HHsearch 1.5 NAME c1vx7b_ FAM FILE c1vx7b_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1vx7b_.a3m DATE Sat Jul 19 11:45:26 2014 LENG 95 match states, 95 columns in multiple alignment FILT 36 out of 40 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.8 EVD 0.4071 -0.6634 SEQ >ss_dssp CCCCSSSCCBSCSSSTTBSCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHC >sa_dssp EEDCEEEEBDEEEEDEBCCEEEEDEEEEEEEEEEEEDDEEEDCDECCEDABECBDEEEEEBCEEABECADEEDDDDEEADDCCDDADEBBDEDEE >ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC >ss_conf 98787776564021101684025477536899999999995468899999999960774045699999999607238999999999999998509 >Consensus xxxsxxxpxtGiavGlnkGhxxtkrxxkrxxxvrxiIrEvxGxaPYErRxxELlKvgxxsxxKRAlKfaKkRLGthxRaKxKrexlxxvxxxxRk >c1vx7b_ GRKSTIKPATGIAVGFNSGHVVTKRNSKRKELIKDVVREITGFSPYEKRIIELIKIGTSASTKRSLKYAKKKLGTHKRGKAKREEIQKVVILQRR >UniRef50_C6H8T6(111-214:217) 60S ribosomal protein L36 n=2 Tax=Saccharomyceta RepID=C6H8T6_AJECH E=2e-11 s/c=0.68 id=47% cov=95% ---STIEMAkerSGIAVGLNKGHKTTANTtktrisrtkghlSRRTKFVRDIVKEVAGLAPYERRVVELLR---NAQDKRARKLAKKRLGTFGRAKRKVDE MQGVIAEAKR >UniRef50_Q4FWS9(2-97:105) 60S ribosomal protein L36, putative n=13 Tax=Trypanosomatidae RepID=Q4FWS9_LEIMA E=8e-09 s/c=0.64 id=41% cov=89% ---SAPTPRTGIIAGFNKGHVTTRRprqpspndrlavPHKHLRAVKAIIADLVGLSPLEKRVQEFLRVGKE---KRALKYCKKRLGDFTAAKKKRAKMEE AL----- >UniRef50_P52866(5-95:106) 60S ribosomal protein L36 n=17 Tax=Eukaryota RepID=RL36_DAUCA E=6e-16 s/c=0.94 id=47% cov=83% ------QPNTGLFVGLNKGHIVTKKElaprpsdrkgktSKRTHFVRNLIREVAGFXPYEKRITELLKVGKD---KRALKVRQEKVGHSQESKeEERGDVQ -------- >UniRef50_B7FTL3(3-95:108) 60S ribosomal protein L36 n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FTL3_PHATR E=6e-13 s/c=0.81 id=48% cov=86% --------RTGYAKGANSGHVTEQRDlkpkpssrkgklGKRTALTRAIAREVVGLAPYERRILDMIKTGGASADKRIYKFAKRRLGSHKRALQKREDIKA V------ >UniRef50_A8BYA6(23-84:90) Ribosomal protein L36-1 n=2 Tax=Giardia intestinalis RepID=A8BYA6_GIALA E=7e-07 s/c=0.89 id=40% cov=65% -----------------------RKTKPHQEFVKSIIQECTGMAPYEMHIIELLRMNKD---RHALRYAKKRLGNIKRAKAKRDQLS-------- >UniRef50_UPI00001D103E(28-91:102) PREDICTED: similar to ribosomal protein L36 n=2 Tax=Rattus norvegicus RepID=UPI00001D103E E=2e-06 s/c=0.84 id=35% cov=68% ----------------------TRSLTKHTKS-QDTIRKVYSFTSYEQRTMELLKV---SKEKLALKFIKEKVGTHMRTKRKCEHLSNFL----- >UniRef50_A0DT55(3-104:110) Chromosome undetermined scaffold_62, whole genome shotgun sequence n=5 Tax=Eukaryota RepID=A0DT55_PARTE E=4e-11 s/c=0.68 id=43% cov=93% --------RTGIAVGLNRGFITSSLTkkqlrrrpsqrkgtlGKRVLSVRKVIQEVAGLSPYEKRIIELFKTNQPKDLKKAGKLAAKRLGTNRRGKRKIEL VQNLYRAMRK >UniRef50_A2DIW6(20-86:93) Ribosomal protein L36e, putative n=4 Tax=Trichomonas vaginalis RepID=A2DIW6_TRIVA E=3e-08 s/c=0.89 id=34% cov=68% --------------------------GKRVNFARKIVHELVGWQPYERHTMDLIKIERRRA---ARQFLKKRLGTHRRAMKKLNTLEEVVQEE-- >UniRef50_D2VJ88(3-94:110) Ribosomal protein L36E n=1 Tax=Naegleria gruberi RepID=D2VJ88_NAEGR E=1e-05 s/c=0.56 id=39% cov=88% --------ATGISVGRigRKGFPTTKRakvtktqKPSKHRVVKDIVEEAIGVAPYEARLVDLVEV----SEKRALRFAKRRLGDLTRAKKKIRAIEDLKR RIRK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 R 2 * * * * * * * * * * * * * * 0 * * * * * 2 0 * * * * * * 1000 0 0 K 3 * * * * * * * * 0 * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 S 4 * * * * * * * * * * * * * * * 0 * * * * 4 0 * * * * * * 1731 0 0 T 5 1564 * * * * * * * * * * * * * * * 595 * * * 5 0 * * * * * * 1731 0 0 I 6 * * * * * * * 595 * * * * 1564 * * * * * * * 6 0 * * * * * * 1731 0 0 K 7 * * * 2279 * * * * 2205 * * * * 1486 * * 2185 * * * 7 0 * * * * * * 1950 0 0 P 8 3171 * * * * * * * * * 2946 * 398 * * * * * * * 8 0 * * * * * * 2208 0 0 A 9 1729 * * * * * * * 2551 * * 3771 * * 1138 * * * * * 9 62 4567 * 1585 585 * * 2765 1000 0 T 10 * * * * * * * * * * * * 4597 * 3946 1876 686 * * * 10 0 * * * * * * 2765 0 0 G 11 * * * * * 0 * * * * * * * * * * * * * * 11 0 * * * * * * 2771 0 0 I 12 * * * * * * * 906 * 1949 2786 * * * * * * * * 4004 12 0 * * * * * * 2763 0 0 A 13 740 * * * 3536 * * 3442 * * * * * * * 3013 * 3903 * 4943 13 0 * * * * * * 2763 0 0 V 14 3305 * * * * * * 3883 3362 * * * * * * * * 526 4675 * 14 0 * * * * * * 2763 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 2763 0 0 F 16 4004 * * * 2895 * * 3240 * 788 * 4943 * * 3544 * * * * * 16 129 3544 * 1000 1000 * * 2763 1069 0 N 17 * * 4714 * * 5123 * * 3606 * * 417 * * 3544 5925 * * * * 17 0 * * * * * * 2763 0 0 S 18 * * * * * * * * 491 * * * * * 2445 3255 * * * * 18 0 * * * * * * 2763 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 2763 0 0 H 20 * * * * 2469 * 581 * 4003 * * * * * * * * * * 3495 20 0 * * * * * * 2763 0 0 V 21 3776 * * * * * * 2061 2220 * * * 2389 * * * 4505 2073 * * 21 73 4334 * 2322 322 * * 2763 1000 0 V 22 * * * * * * * * * 3801 * * * * * * 933 1306 * * 22 0 * * * * * * 2763 0 0 T 23 3642 * * 4033 * * * * * * * 3161 * * 4771 3063 759 * * * 23 66 4488 * 3000 193 * * 2825 1000 0 K 24 5286 * * * * * 4827 * 1173 4771 * * 4983 4054 1986 3761 * 4601 * * 24 179 3097 * 3762 110 * * 2877 1622 0 R 25 * * * * * * * 5282 2998 3799 5137 4609 * * 696 3465 * * * * 25 266 2572 * 3292 155 * * 2922 1920 0 N 26 * * 4654 2782 * * 4048 * 3330 2698 * 4854 3440 2842 * 5322 2254 * * * 26 648 1467 * 3388 145 * * 2887 2355 0 S 27 * * 5171 * * 2500 4351 * 4314 * * * 3461 * * 1638 1816 * * * 27 0 * * * * * * 2968 0 0 K 28 * * * 5423 * * * * 466 * * 5287 3844 4796 4114 3966 * * * * 28 39 5219 * 3000 193 * * 2968 1000 0 R 29 * * * * * * 1809 * 3461 * * * * 5025 754 * * * * * 29 41 5171 * 3322 152 * * 2968 1000 0 K 30 4445 * * * * * 3966 * 2637 3870 * 4204 * 4314 5816 7171 1792 2042 * * 30 26 5816 * 2807 222 * * 2968 1000 0 E 31 3446 * * 3611 * 4037 2889 5911 1651 4834 * 4292 * 5688 2680 5709 6083 * * * 31 0 * * * * * * 2968 0 0 L 32 3693 * * * 1175 * * * * 2740 4193 * * * * 3410 4076 3035 * * 32 144 4796 4082 2807 222 * * 2968 1000 0 I 33 2947 * * * * * * 2913 * * 4208 * * * * * 4762 629 * * 33 0 * * * * 0 * 2902 0 1000 K 34 * * * * * * * * 2168 * * 4695 * 4082 678 5183 * * 5207 * 34 0 * * * * * * 2968 0 0 D 35 3557 * 1586 3173 * 5207 * * 2850 * * 3846 * * * 2084 * * * * 35 0 * * * * * * 2968 0 0 V 36 * * * * * * * 1557 * 2009 5340 * * * * * 4082 1609 * * 36 0 * * * * * * 2968 0 0 V 37 3993 * * * * * * 723 * * * 5207 * * * * * 1717 * * 37 0 * * * * * * 2968 0 0 R 38 4351 * * 3966 * * 4292 * 4152 * * 5688 * 3043 710 * 5171 * * * 38 0 * * * * * * 2968 0 0 E 39 * * 3758 206 * * * * 4082 * * * * * * * * * * * 39 0 * * * * * * 2968 0 0 I 40 3285 4314 * * * * * 3548 * 3321 5207 * * * * * * 656 * * 40 0 * * * * * * 2968 0 0 T 41 1646 2361 * * * * * 3966 * * * * * * * 5143 3249 2125 * 4082 41 0 * * * * * * 2968 0 0 G 42 * * * * * 88 * * * * * * * * * 4082 * * * * 42 0 * * * * * * 2968 0 0 F 43 * * * * 1086 * 4801 * * 2109 3902 * * * * 5327 * 3966 4292 4198 43 0 * * * * * * 2968 0 0 S 44 777 * * * * * * * * * 5057 * * 4289 * 1864 4044 * * * 44 0 * * * * * * 2961 0 0 P 45 4690 * * * * * * * * * * * 189 * * 3576 * * * * 45 0 * * * * * * 2973 0 0 Y 46 * * * * 4497 * * * * 4341 * * * * * * * 5121 * 188 46 0 * * * * * * 3007 0 0 E 47 * * * 42 * * * * * * * * * 5121 * * * * * * 47 0 * * * * * * 3007 0 0 K 48 3955 * * * * * * * 1482 * 4365 * * 4100 1166 * * * 5313 * 48 0 * * * * * * 3007 0 0 R 49 * * * * * * 2357 * * * * * * * 313 * * * * * 49 0 * * * * * * 3007 0 0 I 50 2760 * * * * 5969 * 1695 * 2796 3065 * * * * * 2950 2892 * * 50 0 * * * * * * 3007 0 0 I 51 * * * * * * * 2043 * 3380 1403 * * 4341 * 5164 3041 3569 * * 51 0 * * * * * * 3007 0 0 E 52 * * 2030 405 * * * * * * * * * * * * * * * * 52 0 * * * * * * 3007 0 0 L 53 * * * * 4341 * * * * 174 3960 * * * * * * * * * 53 0 * * * * * * 3007 0 0 I 54 * * * * 3860 * * 1638 * 875 * * * * * * * 3955 * * 54 0 * * * * * * 3007 0 0 K 55 * * * 3955 * * * * 526 * * * * * 2052 * * * * * 55 181 * 3082 * * * * 3007 0 0 I 56 5131 * * * * * * 2456 * * 4277 5156 * * 4657 4972 2437 1141 * * 56 452 * 1896 * * * 0 3067 0 1752 G 57 * * * 3677 * 427 * * * * * 2492 * * * * * * * * 57 0 * * * * * 0 2836 0 2140 T 58 * * * * * 3310 * * 1349 3346 * * * 3258 3074 2841 4465 * * * 58 0 * * * * 1339 726 2836 0 2140 S 59 2374 * 1406 3994 * * * * * * * 2487 3549 * 3926 4740 * * * * 59 837 * 1184 * * 422 1979 2931 0 1632 A 60 2332 * 4296 * * * * * 3134 * * * * * 3672 841 * * * * 60 0 * * * * 2525 275 2718 0 2474 S 61 2234 * 3232 * * 4612 * * 1557 * * * * 3947 * 2393 4479 * * * 61 107 * 3812 * * * 0 2859 0 2397 T 62 * * 1528 1573 3394 * * * * 3105 * * * 4329 * * 4154 * * * 62 0 * * * * 242 2693 2756 0 2482 K 63 * * * * * * * * 76 * * * * * 4276 * * * * * 63 0 * * * * * 0 3003 0 1000 R 64 * * * * * * 4276 * 3106 3944 * * * * 382 * * * * * 64 0 * * * * 0 * 3003 0 1000 S 65 285 5072 * * * * * 3925 * * * * * * * 5021 4237 * * * 65 0 * * * * * * 3087 0 0 L 66 * * * * * 3818 * * * 528 * * * * 2787 * * 5324 * 3925 66 0 * * * * * * 3087 0 0 K 67 * * * * * * * * 321 * * * * 4188 2792 * * * * * 67 0 * * * * * * 3087 0 0 Y 68 * * * * 1025 * * * * 2487 * * * * * * * 2883 * 2361 68 0 * * * * * * 3087 0 0 A 69 784 4315 * * * 5232 * 2628 * 3125 * * * * 3923 * * * * * 69 0 * * * * * * 3087 0 0 K 70 3818 * * * * * * * 212 * * * * 3923 * * * * * * 70 0 * * * * * * 3087 0 0 K 71 * * * 2970 * * * * 759 * * * * * 1830 * * * * * 71 0 * * * * * * 3087 0 0 K 72 * * * * * * 4714 * 2217 * * * * * 421 * * * * * 72 0 * * * * * * 3087 0 0 L 73 * * * * * * * 3492 * 431 * * * * * * * 2562 * * 73 0 * * * * * * 3087 0 0 G 74 * * * * * 0 * * * * * * * * * * * * * * 74 0 * * * * * * 3093 0 0 T 75 * * 3078 * * 4103 3908 * * * * 4349 * * * 3476 695 * * * 75 0 * * * * * * 3093 0 0 H 76 * * * * 3386 * 875 3263 * 3094 * 3812 4943 * * 4873 * * * * 76 0 * * * * * * 3093 0 0 K 77 * * * * * 4424 * 3818 1770 4450 4005 * * 3392 2406 * 2803 4212 * * 77 0 * * * * * * 3093 0 0 R 78 3659 * * 3908 * * * * * * * * * * 227 * * * * * 78 0 * * * * * * 3093 0 0 G 79 564 * * * * 2362 * * * * * * * * * 3908 4005 * * * 79 0 * * * * * * 3093 0 0 K 80 * * * * * * * * 251 3258 4184 * * * * * * * * * 80 50 4873 * 0 * * * 3093 1000 0 A 81 2321 * * 3908 * 5670 * * 1595 * * * * 4785 1658 * 5077 * * * 81 0 * * * * * * 3093 0 0 K 82 * * * 2964 * * * * 198 * * * * * * * * * * * 82 49 * 4918 * * * * 3093 0 0 R 83 * 3963 * * * * * 2778 4875 4197 5131 5020 * * 829 * 5087 4333 * * 83 0 * * * * * 0 3123 0 1000 E 84 4283 * 2121 921 * 3597 * * * * * 4197 * * 4230 * * * * * 84 0 * * * * * 0 3123 0 1000 E 85 4194 * 2730 1278 * * 3939 4965 4234 3770 4999 * * 3815 * * 4153 * * * 85 0 * * * * 0 * 3107 0 1000 I 86 * * * * * * * 2057 * 1361 2024 * * * * * * 3007 * * 86 0 * * * * * * 3118 0 0 Q 87 3889 * * 2776 * 5256 5155 * 3885 5032 5022 5261 * 2000 4924 2050 4247 * * * 87 0 * * * * * * 3118 0 0 K 88 2820 * 4523 2520 * 5296 * * 4824 * * 1347 * * 3725 4451 3936 * * * 88 0 * * * * * * 2988 0 0 V 89 2660 * 4911 * 3787 * * 2528 * 2643 * * * * * * 5519 1393 * * 89 0 * * * * * * 2988 0 0 V 90 * * * 4665 * * * 2371 4474 1450 4937 * * * * * * 2394 * 2906 90 0 * * * * * * 2955 0 0 I 91 2324 * 4406 3358 * * * 4476 * * 4470 * * 2444 1778 4192 4827 * * * 91 0 * * * * * * 2869 0 0 L 92 1615 * * 2734 * * 5049 * 2652 2890 * * * 3656 4220 3921 * * * * 92 0 * * * * * * 2869 0 0 Q 93 4707 * * 3804 * * * 3227 3507 4773 1964 * * 2381 4439 2605 * * * * 93 0 * * * * * * 2833 0 0 R 94 * * * * * * * * 3473 * * * * * 223 4240 * * * * 94 0 * * * * * * 2769 0 0 R 95 * * * * * * * * 755 * * * * * 1296 * * * * * 95 0 * * 0 * * * 2677 0 0 //