HHsearch 1.5
NAME  c1nwdC_
FAM   
FILE  c1nwdC_
COM   /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1nwdC_.a3m 
DATE  Wed Mar 10 03:58:49 2010
LENG  28 match states, 28 columns in multiple alignment
FILT  1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.4794  2.3208 
SEQ
>ss_dssp
CCCSCCHHHHHHHHHHHHHHHHHHHCCC
>sa_dssp
EEEEEEEEDEEEDDDDDEEDEEDEEEEE
>ss_pred
CCCCCCCHHHHHHHHHHHHHHHHHHHCC
>ss_conf
9854341256799899999999877419
>Consensus
gshkktdsevqlemitawkkfveekkkk
>c1nwdC_
GSHKKTDSEVQLEMITAWKKFVEEKKKK
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
G 1    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

S 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

H 3    *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

K 4    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

K 5    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

T 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

D 7    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

S 8    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

E 9    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

V 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

Q 11   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

L 12   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

E 13   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

M 14   *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

I 15   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

T 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

A 17   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

W 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	18
       0	*	*	*	*	*	*	1000	0	0	

K 19   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

K 20   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

F 21   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

V 22   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

E 23   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1000	0	0	

E 24   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1000	0	0	

K 25   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1000	0	0	

K 26   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1000	0	0	

K 27   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1000	0	0	

K 28   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	28
       0	*	*	0	*	*	*	1000	0	0	

//