * * 4250 811 4500 * 3524 3608 * * * 90 0 * * * * 0 * 7647 0 1000 K 91 5165 * 5297 4770 * * * 2601 3648 1592 4074 * 6220 4582 * * 4352 2555 * * 91 82 5208 5132 0 * * * 7659 1117 0 T 92 4996 * 4230 3935 * * * 2817 4321 4206 * 5830 * * 2630 3075 2209 3479 * * 92 0 * * * * * 0 7504 0 1292 V 93 3041 * * 4823 4340 5696 * 4568 2389 3571 * * * 4865 2920 * 3220 2446 * * 93 45 5018 * 2000 415 0 * 7422 1000 1292 Y 94 4560 * 5765 3810 4304 * 3272 * 4709 5393 * 3730 5635 5384 4706 3832 1931 3808 * 3473 94 0 * * * * * * 7147 0 0 W 95 * * * * 2698 * * 4622 * 5014 * * * * 4715 * * * 891 2343 95 60 4621 * 2322 322 * * 6545 1000 0 D 96 * * 2058 1897 * * * * 2901 * * 4481 * * * 3875 2922 3149 * * 96 0 * * * * * * 6170 0 0 R 97 * * * 3154 * * * * 4439 * * * 1260 4400 1836 * * 3373 * * 97 0 * * * * * * 5756 0 0 D 98 * * 1601 1216 * * 3731 * * * * 3600 * * 3605 * * * * * 98 0 * * * * * * 5165 0 0 M 99 * * * * * * * 2346 * 2408 1258 * * * * * * 2345 * * 99 0 * * 0 * * * 3403 0 0 //