HHsearch 1.5
NAME  c1t2yA_
FAM   
FILE  c1t2yA_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c1t2yA_.a3m 
DATE  Wed Jan  9 19:04:42 2013
LENG  26 match states, 26 columns in multiple alignment
FILT  1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.5022  2.4718 
SEQ
>ss_dssp
CCCSCSSTTTCCCSSSCCSSTTSCC-
>sa_dssp
EDEEBECDEDCDDDEEBEEEEBCEE-
>ss_pred
CCCCCCCCCCCCCCCCCCHHCCCCCC
>ss_conf
95546775646666886210155679
>Consensus
gdcgcsgasscncgsgcscsncgskx
>c1t2yA_
GDCGCSGASSCNCGSGCSCSNCGSKX
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
G 1    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

D 2    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

C 3    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

G 4    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

C 5    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

S 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

G 7    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

A 8    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

S 9    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

S 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

C 11   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

N 12   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

C 13   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

G 14   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

S 15   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

G 16   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

C 17   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

S 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	18
       0	*	*	*	*	*	*	1000	0	0	

C 19   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

S 20   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

N 21   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

C 22   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

G 23   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1000	0	0	

S 24   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	24
       0	*	*	*	*	*	*	1000	0	0	

K 25   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1000	0	0	

X 26   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	26
       0	*	*	0	*	*	*	1000	0	0	

//