HHsearch 1.5 NAME c1vx7Y_ FAM FILE c1vx7Y_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1vx7Y_.a3m DATE Sat Jul 19 11:49:37 2014 LENG 101 match states, 101 columns in multiple alignment FILT 105 out of 206 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4542 1.0353 SEQ >ss_dssp CCCCSSCSCCCCSCCCSCCHHHHEEEECCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHH C >sa_dssp EEEEEEEEEEEEDEDEEDDDEDBBDDDCEDEEBDEDBEEDCBBBABACEEAEDEDADEBAEECCEADCEEBDCDECEECCBCACADACEECEAEEBCEED E >ss_pred CCCCCCCCCCCCCCCCCCCCHHEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHC C >ss_conf 9978786236766767688011110152289999855227849999867689899999999997772468898976998678999967997289988522 9 >Consensus xrxpkxxrxxxxxxxxxmdxyxvIkxPixTEKsxxxxexxNxyxFxVxxxanKxeIKxAVExlFxVkVxxVNTxxxxxkxKKAxVxLxxxxxAxdiaxki G >c1vx7Y_ ARNPKCPRIVKSCHSKTLDKYGLIKYPLTSEKAMKKIEEINTLVFMCDKRANKKNIKKSVKNLFGIECDKVNVLNTLNGDKKAYVRLSGEHDALEVANKI G >UniRef50_D1RAR5(5-82:111) 50S ribosomal protein L23 n=2 Tax=Parachlamydiaceae RepID=D1RAR5_9CHLA E=9e-05 s/c=0.62 id=33% cov=65% ------------------DPYHVVKGPHVTEKSVMLQGLKNatsnrslaacespKYVFIVDRKANKQEIARAVEEIYSEKNIKVVAVNTINVKPKA---- -------------- >UniRef50_B1AIM2(1-65:105) 50S ribosomal protein L23 n=15 Tax=Ureaplasma RepID=RL23_UREP2 E=2e-08 s/c=0.92 id=32% cov=59% -----------------MELTRVILHPYTTEKTYsiRNKSEHETLTFIVDKNANKYQIREAFIAIFGLKPLKIRTTNR---------------------- --- >UniRef50_P19167(10-83:100) 50S ribosomal protein L23, chloroplastic n=1 Tax=Euglena gracilis RepID=RK23_EUGGR E=5e-05 s/c=0.66 id=29% cov=65% --------------------YDQFKYGILTDKTNKLL-KNNVYTFDVDIQMSKRQFKDLIETAFSVKITSVNSyvksskyyrSNNFEGMKKYYKR----- ---------- >UniRef50_D2V0N0(60-161:163) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V0N0_NAEGR E=8e-17 s/c=0.87 id=32% cov=100% AKKPKYVRKSIPA-TNDMDTYQILQYPptLQNPKVTKAIEDNNTVAFVVDLKSNKKSIKKAFEELSKVKVQSIRTQITAKGKKLAWIKLPSNVEAIDVTS QLG >UniRef50_Q85FW1(4-71:74) 50S ribosomal protein L23 n=1 Tax=Cyanidioschyzon merolae RepID=Q85FW1_CYAME E=3e-08 s/c=0.88 id=19% cov=68% --------------------------PILTDKSTRLME-MRQYTFQVSPKMRKPDLRRYLEQRFQVKVLAV----RKSRPNRMIVRLAESIDLLAYASE- - >UniRef50_Q0BUP8(3-114:115) 50S ribosomal protein L23 n=156 Tax=Bacteria RepID=RL23_GRABC E=6e-18 s/c=0.82 id=31% cov=96% --SPQKTSLAARRRAERMSreaMYEVIRSPLITEKAT-LLSERSQVVFRVAIDATKPEIKAAVEGLFGVKVIGVNTLVNKGKTkrfrgrpgqrsdvKKAY VQLVAG-QAIDLTAKL- >UniRef50_Q8D210(3-70:101) 50S ribosomal protein L23 n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=RL23_WIGBR E=0.0005 s/c=0.67 id=26% cov=68% --------------NKKENIFKILTSSYSSEKSSILSEKNNTFTFKVLKNSKKSEIKSSIEKFFNVKVKKVRTVMLKGKSKK------------------ - # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 2075 0 0 R 2 * * * * * * * * 1398 * * * * * 689 * * * * * 2 0 * * * * * * 3002 0 0 N 3 2271 * * 4085 * * * * 2507 3921 * 2062 * 3913 3440 3412 * * * * 3 0 * * * * * * 3135 0 0 P 4 * * * * 3366 * * * * * * * 147 * * * * * * * 4 0 * * * * * * 3135 0 0 K 5 3510 * * * * * * * 687 3778 * * * 3524 2931 * * * * * 5 0 * * * * * * 3263 0 0 C 6 * 3780 * * 2664 * 3632 * 3524 * * 4031 * * * * * * * 887 6 0 * * * * * * 3263 0 0 P 7 4142 * * 2764 * * * * * * * * 867 * * * 2672 3459 * * 7 0 * * * * * * 3263 0 0 R 8 * * * * * * 3510 * * * * * * 4031 499 2800 * * * * 8 0 * * * * * * 3263 0 0 I 9 * * 3594 * * * * 3780 1280 2672 * 2703 * * * 4033 * * * 4031 9 0 * * * * * * 3263 0 0 V 10 1500 * * * * * * * * 3632 * * 3778 * * 1904 3837 2684 * * 10 0 * * * * * * 3263 0 0 K 11 3524 * * * * * * 2163 3780 3594 * * * * 2931 * 2490 2151 * * 11 105 3837 * 1000 1000 * * 3263 1000 0 S 12 * * * * * * * * 1423 * * * 1619 * 3524 3780 2818 * * * 12 323 4031 2842 0 * * * 3263 1000 0 C 13 3250 3582 * * * * * * 2435 * * * 1987 * 2095 * 2836 * * * 13 276 * 2523 * * 970 1030 3128 0 1564 H 14 * * * * * 3300 2604 3465 3681 3640 3195 * * * 1964 * * 3063 * * 14 0 * * * * 587 1581 2981 0 1911 S 15 3923 * * * * * * * * * * 1895 3987 4299 * 1913 2382 * * 3414 15 0 * * * * 0 * 3563 0 1000 K 16 3437 * * 4397 * * * * 1126 4154 * 2685 4270 4418 4477 * * * 4416 * 16 127 * 3570 * * * * 3846 0 0 T 17 * * 2207 * * 4534 3893 * 1947 3792 * 3276 * * 3466 4689 3200 * * * 17 257 * 2616 * * 0 * 3944 0 1419 L 18 * * * 4629 * * 5240 3888 * 1959 817 * * * * * 4626 * * * 18 0 * * * * 0 * 4405 0 1991 D 19 * * 1062 4081 * 5948 * * 3791 * * 2650 * 4733 5598 3547 3828 * * * 19 18 6298 * 1585 585 * * 4541 1000 0 K 20 3755 6109 5773 * 5835 * 2782 3948 3783 2683 5000 5323 2241 * * 3514 4218 * * 5158 20 0 * * * * * * 4552 0 0 Y 21 * 6128 4566 6371 2573 * 5272 4418 5501 5715 * 5279 * 3885 6516 6086 4055 * * 1088 21 0 * * * * * * 4661 0 0 G 22 4502 * 1790 3830 * 6110 5750 5771 2657 * * 4736 5132 3284 3955 2805 6633 * * * 22 0 * * * * * * 4700 0 0 L 23 * * * * 5819 * * 1404 6058 3244 * * * 4673 * * 6633 1203 * * 23 0 * * * * * * 4798 0 0 I 24 * * * * 5758 * * 819 * 1620 * * * * * * * 3483 * * 24 0 * * * * * * 4826 0 0 K 25 5873 * 6322 5239 * * 5979 2399 1290 3534 * * * 4576 3265 * 5407 3765 * * 25 0 * * * * * * 4860 0 0 Y 26 3563 * * 5764 4897 3950 4193 * 2531 5718 6390 * * 4488 2683 2856 5207 * * 2518 26 0 * * * * * * 4860 0 0 P 27 4301 * * * 6490 5968 6570 5709 * * * * 395 6780 * 4222 * 3846 * * 27 21 6093 * 1000 1000 * * 4873 1000 0 L 28 * * * * * * 3725 1771 * 2214 4777 * * 5679 5358 5722 * 2054 6398 3971 28 0 * * * * * * 4871 0 0 T 29 5122 * * * 5060 * 6385 2420 5637 2092 * 6931 6283 5350 6537 6457 2888 1811 * * 29 22 6056 * 0 * * * 4871 1640 0 S 30 * * * * * * * * * * * 4226 * * * 2052 503 * * * 30 0 * * * * * * 4871 0 0 E 31 * * 3610 302 6200 * * * 4834 6099 * * 6100 5944 * * 6285 * * * 31 0 * * * * * * 4871 0 0 K 32 * * * 5005 * * * * 228 6583 * * * * 5459 4263 5873 * 6298 * 32 0 * * * * * * 4871 0 0 A 33 1771 * 6751 * * 5334 * 6167 6285 7197 5985 5379 * 6337 * 1549 2177 5363 * * 33 47 6576 5549 3170 170 * * 4871 1000 0 M 34 4665 6059 5678 5530 4697 * * 4089 * 4051 2662 3842 * * * 3394 2025 3359 * 3631 34 50 6588 5383 1000 1000 0 * 4945 1000 1535 K 35 4853 * 4645 4977 5728 4252 * 4486 2174 4117 4025 3603 * 4063 2994 3872 4474 4762 5706 * 35 14 6659 * 0 * 0 * 4873 1000 1841 K 36 3460 6733 5790 4897 * 7121 6298 3820 3301 1611 3400 4505 * 3413 5310 4388 * 5443 * * 36 52 6398 5410 3322 152 * * 4871 1000 0 I 37 4614 * * * * 3976 * 2633 4565 1993 2817 6023 * 4751 3447 4010 5028 4008 * * 37 92 5421 4699 1132 879 0 * 4850 1586 1526 E 38 5913 * 2937 718 * 4826 * * * 4918 * 6523 * 5377 6464 3507 5733 6169 * 6730 38 129 6491 3743 4000 93 0 * 4850 1000 1994 E 39 4229 * 2883 2785 5086 5900 * * 1875 5127 * 3910 * 4677 4138 3569 4405 5342 * * 39 134 * 3498 * * 0 * 4940 0 2569 I 40 4970 * 4169 3239 4202 4602 4225 4696 3576 3992 4967 2495 6610 3148 5277 3780 5499 6456 * 6993 40 129 6282 3786 0 * 0 * 4946 1000 2794 N 41 * * * 5839 * 3648 6546 * 5153 * * 483 6526 * 3685 4356 * 6529 * * 41 38 6138 6429 3700 115 0 * 4902 1000 2717 T 42 6667 6422 7342 6349 * * * 5456 1646 * * * * 2245 3269 6650 2342 3381 * * 42 0 * * * * 0 * 5009 0 1000 L 43 * * * * 4339 * * 2996 * 2373 5729 * * * * * * 3571 6165 957 43 0 * * * * * * 5014 0 0 V 44 3249 5580 * 5625 7337 5781 5818 5233 7017 7196 6331 * 6345 4681 * 4600 1483 1745 * 6731 44 0 * * * * * * 5014 0 0 F 45 6676 * * * 186 * * 5326 * 4744 * * * * * * * 4625 * 6876 45 0 * * * * * * 5014 0 0 M 46 5591 * 3680 2868 6227 * 5420 2415 2852 3541 5776 5010 * 4962 3963 7356 6937 3532 6631 4074 46 0 * * * * * * 5014 0 0 C 47 4830 4713 * * * * * 5874 * 5666 * * * * * * * 168 * * 47 0 * * * * * * 5014 0 0 D 48 2732 * 1400 4196 5943 6810 4731 * 6386 5098 * 3659 4243 6212 4546 3182 * 6196 * * 48 0 * * * * * * 5014 0 0 K 49 4208 * * 6107 * 5362 6766 3974 2329 3380 4367 5204 2876 5753 2544 6539 4843 3597 * 6776 49 0 * * * * * * 5014 0 0 R 50 6703 * 2505 4330 4939 4255 4865 * 2417 7175 6238 3117 * 4589 2575 4117 4835 * 7160 6196 50 0 * * * * * * 5014 0 0 A 51 687 6156 * * 6539 * * 5666 * 3506 4201 6238 * * * 4116 4715 3819 * 6382 51 0 * * * * * * 5014 0 0 N 52 * * 5269 * * * 5829 * 5303 * * 1154 6587 * 5832 3283 1509 * * * 52 0 * * * * * * 5014 0 0 K 53 * * * * * * * * 56 * * * * * 4713 * * * * * 53 0 * * * * * * 5014 0 0 K 54 4707 * 4812 4024 5678 6480 4202 3101 3880 4041 * 5520 3036 3886 4217 4191 2908 4745 * 4509 54 0 * * * * * * 5014 0 0 N 55 5916 * 2930 1455 * 6843 6676 * 5899 5053 5208 5722 * 1823 * 4834 6126 5776 5864 6871 55 0 * * * * * * 5014 0 0 I 56 5008 * * * 5339 * * 455 * 5029 5272 * * * * * 6340 2776 * * 56 0 * * * * * * 5014 0 0 K 57 4025 * * 4969 * 6217 * * 551 * * * * * 2400 5573 * * * * 57 0 * * * * * * 5014 0 0 K 58 3320 * 4071 2780 * * 5357 7426 1978 4757 * 3891 * 3049 3096 5033 5662 6480 * 7116 58 0 * * * * * * 5014 0 0 S 59 493 * 6661 4234 6676 * * 5084 * 4136 5666 6703 * * * 5622 * * 5683 4036 59 0 * * * * * * 5014 0 0 V 60 * * * * 2898 5955 * 1825 * 4054 * * * * * * * 979 * * 60 0 * * * * * * 5014 0 0 K 61 * 6196 * 514 * * * 5600 3280 * * 5220 * 4012 6681 4651 5369 * * * 61 0 * * * * * * 5014 0 0 N 62 3934 * 4872 3000 5369 5243 5848 5085 2167 4107 5589 5275 * 3479 5733 3296 3267 6126 * 5492 62 0 * * * * * * 5014 0 0 L 63 3860 5864 * * 4649 * 5666 2154 5579 1434 4391 6676 * 6386 4335 * 4994 3847 * 5731 63 0 * * * * * * 5014 0 0 F 64 * 5955 * * 660 * * * * 5330 * * * * * 6159 * * 6657 1726 64 57 4680 * 882 1129 * * 5014 2237 0 G 65 6459 * 2556 3041 * 2285 * * 2422 * * 2294 * 4786 * 3940 * * * * 65 13 6810 * 0 * * * 5014 1000 0 I 66 6681 * * 4670 * * * 3766 5753 4596 * * * 6480 * 5902 4859 405 * * 66 0 * * * * * * 5014 0 0 E 67 5955 * 4003 3898 * 7225 5818 * 977 * * 4762 4143 4611 4823 4717 3284 6445 * * 67 0 * * * * * * 5014 0 0 C 68 * 5563 * * * * * 4300 * * * 6198 3540 * * * 5089 323 * * 68 0 * * * * * * 5014 0 0 D 69 3167 * 4208 3170 * * * 2831 2905 2972 * 5013 * 4739 5732 4077 3874 3221 * * 69 0 * * * * * * 5014 0 0 K 70 3921 * 3086 6731 * 4265 5666 * 1485 * * 3897 * 6098 3528 2320 6795 * * * 70 0 * * * * * * 5014 0 0 V 71 * 5412 * * * * * 2891 * * 5666 * * * * * 5983 311 * * 71 11 * 7007 * * * * 5014 0 0 N 72 5309 5249 * * * * 6801 * 5975 * * 568 * 5465 2894 5385 4210 6196 * * 72 10 7163 * 0 * * 0 5011 1000 1000 V 73 5279 * * * * * * 3382 * 6212 5380 * * * * 3049 737 3060 * * 73 36 5357 * 3494 134 * 0 5014 1498 1000 L 74 4749 5497 * * 5595 * 3644 3669 5855 1600 2998 6646 * 3550 5500 3981 6036 3426 * * 74 45 5830 6268 0 * * 0 5068 1538 1000 N 75 * * * * * * 5757 1751 6631 * 4101 1313 * * 3982 * 4530 3225 * * 75 90 5006 5085 3700 115 0 * 4992 1782 1557 T 76 6053 5305 * 6457 5467 * * 5688 4195 3668 4750 4030 5267 4672 2549 4309 2313 2830 * 4434 76 40 6630 5838 3807 107 573 1610 5051 1000 1892 L 77 4500 * 5016 6143 4085 6522 6206 3983 2857 4764 3625 6316 1702 5714 4039 3936 5634 6490 * 6393 77 48 4920 * 3808 107 931 1073 4998 1838 1574 N 78 6458 * 4450 5317 * 1580 6632 * 2333 6705 * 3136 4560 * 3204 5029 4462 6375 * 6334 78 80 4593 6298 3700 115 * 0 5018 1993 1000 G 79 4745 * 6572 * 6097 1654 * * 1204 * * 5436 6785 5646 3917 4822 6143 5800 * * 79 212 3430 4512 3358 148 1023 977 4928 2794 1438 D 80 5291 * 6396 3833 4946 5337 * 4916 1687 4462 5332 4529 4634 5540 4277 5508 3968 4967 3539 4039 80 186 3047 * 3731 113 0 * 4921 2996 2401 K 81 * * 6648 * * * * * 223 * * 5489 5827 * 4031 6143 5785 * * * 81 13 6851 * 3700 115 * * 5012 1000 0 K 82 * * * * * * 6143 6013 601 5828 * 6408 6458 6397 2178 6158 * 5414 * * 82 12 6917 * 3907 100 * * 5012 1000 0 A 83 422 * 5268 * * * * 5703 * 5720 4453 * * * 3667 * * 5206 * 4724 83 0 * * * * * * 4797 0 0 Y 84 * * * 5900 2200 * * 2313 * 5101 5339 * * * 5070 5784 4038 4441 5623 1576 84 0 * * * * * * 4774 0 0 V 85 * 6083 * * * 5974 * 2093 5373 * * 5698 * * * * 4925 603 * * 85 0 * * * * * * 4649 0 0 R 86 6198 * 6255 5011 * * * 5562 2074 * * * * 4118 1773 3886 2035 * * 5523 86 0 * * * * * * 4637 0 0 L 87 * * * * 3447 * * 4920 * 258 * * * * * * 5349 6129 * * 87 0 * * * * * * 4585 0 0 S 88 2046 * 4017 3643 * 4644 4908 * 2584 * 5592 * 3636 * 6532 2553 4374 4460 * * 88 0 * * * * * * 4510 0 0 G 89 2599 * 3625 2242 * 4936 5456 * 3725 * * 4608 1953 * 5246 3544 * * * * 89 0 * * * * * * 4501 0 0 E 90 5398 * 1736 2630 * 1750 * * * * * 3233 4302 * * 4928 5189 * * * 90 49 * 4899 * * * * 4488 0 0 H 91 * * 3201 5110 4761 3484 2926 4868 5228 * * 4511 * 5448 * 3597 * 3101 * 1849 91 0 * * * * 0 * 4471 0 1566 D 92 3241 * 1327 2557 * * * * 3532 * * 3982 5519 3863 * 4266 4905 * * * 92 0 * * * * * * 4316 0 0 A 93 320 * * 5145 * * * * * 4214 * * * 5076 5228 5288 4848 * * * 93 0 * * * * * * 4093 0 0 L 94 * * * 2486 5273 * * 1895 4781 1829 4032 * * 4790 4720 4297 * 5456 * * 94 0 * * * * * * 4093 0 0 E 95 4214 * 965 1427 * * * * * * * 4016 * * * * * * * * 95 0 * * * * * * 4093 0 0 V 96 4575 * * * * * * 1459 * 2923 * * * * * * * 1297 * 4172 96 0 * * * * * * 4035 0 0 A 97 612 * * * 4873 3321 * * * 3242 * * * * * * 3742 5012 * * 97 0 * * * * * * 4021 0 0 N 98 3723 * * 4497 * 5203 * * * 4534 4676 2237 * * * 1605 2377 4748 * * 98 0 * * * * * * 4021 0 0 K 99 * * * 2746 * * * * 1188 * * 4623 * 4371 1838 4529 * * * * 99 0 * * * * * * 3978 0 0 I 100 * * * * * * * 1236 * 1278 3918 * * * * * * 3368 * * 100 0 * * * * * * 3822 0 0 G 101 * * * * * 0 * * * * * * * * * * * * * * 101 0 * * 0 * * * 3599 0 0 //