HHsearch 1.5 NAME c1va3A_ FAM FILE c1va3A_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1va3A_.a3m DATE Fri Mar 12 09:49:21 2010 LENG 29 match states, 29 columns in multiple alignment FILT 109 out of 10126 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.4 EVD 0.5336 3.3960 SEQ >ss_dssp CCCCCSSSSCCCSCSHHHHHHHHHHSCCC >sa_dssp EECEBEECEEECEEDEEBDECDEECEEEE >ss_pred CCEECCCCCCEEEEHHHCCEEEEEECCCC >ss_conf 91577632848864322644352107689 >Consensus KpyxCxxCgkxFxxxxxLxxHxrxHtgek >c1va3A_ KKFACPECPKRFMRSDHLSKHIKTHQNKK >UniRef50_B6HNF6(17-45:776) Pc21g22480 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HNF6_PENCW E=6e-05 s/c=1.68 id=33% cov=103% RRFTCMSCNKSFKRSEHCARHELMHTQER >UniRef50_A5DH27(538-566:602) Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DH27_PICGU E=0.0004 s/c=1.58 id=33% cov=103% KTHECHLCHSKFHRPEHVKRHLKSHSSEK >UniRef50_P07247(220-247:502) Protein krueppel n=11 Tax=Schizophora RepID=KRUP_DROME E=0.0007 s/c=1.60 id=35% cov=90% KSFTCKICSRSFGYKHVLQNHERTH---- >UniRef50_C3YHJ9(677-705:1925) Putative uncharacterized protein n=5 Tax=Branchiostoma floridae RepID=C3YHJ9_BRAFL E=0.0001 s/c=1.66 id=33% cov=103% KPYMCGECGFRTAHQCYLSRHMRTHTGER >UniRef50_UPI000059FFA0(462-490:605) PREDICTED: similar to zinc finger protein 420 n=1 Tax=Canis lupus familiaris RepID=UPI000059FFA0 E=8e-05 s/c=1.67 id=33% cov=103% KPYECKQCGKAFSRVGDLKTHQSIHAGDK >UniRef50_A9D4E4(496-524:694) Putative uncharacterized protein n=4 Tax=Caenorhabditis RepID=A9D4E4_CAEEL E=7e-06 s/c=1.78 id=33% cov=103% KKERCNFCNKVFTNRSNLIVHLRSHTGEK >UniRef50_B7PM43(115-143:245) Zinc finger protein, putative n=1 Tax=Ixodes scapularis RepID=B7PM43_IXOSC E=0.0003 s/c=1.60 id=27% cov=103% KPFKCSTCQQTFSQKAHVRHHQWVHTGER >UniRef50_O02273(63-89:318) Protein F52F12.4, confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=O02273_CAEEL E=0.0003 s/c=1.72 id=23% cov=90% KPYICDVCGRGFRYKSNMFEHRTVH---- >UniRef50_B0W753(465-491:715) Zinc finger protein 394 n=1 Tax=Culex quinquefasciatus RepID=B0W753_CULQU E=0.0009 s/c=1.66 id=33% cov=83% --FKCTICGKGFRQSPMYKDHMRLH---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 126 * * * * * 3575 * * * * * 1 0 * * * * * * 4968 0 0 K 2 5972 * * * * * * 5942 3462 5203 * 5675 813 4542 2824 5511 4620 * * 6113 2 0 * * * * * * 5303 0 0 F 3 * * * * 1475 * 2998 * * 5608 * * * * * * * * * 1016 3 0 * * * * * * 5413 0 0 A 4 3577 6544 6522 2672 6866 * 5725 5162 2505 4565 6180 * 4669 3305 3667 4086 3362 3741 * * 4 0 * * * * * * 5412 0 0 C 5 * 0 * * * * * * * * * * * * * * * * * * 5 0 * * * * * * 5422 0 0 P 6 5447 6194 3062 2931 * 4623 4620 6303 3056 6610 6736 3400 3150 4447 4664 2964 4636 7022 6651 * 6 0 * * * * * * 5422 0 0 E 7 * * 5422 2683 3851 * 3898 2864 5781 4007 6108 * * 3135 5774 6464 3963 2914 * 3157 7 14 6704 * 1000 1000 * * 5422 1000 0 C 8 * 41 * * * * * * * * * * * * * * * * * 5166 8 0 * * * * * * 5422 0 0 P 9 6741 6314 3233 4655 5558 1040 4309 * 6555 5655 * 3420 5409 5200 6849 4173 6244 6561 6431 * 9 0 * * * * * * 5422 0 0 K 10 5030 * 6538 6380 6190 * 5900 5632 919 5164 6702 * * 4457 2441 5864 6342 * * 3824 10 0 * * * * * * 5422 0 0 R 11 2310 3858 * 4960 * 3673 * * 3579 6282 6500 * 6239 5040 2863 2629 2992 4545 * * 11 0 * * * * * * 5422 0 0 F 12 6101 5211 * * 362 * * 6092 * 5560 * * * * * 6303 4558 5642 * 3855 12 0 * * * * * * 5422 0 0 M 13 3508 * 6378 * * 4374 5214 4261 3691 5029 6040 3547 * 6239 2634 2410 2791 5939 * 4621 13 0 * * * * * * 5422 0 0 R 14 5658 5661 5373 6902 5385 6684 3491 6385 4011 5035 * 7089 * 2209 1692 4770 4184 5962 4659 5617 14 0 * * * * * * 5422 0 0 S 15 4597 * * 5429 6313 5806 6342 4444 1941 4810 6380 4746 3479 3812 3145 2342 7145 6718 6194 * 15 0 * * * * * * 5422 0 0 D 16 4958 5525 3182 3213 5523 4094 3742 * 6699 5708 * 5422 5337 4243 6385 2014 3157 5056 * 4585 16 0 * * * * * * 5422 0 0 H 17 4289 6674 4294 4016 * 5105 1804 * 5600 5905 5438 2630 * 4109 4562 3850 4761 * * 3602 17 0 * * * * * * 5422 0 0 L 18 * 5710 * * 4659 * * 6577 4858 538 4431 * * 6474 4996 * * 5041 5458 3928 18 0 * * * * * * 5422 0 0 S 19 4481 6313 5834 4937 6536 6557 * 4784 1797 5106 5892 3704 * 4094 4733 4383 2512 3373 * 6876 19 0 * * * * * * 5422 0 0 K 20 5006 * 5842 4039 6746 6704 * 3355 3183 4297 * 4864 * 3118 1744 5131 4322 4067 * 5228 20 0 * * * * * * 5422 0 0 H 21 * * * * * * 0 * * * * * * * * * * * * * 21 0 * * * * * * 5422 0 0 I 22 6809 * * 3335 6640 * 5216 3683 3339 2865 2401 5764 * 2712 3247 5168 6002 4971 * * 22 14 6723 * 0 * * * 5408 1000 0 K 23 * * 6469 * 6305 6519 * 5886 2581 3773 5740 4750 * 4762 911 5820 6083 5244 * 5354 23 16 6548 * 0 * * * 5408 1000 0 T 24 6655 * * * * 6453 * 2112 4589 4745 5424 * * 5252 4282 3483 1557 2856 * * 24 14 6644 * 0 * * * 5408 1000 0 H 25 * * * * * * 0 * * * * * * * * * * * * * 25 0 * * * * * * 5408 0 0 Q 26 5345 * 4815 4315 * * * * 6461 3806 4621 4846 * 5295 5341 2677 930 * * * 26 0 * * * * * * 5156 0 0 N 27 5445 * 5639 5240 * 847 5764 * 3815 6230 * 3529 * 4527 3978 3921 6340 * * * 27 0 * * * * * * 5150 0 0 K 28 5259 * 3278 841 * * * * 3868 5503 * 5838 * 3394 5260 * 4746 4438 * * 28 0 * * * * * * 5135 0 0 K 29 * * * * * * * * 638 * * * * * 1484 * * * * * 29 0 * * 0 * * * 4867 0 0 //