HHsearch 1.5 NAME c1totA_ FAM FILE c1totA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1totA_.a3m DATE Thu Jan 10 23:10:02 2013 LENG 52 match states, 52 columns in multiple alignment FILT 106 out of 453 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.5146 2.6139 SEQ >ss_dssp CBCSSCEEETTTTEEESSEEEESSSSSCEECHHHHHHHCCCSSEEEECSSCC >sa_dssp CECEDDADADDDEEDCCABCBADECEDCBABCEADEEDECEDEBDCDCEEEE >ss_pred CCCCEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCEEEECCCCCC >ss_conf 9972899745768860142432558886446578726899851496377789 >Consensus gxxxfxxxCdxCxxxigxRyxCxxCxDfDLCxxCxxxxxhxHxxxkixxxxx >c1totA_ GQDRFVYTCNECKHHVETRWHCTVCEDYDLCINCYNTKSHTHKMVKWGLGLD >UniRef50_O18138(139-190:229) Protein T26H2.5, partially confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=O18138_CAEEL E=2e-10 s/c=1.28 id=31% cov=98% -NSEFYAKCDSCGTQIaGRRYKCTMCADFDICERCEAKSVHlQHAMLRISTGL- >UniRef50_B9IAS6(52-114:561) Histone acetyltransferase complex component n=11 Tax=Magnoliophyta RepID=B9IAS6_POPTR E=5e-09 s/c=0.98 id=35% cov=100% GQGKLAlYHCNYCHKDISgmVRIKCAVCPDFDLCVECFSvgaevtphKSNHPYRvMDNLSFPL- >UniRef50_Q0ZII2(421-465:467) Joka2 (Fragment) n=1 Tax=Nicotiana plumbaginifolia RepID=Q0ZII2_NICPL E=8e-05 s/c=1.07 id=35% cov=65% --------CDGCGVHPitGPRFISKVKENYDLCIICFAEMGND----------- >UniRef50_Q7RND3(487-536:642) Zinc finger, ZZ type, putative n=7 Tax=Plasmodium RepID=Q7RND3_PLAYO E=1e-07 s/c=1.16 id=31% cov=81% ------YLCDECQyaiMPLSYVFECNTCDNYTLCKKCFKKGKHEHTLKKI----- >UniRef50_UPI00016E196D(1744-1797:2855) UPI00016E196D related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E196D E=6e-09 s/c=1.15 id=33% cov=92% -----VISCDGCERMaPWHRYRCLQCMDMDLCKTCFlsgaKPEGHEddHEMVNMEYACD >UniRef50_UPI00016E4F4F(252-299:681) UPI00016E4F4F related cluster n=3 Tax=Tetraodontidae RepID=UPI00016E4F4F E=6e-06 s/c=1.08 id=30% cov=77% --------CSYCHTEsmMGFRYRCQQCHNYQLCQDCFwrghasGSHSNQHQMKEY----- >UniRef50_C7YR61(232-280:846) Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YR61_NECH7 E=0.0002 s/c=0.97 id=33% cov=83% ----FAVCCNSCEQTIPdVHYHCSTCDdgDFDLCQSCIDQgitcHGKDHWLIK------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2867 0 0 Q 2 * * * 3274 * * * * * * * 3656 * 1021 2534 2718 * * * * 2 0 * * * * * * 3511 0 0 D 3 4087 * 1490 3929 * 2990 * * * * * 4029 * * 2966 2290 * * * * 3 0 * * * * * * 3796 0 0 R 4 2862 3868 * 1745 * * * * 2250 * * 4217 4232 * 3171 * * * 3891 * 4 0 * * * * * * 3994 0 0 F 5 4247 * * * 900 * * * * 2504 * * * 4526 * * * 4501 * 2759 5 144 4477 4316 0 * * * 4408 1000 0 V 6 2298 * * * * 4749 * 4849 * 3033 3152 * * 4980 * * * 1398 4407 4976 6 70 5470 5341 0 * * 0 4599 1000 1000 Y 7 3102 * * * 2339 * 5656 4330 * * * * * 3933 4175 5502 4956 4605 5035 1436 7 61 5667 5543 2000 415 * 0 4770 1000 1587 T 8 4032 3923 * 4318 * * 4178 4895 6048 4630 * 5872 * 4258 5409 2244 1646 4726 * 5862 8 46 4999 * 1136 876 0 * 4866 1462 1894 C 9 * 0 * * * * * * * * * * * * * * * * * * 9 0 * * * * * * 5210 0 0 N 10 4769 * 1109 * * 6198 5137 * 6619 * 6751 1584 * 6198 * 3861 5498 * * * 10 0 * * * * * * 5210 0 0 E 11 3467 4399 * 5734 4849 1664 4658 3954 5716 4963 * 3161 * 6012 * 4516 5541 3405 * 4295 11 0 * * * * * * 5210 0 0 C 12 * 0 * * * * * * * * * * * * * * * * * * 12 83 4159 * 1333 730 * * 5210 2507 0 K 13 6423 6788 4514 3760 * 2789 5213 * 2618 4026 5408 3412 * 3358 3739 3165 5244 4715 * * 13 29 5642 * 1261 779 * * 5210 1592 0 H 14 2955 5413 * 3350 * 5306 5788 6611 3238 5333 4277 4799 6725 2565 3299 4140 3204 4950 * * 14 11 7024 * 1000 1000 * * 5210 1000 0 H 15 5096 5172 2962 2681 3574 5603 4730 5847 6012 4684 5999 4361 3990 4201 4652 3915 3547 4300 * 5590 15 299 2479 6968 628 1502 * * 5210 3287 0 V 16 6335 5413 6585 * * 6634 * 1425 6707 2604 5766 5874 2211 * 6894 * 4472 3645 * 6338 16 805 1225 * 716 1353 * 0 5208 4725 1000 E 17 6578 * * 3389 6585 924 4676 3744 4435 5020 * * 5736 * 4827 4404 5465 * 4580 * 17 233 2869 6335 627 1504 0 * 5208 3366 1000 T 18 3953 6706 5019 4989 3779 5760 6002 3199 4117 5009 6619 3849 3467 5677 3975 3846 3648 2984 * 5047 18 152 3325 * 1123 886 * 0 5206 2998 1000 R 19 * 5688 * 6102 4318 4251 4632 * 6576 5818 * * * 6618 472 * 6464 4865 * 5794 19 47 4959 * 699 1381 0 * 5227 1978 1000 W 20 * * * * 2135 * 4425 4648 * * 6163 * * * * * * 5048 2458 1121 20 53 4785 * 0 * * * 5253 2167 0 H 21 6951 6689 5825 5347 * * 1824 * 1748 * * 4583 * 4506 2218 5822 5634 6629 6480 * 21 27 5740 * 1000 1000 * * 5253 1495 0 C 22 5215 109 * * * * * * * * * * * * * 4439 * * * * 22 0 * * * * * * 5253 0 0 T 23 3152 * 5525 3801 4870 * 5998 4983 4934 2388 6583 3408 5556 3254 4625 3433 4064 4260 6277 * 23 15 6583 * 1000 1000 * * 5253 1000 0 V 24 * * 3395 3212 * 5816 * 4499 3903 5215 5555 4242 * 3860 5361 3948 2341 2239 * * 24 0 * * * * * * 5253 0 0 C 25 * 145 * * * * 5939 * 5069 * * * * 5456 * * 5215 * * * 25 15 6629 * 2322 322 * * 5253 1000 0 E 26 3996 * 2791 2702 4487 4720 5282 4983 5751 5437 5573 6758 2421 4985 4395 4849 5769 4173 6377 4606 26 22 6020 * 1000 1000 * * 5253 1450 0 D 27 6086 * 659 4322 * 5026 * * 6303 * * 2176 * 6132 * 6316 * 6580 * * 27 0 * * * * * * 5253 0 0 Y 28 * 6831 * * 1171 * 6660 6234 * * 6128 * * * * * 6894 5139 4718 1201 28 0 * * * * * * 5253 0 0 D 29 * * 362 4401 * * 5464 * * 6291 * 4281 * 5854 * 6234 4350 6961 * * 29 0 * * * * * * 5253 0 0 L 30 6084 * * * 5114 * * 3778 * 532 4612 * 6703 5256 * * * 3944 * 4311 30 0 * * * * * * 5253 0 0 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 5253 0 0 I 32 4185 6767 3063 2334 4869 5735 5986 5598 4220 4128 6605 5112 4433 2730 5455 3713 4454 5459 * 6163 32 0 * * * * * * 5253 0 0 N 33 3398 6132 3297 2847 * 4528 6326 6970 3407 6905 5776 3954 4815 5085 4702 2517 3782 5469 * 5178 33 13 6751 * 1000 1000 * * 5253 1000 0 C 34 * 0 * * * * * * * * * * * * * * * * * * 34 23 6827 7146 0 * * * 5253 1000 0 Y 35 6504 * 6149 3186 1956 * 3426 5117 4181 6715 6610 * * * 5313 6326 * 4314 * 1632 35 152 3320 * 2037 403 0 * 5385 3025 1000 N 36 3353 6768 3184 4391 5741 3793 6573 5162 4078 4514 6447 3871 3715 4113 4107 2810 4275 4757 * * 36 90 4040 * 2462 289 * * 5325 2587 0 T 37 3805 * 5085 4323 * 4552 * 6557 2079 4093 * 3014 5507 4719 3697 3003 3469 5346 * * 37 105 3992 7034 1962 428 * * 5309 2632 0 K 38 4520 5322 3867 3677 6606 2440 3633 6078 3636 6889 5075 4974 3703 4613 4153 3941 4029 4501 * * 38 83 4169 * 1727 519 * 0 5191 2454 1000 S 39 4388 * 4806 4885 6026 2480 4749 4500 3012 6145 * 3129 * 5362 4346 2996 3750 3625 * * 39 94 3990 * 1562 597 * 0 5187 2517 1000 H 40 * 5533 * 4550 6268 * 738 5989 3841 * * 3216 6517 6291 4496 * * * * 4012 40 289 2462 * 886 1124 0 * 5177 3512 1000 T 41 * * 3186 2532 * 3991 5403 4218 5258 4813 * 4054 2556 3799 5748 3260 4175 4841 * * 41 209 2890 * 1439 664 * * 5176 3201 0 H 42 * * * 5910 * * 157 * * * 5873 5155 * * * * * * * 4591 42 0 * * * * * * 5174 0 0 K 43 3891 * 5905 3011 * * 5983 6019 3358 6255 5846 6089 1353 4224 3900 4585 5831 5558 5297 * 43 61 4599 * 1607 574 * * 5081 1875 0 M 44 5798 * * * 2127 * 5449 * 5555 1936 1507 * * 5939 * * * 5902 * 3993 44 51 4841 * 2671 246 * * 4872 1561 0 V 45 4814 * 4903 3200 * * 5295 4022 3606 3922 3617 5685 * 5782 5677 5966 3533 1613 * 5705 45 0 * * * * * * 4861 0 0 K 46 3992 * * 3810 * * * * 1212 * 5746 4121 * 5118 1737 * 5095 * * * 46 0 * * * * * * 4853 0 0 W 47 * * * * * * * 1181 * 2353 3451 * * 5169 * 5369 5270 5813 4415 2951 47 0 * * * * * * 4800 0 0 G 48 * 3752 4013 3799 * 1522 * * 3861 * * 3897 3036 * * 2428 * * * * 48 0 * * * * * * 3897 0 0 L 49 * * * * 2209 * * 2734 * 2586 * * * * * 3854 3724 2099 * 3499 49 0 * * * * * * 3780 0 0 G 50 3499 * 2730 2148 * 2119 * * * * * * 2083 * * 3859 * * * * 50 0 * * * * * * 3780 0 0 L 51 * 3110 * * * * * 3266 * 755 3456 * * * * * * 3374 * * 51 0 * * * * * * 3402 0 0 D 52 * * 347 2225 * * * * * * * * * * * * * * * * 52 0 * * 0 * * * 2576 0 0 //