HHsearch 1.5 NAME c1un6D_ FAM FILE c1un6D_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1un6D_.a3m DATE Fri Mar 12 00:46:15 2010 LENG 58 match states, 58 columns in multiple alignment FILT 105 out of 12523 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.5 EVD 0.5558 2.8982 SEQ >ss_dssp CCCBCCSTTCCCBCSCHHHHHHHTTSSCCEECCSSTTCCCEESSHHHHHHHHHHSSCC >sa_dssp EEDDBDCEEBEEDCDDDEDBDECAEECECCDBEDEEEDECDAEBDDDCDDBBDEDCEE >ss_pred CCEECCCCCCCCEECCCHHCEECCCCCCCCCCCCCCCCCEEECCHHHHCCCEEEECCC >ss_conf 9413475647680032022132041226763611688880336834733210301698 >Consensus xPyxCxxxxCxkxFxxxxxLxxHxxxHxgxkxxxCxxCxkxfxxxxxlxxHxrxxHxe >c1un6D_ LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD >UniRef50_B6QNR6(22-78:593) C6 and C2H2 transcription factor, putative n=2 Tax=Trichocomaceae RepID=B6QNR6_PENMQ E=1e-09 s/c=1.13 id=24% cov=100% -PYKCSDPGCGASYLRREHLIRHEAQHSEAPAHVCKVCGLGFSRSDSLRRHERAHSKD >UniRef50_B4IY66(253-313:767) GH16292 n=2 Tax=Drosophila RepID=B4IY66_DROGR E=0.0005 s/c=0.74 id=22% cov=100% LPFQCTVETCRKGFTTAAGLRHHVDHAHSELCelhaCTVEGCDKAFPRTRMLTHHLKKVHK- >UniRef50_Q4SIC2(379-432:2458) Chromosome 5 SCAF14581, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4SIC2_TETNG E=0.0007 s/c=0.84 id=22% cov=95% --YRCNQ--CSLAFKTVEKLQLHSQYHVIRAATMCCLCQRSFRTLQALKKHLETSHME >UniRef50_C4WXH9(80-136:225) ACYPI006972 protein n=2 Tax=Acyrthosiphon pisum RepID=C4WXH9_ACYPI E=0.001 s/c=0.78 id=22% cov=100% -PFNCDAPDCNFKTGDHNSLRRHKLRHSNERPYKCTHCDYKCIQVTALKSHITNNHRD >UniRef50_Q52M93(130-183:769) Zinc finger protein 585B n=16 Tax=Euarchontoglires RepID=Z585B_HUMAN E=0.001 s/c=0.83 id=24% cov=95% --YECAEF--GKSFTWKSQFKVHLKVPTGEKLYVCIECGRAFVQKPEFITHQKTHMRE >UniRef50_Q16FS3(518-571:601) Putative uncharacterized protein n=1 Tax=Aedes aegypti RepID=Q16FS3_AEDAE E=0.0003 s/c=0.85 id=22% cov=93% ---KCPI--CGKHFKRYSEVNQHVRfYHQKQKPFACFYCSKTYPRKDYRKRHMVSAHPE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 412 2008 * * * * * * * * * 1 0 * * * * * * 3583 0 0 P 2 * * * * * * * * 5198 * * * 121 * * 4238 * * * * 2 0 * * * * * * 6323 0 0 Y 3 * * * * 1253 * 4309 5354 * 5177 * * * * * * 5296 6147 * 1190 3 33 * 5472 * * * * 7287 0 0 E 4 3969 * * 4052 5490 5473 4285 4431 1795 6412 * 5427 3712 3664 3558 4867 5021 3867 * 4772 4 0 * * * * * 0 7381 0 1000 C 5 * 30 * * * * * * * * * * * * * * 5603 * * * 5 33 * 5466 * * 0 * 7560 0 1000 P 6 6601 * 2660 4162 * 4767 4433 6512 3196 5584 5452 4307 2968 4516 3739 3642 2836 6429 * * 6 52 * 4812 * * * 0 7560 0 1671 H 7 6425 3862 6658 3736 2894 5994 3698 3680 * 5223 * 6380 * 3119 6349 5806 * 2919 3539 2976 7 875 5301 1220 2150 368 1312 744 7506 1580 2957 E 8 4193 * 4362 2181 5489 4707 5654 5339 3453 5380 4443 4104 2113 4136 5588 5520 5567 * * * 8 0 * * * * 3489 135 6921 0 6400 G 9 * * 2740 4399 * 1741 * * 3343 5603 * 2992 5897 4688 5424 3652 3774 5192 * * 9 0 * * * * 0 * 7079 0 6398 C 10 * 72 * * 6146 5836 * 5894 * * * * * * * * * * * * 10 24 5937 * 2044 401 * * 7702 1646 0 D 11 5594 * 3694 4205 * 1632 6504 * 4027 5057 * 3606 4037 3755 4604 3479 4033 * * 6188 11 0 * * * * * * 7702 0 0 K 12 5710 * 6413 5148 5438 * 6284 6494 1210 4466 5771 4921 * 3893 2510 4784 5445 5016 * 4965 12 0 * * * * * * 7711 0 0 R 13 2604 * * 5109 5889 4884 4868 5606 4009 5165 5843 6146 * 4032 3195 2271 3630 3327 6541 6525 13 22 6019 * 2599 260 * * 7711 1701 0 F 14 6562 5789 * * 424 * * 5411 * 4926 * * * 6997 * 6520 4389 6672 * 3419 14 19 6289 * 2322 322 * * 7711 1000 0 S 15 4513 6417 6815 * 5363 4293 5587 4651 2824 4771 5641 4669 4308 7635 3392 2537 2611 4288 * 5347 15 0 * * * * * * 7711 0 0 L 16 5369 6563 3958 5072 6016 5481 4278 * 4086 3965 6207 5825 * 3861 2580 2702 2422 6426 6851 5006 16 0 * * * * * * 7711 0 0 P 17 3453 * 4836 5006 6982 * 5054 6478 2073 3732 5972 5189 4597 4301 2964 2980 4908 5635 5801 5743 17 0 * * * * * * 7711 0 0 S 18 3239 * 3767 4125 5455 4256 4297 5312 4757 5055 6566 4909 6281 4488 4936 1923 3447 6626 * 4456 18 0 * * * * * * 7711 0 0 R 19 3606 * 2667 3922 6383 4476 3444 5476 4691 5156 6478 3380 * 4484 3598 3333 3998 6664 6585 4652 19 0 * * * * * * 7711 0 0 L 20 5499 6237 * * 3794 6281 * 4745 * 647 3857 * * 6413 5212 * * 5906 4809 4517 20 0 * * * * * * 7711 0 0 K 21 4618 * 4897 4270 * * 5460 3630 2475 6289 5699 4841 * 3817 2235 4433 3175 4022 6523 6528 21 15 * 6582 * * * * 7711 0 0 R 22 4890 * 3727 3760 * * 4816 5252 3506 3997 6944 4005 6278 4848 1969 3050 5205 4204 6824 5627 22 0 * * * * * 0 7691 0 1000 H 23 * * * * 5272 5839 153 * * 5871 * * 5894 * * * * * * 5413 23 15 6603 * 0 * * 0 7691 1000 1000 E 24 4287 5101 * 2533 6622 5150 6146 3668 3520 3138 2989 5450 * 3348 5934 4627 5463 3674 * 6637 24 50 4889 * 0 * * 0 7691 2459 1000 K 25 3622 * 4679 6016 5777 * * 4297 2401 4069 6286 4661 6598 4746 1774 4979 4387 4251 6619 6412 25 27 5727 * 0 * 0 * 7691 1653 1000 V 26 4907 6407 6367 6771 * 5748 5438 2518 4395 4319 6626 5837 * 4361 4013 3246 2603 2540 5155 6450 26 55 4739 * 0 * * * 7711 2615 0 H 27 6241 * * 5754 * * 267 * * * * 5083 * * 4672 5490 * 4974 * 6147 27 70 4395 * 1110 898 * * 7711 2897 0 A 28 3765 5212 4588 6896 6600 6235 3891 5221 3772 4694 6425 3737 * 6657 3872 2961 1861 4571 * 6761 28 63 4538 * 2225 347 * * 7703 2577 0 G 29 3905 * 4820 5907 * 1053 5969 4616 3466 6197 * 4373 5137 5025 4885 4224 4864 6761 * * 29 143 3402 * 1252 786 * * 7703 4056 0 Y 30 5110 * 3617 1922 4397 5572 5319 4116 4418 3726 6663 * 4666 6322 5413 4032 5722 4992 5061 2997 30 0 * * * * * * 7678 0 0 P 31 4574 6298 6580 5012 6408 5734 6809 5198 1431 4799 4577 * 4010 4420 2678 4636 4967 4553 * 6852 31 0 * * * * * * 7678 0 0 C 32 3992 2227 * 5859 6322 6400 * * 5008 4267 * 4362 1597 5044 3817 4202 4761 5189 * * 32 51 5392 6510 1436 666 * * 7678 1707 0 K 33 * 3806 6442 * 2113 * 2978 * 5495 4931 * 5032 4303 * * * 4111 5819 5588 1615 33 39 6415 6072 0 * 0 * 7662 1000 1000 K 34 3283 6759 6582 3278 5947 5411 5553 4859 2375 6584 6422 6882 5107 3017 4359 3514 4350 4033 * 4138 34 0 * * * * 0 * 7672 0 1547 D 35 * 283 6703 * 6509 * 5455 * 6572 6225 * * 4487 * * 6394 * 6193 * 4620 35 87 4478 6225 1000 1000 * * 7678 2822 0 D 36 6431 6429 2751 2633 * 4355 4269 5757 5247 5611 * 3828 2536 4825 5291 3449 3379 * * 6685 36 15 6593 * 2585 263 0 * 7651 1000 1000 S 37 6658 4134 4333 3301 4265 3803 4442 3621 3147 3876 5447 5560 5114 3973 4644 5149 4187 4014 * 5133 37 0 * * * * * * 7678 0 0 C 38 * 180 6390 * 6450 5678 * * 6394 * * 5465 * 5968 * 6491 * * * 6306 38 11 7026 * 1000 1000 * * 7678 1000 0 S 39 5312 * 2714 3558 * 2387 5373 * 3826 6118 * 3860 3224 4493 6450 2983 4641 5792 6919 6298 39 28 5722 * 1353 717 * * 7678 1620 0 F 40 4920 6793 7095 4043 3742 6828 5732 6645 1305 5183 4876 6735 6394 4893 2700 5012 6491 * * 4046 40 0 * * * * * * 7678 0 0 V 41 3032 4986 5185 5171 5478 3830 6480 5728 3276 5200 4542 5567 6394 5140 3349 2633 3246 5603 6755 4689 41 0 * * * * * * 7678 0 0 G 42 4083 4392 * * 649 5008 * * * 5345 6512 * * * * 4926 4890 * * 3031 42 0 * * * * * * 7678 0 0 K 43 3599 5673 6606 6390 * 6896 5109 4951 2504 4540 5758 6991 4269 6869 3127 2676 3001 4796 * 3877 43 0 * * * * * * 7678 0 0 T 44 5357 * 3768 4987 * * 3759 * 5182 * * 4041 * 3125 2010 3263 2856 * * 3276 44 0 * * * * * * 7678 0 0 W 45 5227 6580 7088 5704 5460 6755 5066 5174 2331 4468 6730 6513 3710 5049 2426 2784 4431 5076 5120 4649 45 0 * * * * * * 7678 0 0 T 46 3902 5321 3000 6190 6592 3709 5640 5964 4058 5045 5725 5053 6679 4067 3693 2248 3490 * 6707 4286 46 0 * * * * * * 7678 0 0 L 47 3584 * 2766 3339 6658 5724 4102 * 4563 3544 5334 2692 5902 3717 5684 3663 5174 6394 * 4464 47 0 * * * * * * 7678 0 0 Y 48 6408 4583 * * 3692 * * 4937 * 707 4368 * * * 5218 * * 4136 6400 3646 48 0 * * * * * * 7678 0 0 L 49 5782 6903 4813 4077 * 5709 6808 3545 2320 3695 6225 4246 * 3379 2567 4192 3971 5438 * 6072 49 15 * 6572 * * * * 7678 0 0 K 50 3051 6634 5397 5928 * 6865 4749 5604 2485 4271 6858 4539 7061 3561 2211 4270 4180 4536 * 5482 50 0 * * * * 0 * 7659 0 1000 H 51 * * * * * * 33 * * * * * * * * * * * * 5455 51 0 * * * * * * 7678 0 0 V 52 4937 6645 * 3894 5966 * 6661 2894 4536 3015 2462 6606 * 2974 4659 5133 5963 3211 * 4271 52 0 * * * * * * 7678 0 0 A 53 4472 * * 4628 * * 6513 6472 1808 4347 6735 5904 * 3571 1490 5328 5373 5027 6408 * 53 0 * * * * * * 7678 0 0 E 54 4686 5936 5179 4555 * 5821 6188 4446 3751 4407 6193 4244 * 6229 3630 2997 1891 3201 * 6407 54 0 * * * * * * 7586 0 0 C 55 3879 4520 6416 5620 4287 * 1553 5789 4415 * 5249 4901 * 3895 4302 4345 4338 3021 * * 55 0 * * * * * * 7522 0 0 H 56 6020 * 6207 6098 * * 540 * 4918 * * 3891 * * 5983 4337 3458 * * 6397 56 0 * * * * * * 7514 0 0 Q 57 5284 * 6107 3644 * * * * 1800 5132 5846 5698 3313 3622 2422 3555 4047 6199 * * 57 0 * * * * * * 7138 0 0 D 58 * * 1654 798 * * * * * * * * * 3220 * * * * * * 58 0 * * 0 * * * 6741 0 0 //