HHsearch 1.5 NAME c1vw40_ FAM FILE c1vw40_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1vw40_.a3m DATE Sat Apr 12 08:21:51 2014 LENG 38 match states, 38 columns in multiple alignment FILT 40 out of 44 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4784 2.4077 SEQ >ss_dssp CEEESCCCCCSTTEEEEEETTEEEEEESSCTTCCEEEC >sa_dssp ECEDEEBEDDCEDBDDDEDEEDCBACBEDDEECCACDE >ss_pred CCCHHHHHHHCCCCEEEEECCEEEEEECCCCCHHHCCC >ss_conf 95204667523587699988979999769886021079 >Consensus mKvrxsvKkxCxxCxxvrRkgrvyVxCkxnpkHKQRQG >c1vw40_ FKVRTSVKKFCSDCYLVRRKGRVYIYCKSNKKHKQRQG >UniRef50_C1N9S2(1-38:101) Ribosomal protein L36 (Fragment) n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N9S2_9CHLO E=6e-05 s/c=1.28 id=54% cov=103% LQVRSALKKMCESCRFVKRKGRVYVVCDKVPKHKQRQG >UniRef50_A5IMA7(1-38:38) 50S ribosomal protein L36 n=250 Tax=cellular organisms RepID=RL36_THEP1 E=0.0001 s/c=1.25 id=56% cov=103% MKVQASVKKRCEHCKIIRRKKRVYVICKVNPKHNQKQG >UniRef50_C1A4J4(1-38:38) 50S ribosomal protein L36 n=25 Tax=cellular organisms RepID=RL36_GEMAT E=0.0002 s/c=1.23 id=56% cov=103% MKVRSSVKPICEHCKVVKRQGVTRIICKRNPKHKQRQG >UniRef50_C1BJQ3(83-120:120) 39S ribosomal protein L36, mitochondrial n=3 Tax=Euteleostei RepID=RM36_OSMMO E=3e-10 s/c=1.75 id=46% cov=103% MKTKSSLKRRCKNCFYVRRRGRLFVFCKTHPRHKQRQG >UniRef50_A0D2L4(1-38:78) Ribosomal protein L36 n=3 Tax=Eukaryota RepID=A0D2L4_PARTE E=2e-07 s/c=1.51 id=49% cov=103% MKVKSALKKMCEHCYFQRKGKKVYVRCKSDPRHKQRQG >UniRef50_UPI00015B4680(73-109:131) PREDICTED: similar to ENSANGP00000014147 n=1 Tax=Nasonia vitripennis RepID=UPI00015B4680 E=0.0002 s/c=1.28 id=39% cov=100% MKQKGRLQLRCEGCYYVSRQGRLYVMCKLKPRHKQMQ- >UniRef50_Q56FJ1(71-107:130) Ribosomal protein L36 n=2 Tax=cellular organisms RepID=Q56FJ1_LYSTE E=0.0003 s/c=1.25 id=42% cov=100% MKVVGKLQRRCKDCYFFATKGRWFIRCKTHPRHKQAQ- >UniRef50_Q5EMS7(87-129:130) Ribosomal protein L36 n=1 Tax=Magnaporthe grisea RepID=Q5EMS7_MAGGR E=0.0005 s/c=1.06 id=47% cov=100% MKLRSAITKRCEHCKVVRRKRGkrhrgyLYIICSANPRHKQRQ- >UniRef50_B7P5E5(58-94:116) Ribosomal protein L36, putative n=1 Tax=Ixodes scapularis RepID=B7P5E5_IXOSC E=0.0005 s/c=1.23 id=42% cov=100% FKDMDVLTKRCKDCYFKKDDDRWYVLCKTHGRHKQRQ- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 1663 * * * * 4393 722 * * * * * * * * 5042 1 0 * * * * * * 2635 0 0 K 2 * * * * * * * * 67 * * * * 4471 * * * * * * 2 0 * * * * * * 2564 0 0 V 3 * * 4361 * * * * * * 5047 * 5604 * 4547 * * 3002 448 * * 3 0 * * * * * * 2564 0 0 R 4 * * * * * * 4982 * 1574 * 3807 * * 4847 1072 * * 4306 * * 4 0 * * * * * * 2564 0 0 T 5 2889 * 4361 * * 2289 * * * * * * 3868 * * 1258 2999 * * * 5 0 * * * * * * 2564 0 0 S 6 2730 * * * * * * * 4306 * * * * * 3214 797 * 3115 * * 6 0 * * * * * * 2564 0 0 V 7 * * * * * * * 3359 * 1379 * * * * * * * 949 * * 7 0 * * * * * * 2564 0 0 K 8 * * * * * * * * 318 * * * * 3421 5285 * 3664 * * * 8 0 * * * * * * 2564 0 0 K 9 * 5768 * 5306 * * * * 988 4029 * * 3757 * 1759 * * 5533 * * 9 0 * * * * * * 2564 0 0 F 10 * * * * 3536 * * 2821 * 3437 2305 * * * 1066 * * * * * 10 0 * * * * * * 2564 0 0 C 11 * 0 * * * * * * * * * * * * * * * * * * 11 0 * * * * * * 2564 0 0 S 12 4341 * 3922 1250 * * * * 1850 * * 4566 5089 * 4378 3895 * * * * 12 0 * * * * * * 2564 0 0 D 13 * * 1617 5559 4606 3022 2286 * 3395 * * 3917 * * * 3434 * * * 5072 13 0 * * * * * * 2564 0 0 C 14 * 0 * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 2564 0 0 Y 15 * * * * 4119 * * * 1616 * * 5707 * 4653 3425 5533 * * * 1176 15 0 * * * * * * 2564 0 0 L 16 * * * * 1705 * * 2283 5581 4082 5870 * 5567 * 5306 4590 * 2046 * 4044 16 0 * * * * * * 2564 0 0 V 17 5089 * * * 4306 * * 2489 4361 * * * * 4806 * * * 605 * * 17 0 * * * * * * 2564 0 0 R 18 4306 * * * * * * * 1353 * 5627 * * * 1212 4547 * 3983 * * 18 0 * * * * * * 2564 0 0 R 19 * * 4361 * * * * * 4806 * * * * * 209 * 4306 * * * 19 28 5705 * 2585 263 * * 2564 1000 0 K 20 * * 4361 * * 4806 4288 * 1000 * * * * 2927 2101 * * * * * 20 46 4982 * 2585 263 * * 2564 1058 0 G 21 * * 4361 4464 * 387 * * 3827 * * 5567 * 5665 5047 * * * * * 21 0 * * * * * * 2564 0 0 R 22 * * * * * 5047 5705 5072 4105 * * 5381 * * 487 5250 * 3889 * 4982 22 44 5047 * 2585 263 * * 2564 1000 0 V 23 * * * * * 5318 * 5250 * 2004 * * * * * * 5401 972 2591 * 23 0 * * * * * * 2564 0 0 Y 24 * * * * 2486 * * * * 5292 3513 * * * 3415 * * * * 702 24 0 * * * * * * 2564 0 0 I 25 * * * * * * * 1710 * * * * * * * * * 526 * * 25 0 * * * * * * 2564 0 0 Y 26 * * * * 4119 * * 1165 * 2738 4547 * * 5072 3534 * * 3907 * 3046 26 0 * * * * * * 2564 0 0 C 27 * 0 * * * * * * * * * * * * * * * * * * 27 132 * 3515 * * * * 2564 0 0 K 28 * * 4355 4997 * * * * 568 * * 5577 5180 * * 2536 5355 * * * 28 46 * 4997 * * 0 * 2638 0 1362 S 29 3053 * * 5370 * * * 5702 2635 4115 * * * * 5217 2153 1830 3566 * * 29 0 * * * * 0 * 2635 0 1000 N 30 * * 4094 * * * 1884 * 4029 * * 826 * * * * * 4471 * * 30 0 * * * * * * 2564 0 0 K 31 5072 * * * * 3139 * * 5634 * * 5673 337 * * * * 5292 * * 31 0 * * * * * * 2564 0 0 K 32 * * * * * * * * 926 * * * * * 1078 * * * * * 32 0 * * * * * * 2564 0 0 H 33 * * * * * * 0 * * * * * * * * * * * * * 33 0 * * * * * * 2564 0 0 K 34 * * * * * * * * 51 * * 4847 * * * * * * * * 34 0 * * * * * * 2564 0 0 Q 35 * * * * * * * * * * * * * 42 * * 5128 * * * 35 0 * * * * * * 2564 0 0 R 36 4206 * * * * * * * 3564 * 4278 * * * 304 * * * * * 36 0 * * * * * * 2552 0 0 Q 37 * * * * * * * * * * * * * 0 * * * * * * 37 0 * * * * * * 2552 0 0 G 38 * * * * * 0 * * * * * * * * * * * * * * 38 0 * * 0 * * * 2197 0 0 //