HHsearch 1.5 NAME c1vx73_ FAM FILE c1vx73_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1vx73_.a3m DATE Sat Jul 19 11:51:23 2014 LENG 119 match states, 119 columns in multiple alignment FILT 105 out of 120 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.3850 -2.7463 SEQ >ss_dssp CCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCTTTSCCCCHHHHHSCCHHHHHCC CHHHHHHHHHSCCCCCCCC >sa_dssp ECECEDADEDECEDADECBDEBDEDBDDBDECEEEEDEEDCEECECBDDBBDCADDACEDDDDDDCDEEDEEEEEDCEEBDEEDEEEEDEDEDEEEEEED EDEDDEEDEEEDEEEEEEE >ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH HHHHHHHHHHCCHHHHHCC >ss_conf 9868999609999999999999999999999999548776237899999999999999699999999996199867414447887999985199999640 2999999852724666419 >Consensus xmKaxELRxlsxeELxxkLxeLKxELfxLRfqxatGxlxnxxrIkxvRkxIARilTVlxekxxxxlrxxyxxxkxxPxdlRxKxtrAxRrxLtxxqxxxx txkxxkrxxxfpxrkyAvx >c1vx73_ NVKAYELRTLKKKELLDKLDELKKELSGLRISKALGNSAKNSKIHGVRKNVARVLTVYNQKRKMELRQLYKNKKFKPYNLRKKLTKNKRLQLSPKQKAAM TLRQKKKVQNFPQRKYLVV >UniRef50_A8MDC2(5-71:115) Ribosomal protein L29 n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MDC2_CALMQ E=0.0005 s/c=0.68 id=28% cov=56% -VKLRDLKNMSREDRLRLLNELRSELIRLETQRGRGVVDNPGRMRYVRRLIARILTIEHETELNDLR--------------------------------- ------------------- >UniRef50_C4V8V7(9-119:122) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8V7_NOSCE E=3e-10 s/c=0.60 id=30% cov=92% -------REKNISELEEEIINLKNELLQLRQKKVSSTVE-PDEIKIARKNIARALRVRHEKLLEETCKKYENLPmhKIPKELRPKKTRAERRKLTKKQAS RKMPKVWKRELKNPKIFFA-- >UniRef50_Q7V535(3-68:70) 50S ribosomal protein L29 n=17 Tax=Cyanobacteria RepID=RL29_PROMM E=4e-07 s/c=0.84 id=25% cov=55% --KAAEVRKLTDADITEQIDGIRRELFDLRFQQATRQLSNTHRFKEARIKLAQLLTVQKERSRSAA---------------------------------- ------------------- >UniRef50_A9H3N9(6-69:79) 50S ribosomal protein L29 n=48 Tax=Alphaproteobacteria RepID=RL29_GLUDA E=1e-06 s/c=0.85 id=32% cov=55% --KPADLRAKTAEELEALLIDLKREQFNLRFQRATGQNEGQARVRTVRREIARVKTIASQALKKNA---------------------------------- ------------------- >UniRef50_P10142(5-109:138) 50S ribosomal protein L29 n=5 Tax=Bacteria RepID=RL29_MYCCT E=7e-09 s/c=0.59 id=22% cov=85% --KMLDLRNLSVDELIKTNESKRAELFALKFQAAVGSLEQTHRIKEIKKEIARIELALSEKRLsgentNKVIKADYNKAVEEAEKAGKEVRAKQRKFLEE QYGQQSQ----------------- >UniRef50_Q9FJP3(68-138:173) 50S ribosomal protein L29, chloroplastic n=4 Tax=rosids RepID=RK29_ARATH E=7e-05 s/c=0.68 id=34% cov=52% ----KEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKE----------------------------------- ------------------- >UniRef50_C0BGC7(1-61:62) Ribosomal protein L29 n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BGC7_9BACT E=0.0001 s/c=0.78 id=30% cov=47% -MKQSEIINLSKEDIQDKLTEYQKQLAELKMTHAISPLENPLQIQTARRVIARLKT-------------------------------------------- ------------------- >UniRef50_A2E6R2(3-121:124) Ribosomal protein L29, putative n=4 Tax=Trichomonas vaginalis RepID=A2E6R2_TRIVA E=3e-10 s/c=0.56 id=31% cov=100% HLKGKELIKKTRQELLDELAGLEKKLFELKGQKAASAAAtKLTEIKNTRRDVARVKSILMVSQRKALQEKYAKAKLVPIDLRKHQEKSLRNKLAPKYANK LTAQESRRHKCLFERKFAL- >UniRef50_B6APH8(1-62:66) Ribosomal protein L29 n=3 Tax=Leptospirillum RepID=B6APH8_9BACT E=0.0002 s/c=0.75 id=32% cov=52% -MKVSDIKSLSESEILDKIKELRRELLMLRIQRVNGRLDKPHLLKEYKKDVSRMLTILTERK-------------------------------------- ------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * 881 * * * * 1130 * * * * * * * * 1 0 * * * * * * 2562 0 0 V 2 * * * * * * * 2481 5663 2507 1009 * * * * * * 2962 * * 2 0 * * * * * * 4334 0 0 K 3 * * * 5278 * * * * 312 * * 4783 * * 3076 * 6199 * * * 3 0 * * * * * * 4506 0 0 A 4 1003 5398 * * 5489 5867 * 3366 6422 4613 4589 * 5248 6179 * 5217 4246 3127 * 6281 4 0 * * * * * * 4576 0 0 Y 5 3598 * 4367 5022 4600 6951 4891 6356 1706 6212 6423 6103 * 5430 3507 2454 4245 * * 4314 5 0 * * * * * * 4627 0 0 E 6 5744 * 1998 734 * * * * 4782 * * * * 3866 * 6624 * 6096 * * 6 0 * * * * * * 4627 0 0 L 7 6222 * * * 5566 * * 2113 * 714 5030 * 5591 * * * 6350 4310 6575 * 7 0 * * * * * * 4635 0 0 R 8 * * 6709 * * * 5560 4969 3071 6622 * * * 5504 492 5785 6179 6207 5085 * 8 0 * * * * * * 4640 0 0 T 9 2960 * 3352 2295 * 3431 * * 2461 * * 2772 6649 4661 * 4565 4674 5785 * * 9 0 * * * * * * 4640 0 0 L 10 6136 * * * 5410 * * * 1708 1344 2215 * * 5437 5386 * * * * * 10 8 7413 * 2000 415 * * 4640 1000 0 K 11 6116 * 3953 5535 * 4774 * * 3875 * * 3704 5631 * * 932 2524 * * * 11 0 * * * * * * 4647 0 0 K 12 3166 * 2620 4324 * * * 3127 2383 5253 * 4415 3998 5383 5127 5602 4667 3041 * * 12 0 * * * * * * 4647 0 0 K 13 3240 * 2371 1298 * 6722 6649 * 3368 * * 6725 5898 4162 * 4269 4512 * * * 13 0 * * * * * * 4647 0 0 E 14 5247 * 2287 800 * 7063 * * 5737 * * 6579 * 2667 * * * * * * 14 0 * * * * * * 4647 0 0 L 15 6182 * * * 6410 * * 2652 * 408 5249 * * * 5491 * * 6268 * * 15 29 * 5630 * * * * 4647 0 0 L 16 4130 * 4537 2576 * 6261 6754 5149 3113 2524 5335 4145 * 3289 4590 5188 3656 4051 * * 16 0 * * * * * 0 4616 0 1000 D 17 3014 * 3099 2160 6398 4570 * * 1893 * * 4769 * 3771 5107 5090 5134 5998 * * 17 0 * * * * * 0 4616 0 1000 K 18 6398 * 5515 2878 * * 5199 * 1443 2931 5824 6500 * 2603 4608 * 3843 * * * 18 0 * * * * 0 * 4616 0 1000 L 19 5401 7128 * 5245 * 6141 6670 3119 * 663 5093 5536 * * 6268 * * 3209 * * 19 0 * * * * * * 4647 0 0 D 20 2900 * 2967 3269 * 4863 6733 3645 2610 4611 * 4394 * 3882 5118 6362 4097 3456 * * 20 0 * * * * * * 4647 0 0 E 21 4318 * 2094 1136 * 4783 * * 4373 * * 4189 * 4073 * 4516 5785 * * * 21 0 * * * * * * 4647 0 0 L 22 4720 6553 * * 4653 * * 5187 4728 630 * * * 5656 6410 4442 4474 6348 * 3937 22 0 * * * * * * 4647 0 0 K 23 6664 * * 4865 * * 6684 * 676 * * 5761 * 4532 2243 6205 6141 * * 5668 23 0 * * * * * * 4647 0 0 K 24 2657 * 7568 3253 * 4242 6725 6671 2045 4192 * 5539 * 3692 2698 4632 4504 5332 * * 24 0 * * * * * * 4647 0 0 E 25 6182 * 3668 331 * * * * 4157 * * 6484 * 5353 * * 5597 * * * 25 0 * * * * * * 4647 0 0 L 26 5507 * * * 5661 6664 6205 * * 279 * * * 3918 * 6282 6797 * * 5449 26 0 * * * * * * 4647 0 0 S 27 3009 * * * 1006 4842 * 4753 * 3615 3415 * * * * 3666 6725 5963 5657 7274 27 18 6369 * 0 * * * 4647 1000 0 G 28 4446 * 3907 3621 * 4352 * * 3468 5282 4771 1752 * 3431 4440 3392 4065 6186 * * 28 0 * * * * * * 4647 0 0 L 29 * * * 5715 6603 * * * * 177 4724 * * 6583 * * * 5251 * 6442 29 0 * * * * * * 4647 0 0 R 30 * * * 5371 * 6665 5779 * 3247 * * 6522 5630 * 342 6369 * 6583 * * 30 0 * * * * * * 4647 0 0 I 31 5672 * * * 1181 6221 * 4032 6369 3990 3711 * * 5170 * * 3989 2232 * 6671 31 0 * * * * * * 4647 0 0 S 32 2894 * * 6228 * * 6768 5859 2988 6348 6211 6665 * 992 4455 4362 5010 5245 * 6676 32 0 * * * * * * 4647 0 0 K 33 3468 * * * * * 3421 6838 1476 3158 7074 3695 * 2888 3673 5150 * 6665 * * 33 15 6579 * 0 * * * 4647 1000 0 A 34 1042 * * 4529 * 5364 6141 6228 4179 5806 6768 5905 * 5895 6722 3470 5442 2468 * * 34 31 5536 * 0 * * * 4647 1525 0 L 35 3608 * * * * 6579 * 4452 5994 4214 4088 5317 * * 6038 3354 922 3888 * * 35 57 5048 6852 0 * * * 4647 1713 0 G 36 3967 * * 5631 * 593 * * 6518 * 5694 5085 * * 3421 3463 6767 * * * 36 44 5730 6524 0 * * 0 4646 1438 1000 N 37 5113 * 5881 5206 * 2693 * * 5624 6649 * 3492 5505 1367 3549 3796 4096 5180 * * 37 7 7712 * 0 * 1000 1000 4641 1000 1320 S 38 2780 * * 4897 6662 5207 * 4807 6599 844 * 5564 5102 * * 5214 4284 4256 * * 38 15 6580 * 0 * 0 * 4645 1000 1000 A 39 3811 * 3262 1467 5578 4446 * 6526 5181 * * 4617 3505 4676 * 3219 4424 5428 * 6332 39 189 3453 4999 474 1838 * * 4647 2788 0 K 40 4595 * 5142 6129 * 6786 * * 1615 * * 1206 * 3586 5597 5098 6159 * * * 40 41 6198 6108 0 * 861 1153 4610 1391 1517 N 41 * * * * * * 4591 5168 * 2650 * 4353 1819 6773 * 3430 1759 4582 * * 41 0 * * * * 925 1079 4600 0 1313 S 42 2399 * 5108 * 5832 3130 2443 6705 5850 6467 7418 5022 5796 5540 5855 1687 5410 * * * 42 25 * 5862 * * * 0 4631 0 1000 K 43 5205 * 6546 2744 * * * 6769 1960 5137 6162 5773 * 3547 1431 5834 * 6376 * * 43 0 * * * * 800 1233 4589 0 1480 I 44 * * * * 3221 * * 849 * 2563 3866 * 6534 * * 7093 * 3613 * * 44 0 * * * * * 0 4631 0 1000 H 45 * 6646 6209 6183 * 3499 5417 * 1571 * * 5936 4348 4896 1555 3951 6605 * * * 45 0 * * * * * 0 4572 0 1000 G 46 4035 * 4490 2256 6737 6045 4341 5089 3576 4392 7140 4746 7160 3221 3914 5706 3225 3575 * 6012 46 0 * * * * * 0 4572 0 1000 V 47 2694 6150 * * 6200 * * 2583 6682 3359 4979 5518 * * * * 3370 1406 * 5961 47 0 * * * * * 0 4570 0 1000 R 48 * * * * * * 6265 * 1886 * * * * * 517 5808 * * * * 48 0 * * * * * 0 4570 0 1000 K 49 * * * * * * 4761 6516 930 5800 * 5806 * * 1481 * * 4920 * * 49 0 * * * * * 0 4570 0 1000 N 50 4133 * 1507 3194 * 6702 * * 5417 6010 6621 2555 * 5737 4336 3855 3262 6447 * * 50 0 * * * * * 0 4570 0 1000 V 51 6257 * * * * * * 326 * 3784 * * * * * * * 3098 * * 51 0 * * * * * 0 4570 0 1000 A 52 54 * * * * * * * * * * * * * * 5961 * 5604 * * 52 0 * * * * * 0 4575 0 1000 R 53 * 6759 * * * * * * 4565 5443 * * 5604 3246 348 * * 6200 * * 53 0 * * * * * 0 4575 0 1000 V 54 3488 * * * 6247 * * 1321 * 3234 3768 * * * * * 5127 1790 * * 54 0 * * * * * 0 4575 0 1000 L 55 * * * 4541 * * 6748 * 1692 948 5481 4874 * 5723 * * * * * 4495 55 0 * * * * 0 * 4575 0 1000 T 56 * * * * * * * 6450 6199 6561 * * * * 6437 6010 93 * * * 56 0 * * * * * * 4600 0 0 V 57 4736 * * 6505 * * * 1394 * 4445 5815 * * * * * * 979 * * 57 0 * * * * * * 4586 0 0 Y 58 5225 * * 4628 6751 * 6714 2057 4391 1519 3414 * * 4873 3966 5973 * 5589 * 4370 58 0 * * * * * * 4548 0 0 N 59 6300 * * * * 5902 4040 * 4650 * 5684 1441 * 5194 1866 2996 4182 * * * 59 0 * * * * * * 4530 0 0 Q 60 4261 * * 740 * * 6304 5943 * 5263 * * * 1867 * * * 5653 * * 60 0 * * * * * * 4505 0 0 K 61 4878 * * 6681 * * * 6274 1308 * * 5617 * 3581 1526 4974 4142 * * * 61 0 * * * * * * 4504 0 0 R 62 4330 * * 1835 * * * 5482 2947 5226 * 5195 * 2143 2705 4591 5352 5780 * * 62 0 * * * * * * 4518 0 0 K 63 5401 * * * * * * 4287 1795 1976 5720 * * * 1597 6009 * 5836 * * 63 30 5614 * 2322 322 * * 4499 1000 0 M 64 3296 * 4159 1844 * * * * 3266 4447 4401 2328 * 4138 * 3629 5070 * * * 64 0 * * * * * * 4457 0 0 E 65 1725 * 4847 1665 * 5924 5795 * 4317 * * 3011 * 3758 5567 4517 * * * * 65 0 * * * * * * 4386 0 0 L 66 1870 * * * * 4813 * * * 1026 * * * 3990 * * 4960 3253 * * 66 0 * * * * * * 4095 0 0 R 67 * 4860 * * * 4442 * 4221 3391 * * * * 3459 693 * * 4030 * * 67 0 * * * * * * 3982 0 0 Q 68 3200 * * 1523 * * * * 1376 4228 4698 4732 * 5141 * * * * * * 68 0 * * * * * * 3678 0 0 L 69 1357 * * * 2560 * 4871 * 2577 3818 * * * 3889 * 3930 * 4865 * * 69 0 * * * * * * 3662 0 0 Y 70 3830 * 3722 * 3685 * 5442 * * * * * * * * * * * * 409 70 33 5488 * 1000 1000 * * 3662 1000 0 K 71 1953 * * 3403 * * * * 1374 * 5762 * * * 3378 4865 4769 * * 3722 71 0 * * * * * * 3662 0 0 N 72 * * 4649 * * 1352 * * 2410 * * 1723 * * * 3695 * * * * 72 0 * * * * * * 3662 0 0 K 73 2279 * * * * * * 4769 968 3714 * * * * 3823 4644 4083 * * * 73 50 4865 * 1000 1000 * * 3662 1000 0 K 74 3722 * * 3516 * * * * 913 * * * 3269 * 4749 3003 4644 * * * 74 66 4483 * 1000 1000 * * 3662 1000 0 F 75 * * * 4769 3663 * 3516 * 2732 2994 * * * * * * * 2891 * 1373 75 154 4083 4567 1000 1000 * * 3662 1000 0 K 76 5110 * * 3648 * * * 2321 2531 2760 4729 * * * 4595 * 3493 2304 * * 76 61 4595 * 1585 585 * 0 3633 1000 1000 P 77 * * * 3648 * * * * * * * * 171 * * 4973 * * * * 77 0 * * * * * 0 3633 0 1000 Y 78 3648 * * * * * * 3895 1692 1297 * * * * * * 4828 4600 * 4059 78 0 * * * * * 0 3633 0 1000 N 79 * * 863 2424 * * * * * * * 2934 * 4690 * * 4244 4595 * * 79 0 * * * * * 0 3633 0 1000 L 80 * * * * 4244 * * * 3648 269 4729 * * * * * * * * * 80 0 * * * * 0 * 3633 0 1000 R 81 3722 * * * * * * * * * * * * * 114 * * * * * 81 0 * * * * * * 3662 0 0 K 82 5149 * * 4733 * 3110 * * 3049 * * * 1126 4200 5762 5159 4649 3955 * 4865 82 0 * * * * * * 3662 0 0 K 83 * * * * * * 3980 * 230 * * * * * 3574 * * * * * 83 0 * * * * * * 3662 0 0 L 84 * * * 3722 * * * * 1171 1586 * * * 3101 * * 5044 * * * 84 0 * * * * * * 3662 0 0 T 85 * * * 3980 * * * * * * * 4083 * * * * 319 3722 * * 85 0 * * * * * * 3662 0 0 K 86 * 5488 * * * 4567 3480 * 3049 * * * * * 464 * * * * * 86 0 * * * * * * 3662 0 0 N 87 307 * * * * * * * * * * 5084 * * 4649 3031 * * * * 87 0 * * * * * * 3662 0 0 K 88 * * * 4483 * * * 1830 1516 3012 2983 * * 4871 4649 * * * * * 88 0 * * * * * * 3662 0 0 R 89 * 4567 * * * * * * * * * * * 3722 181 * * * * * 89 0 * * * * * * 3662 0 0 L 90 * 4328 * * * 4567 * * 4324 3362 * 3980 * 4644 605 * * * * * 90 0 * * * * * * 3662 0 0 Q 91 1350 * * 5160 * 4988 * * 2443 * * * * 3041 2041 * * * * * 91 0 * * * * * * 3662 0 0 L 92 * * * * 3722 * * * * 114 * * * * * * * * * * 92 0 * * * * * * 3662 0 0 S 93 3980 * * * * * * * 4649 3722 * 5769 * * * 3232 522 * * * 93 0 * * * * * * 3662 0 0 P 94 3869 * * 2596 * * * * 1314 * * 4865 2061 * 4644 * 4324 * * * 94 0 * * * * * * 3662 0 0 K 95 5159 * 5149 3141 * * 2303 * 1421 * * 4649 * * * 3341 3477 * * 5264 95 0 * * * * * * 3662 0 0 Q 96 * * 5762 1230 * * * * * * * * * 1024 * * * * * 3980 96 0 * * * * * * 3662 0 0 K 97 2415 * * 4826 * * * * 1787 2644 * * * 3506 3339 4826 * * * 3246 97 0 * * * * * * 3653 0 0 A 98 2904 * * * * 3219 4744 * 3596 * * 2433 * * 3182 1897 3732 * * * 98 0 * * * * * * 3653 0 0 A 99 3496 * * * * * 4710 4005 2875 2542 4956 * * 2448 1988 * * 4826 * * 99 0 * * * * * * 3653 0 0 M 100 * * * 4710 * * 4692 * 1033 2761 4361 * * 3057 * * * 3083 * * 100 63 * 4538 * * * * 3653 0 0 T 101 * * * * * * * * * 5087 4403 * 4215 * * 3045 418 * * * 101 0 * * * * * 0 3624 0 1000 L 102 2856 * * 3638 * * 4945 3790 4678 2786 * * 4403 2762 4041 3377 * 2827 * * 102 0 * * * * 0 * 3624 0 1000 R 103 * * * * * * * * 1149 * * * * 3086 1213 * * * * * 103 0 * * * * * * 3445 0 0 Q 104 4812 * * 2273 * * * * * 4203 5649 * * 1021 * 4571 4020 3529 * * 104 0 * * * * * * 3445 0 0 K 105 4924 4819 * * * * * 3720 3113 * 2839 * * 2454 2468 2799 * * 3419 * 105 0 * * * * * * 3445 0 0 K 106 3933 * * * * * * * 892 * * 4583 * * 1628 * 5036 * * * 106 0 * * * * * * 3445 0 0 K 107 * * * * * * * * 1328 * * * * 4525 942 * 4738 * * * 107 0 * * * * * * 3445 0 0 V 108 2379 4647 3843 2297 * * 3824 * 3560 3290 3933 * * * 3494 5649 5000 4979 * * 108 0 * * * * * * 3445 0 0 Q 109 2883 * * 3765 * * 4525 * 3824 2846 5316 4495 * 4010 2683 3151 3943 3777 * * 109 0 * * * * * * 3445 0 0 N 110 3183 3824 * * * * 3388 4409 2661 3559 * 1819 * 4203 * 4571 * * * 4214 110 0 * * * * * * 3445 0 0 F 111 * * * * 433 * * * * 3262 * 4346 * * * * * * * 3238 111 0 * * * * * * 3445 0 0 P 112 4767 * * * 3824 * * * * * * * 196 * * * 5649 * * * 112 0 * * * * * * 3445 0 0 Q 113 * * * 3824 * * * 5649 1648 2857 4169 * 3878 2746 2478 * * * * * 113 0 * * * * * * 3445 0 0 R 114 * * * * * * * 4346 4767 4203 * * * * 398 * * 3309 * * 114 0 * * * * * * 3445 0 0 K 115 * * * * 4346 * * 3933 548 4583 * * * * * * * 2647 * * 115 0 * * * * * * 3445 0 0 Y 116 * * * * 1268 * * * * * * * * * * * * * * 774 116 0 * * * * * * 3445 0 0 L 117 92 * * * * * * * * 4010 * * * * * * * * * * 117 0 * * * * * * 3445 0 0 V 118 * * * * * * * 2778 * 1456 * * * * * * * 1030 * * 118 0 * * * * * * 3235 0 0 V 119 * * * * * * * 2017 * 1363 * * * * * * * 1457 * * 119 0 * * 0 * * * 1917 0 0 //