HHsearch 1.5 NAME c1nybA_ FAM FILE c1nybA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1nybA_.a3m DATE Tue Mar 9 23:22:55 2010 LENG 26 match states, 26 columns in multiple alignment FILT 1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.5397 3.4119 SEQ >ss_dssp CCCCSHHHHHHHHHHHHHTTCC---- >sa_dssp EEEEEEEDEDEDEEDEEEDEEE---- >ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC >ss_conf 96313577778899999997652279 >Consensus eskgtaksrykarraeliaerrxxxx >c1nybA_ ESKGTAKSRYKARRAELIAERRXXXX # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 0 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1000 0 0 K 3 * * * * * * * * 0 * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 G 4 * * * * * 0 * * * * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 T 5 * * * * * * * * * * * * * * * * 0 * * * 5 0 * * * * * * 1000 0 0 A 6 0 * * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 K 7 * * * * * * * * 0 * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 S 8 * * * * * * * * * * * * * * * 0 * * * * 8 0 * * * * * * 1000 0 0 R 9 * * * * * * * * * * * * * * 0 * * * * * 9 0 * * * * * * 1000 0 0 Y 10 * * * * * * * * * * * * * * * * * * * 0 10 0 * * * * * * 1000 0 0 K 11 * * * * * * * * 0 * * * * * * * * * * * 11 0 * * * * * * 1000 0 0 A 12 0 * * * * * * * * * * * * * * * * * * * 12 0 * * * * * * 1000 0 0 R 13 * * * * * * * * * * * * * * 0 * * * * * 13 0 * * * * * * 1000 0 0 R 14 * * * * * * * * * * * * * * 0 * * * * * 14 0 * * * * * * 1000 0 0 A 15 0 * * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 E 16 * * * 0 * * * * * * * * * * * * * * * * 16 0 * * * * * * 1000 0 0 L 17 * * * * * * * * * 0 * * * * * * * * * * 17 0 * * * * * * 1000 0 0 I 18 * * * * * * * 0 * * * * * * * * * * * * 18 0 * * * * * * 1000 0 0 A 19 0 * * * * * * * * * * * * * * * * * * * 19 0 * * * * * * 1000 0 0 E 20 * * * 0 * * * * * * * * * * * * * * * * 20 0 * * * * * * 1000 0 0 R 21 * * * * * * * * * * * * * * 0 * * * * * 21 0 * * * * * * 1000 0 0 R 22 * * * * * * * * * * * * * * 0 * * * * * 22 0 * * * * * * 1000 0 0 X 23 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 23 * * * * * * * 1000 0 0 X 24 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 24 * * * * * * * 1000 0 0 X 25 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 25 * * * * * * * 1000 0 0 X 26 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 26 0 * * 0 * * * 1000 0 0 //