HHsearch 1.5 NAME c1nh2C_ FAM FILE c1nh2C_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1nh2C_.a3m DATE Fri Mar 12 06:19:03 2010 LENG 50 match states, 50 columns in multiple alignment FILT 56 out of 60 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.1 EVD 0.4206 0.6728 SEQ >ss_dssp CCCCCCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEECC >sa_dssp EEEEEEDDEDEEEEDDEEECDDDCCCCDBDBCDEEEEEECEECEDEDEEE >ss_pred CCCCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCEEEEEEEEEEEEEEC >ss_conf 96525399999968860064589998614999888886644100468569 >Consensus xfxxxnxvlcxydKVxRxknKWKcxlKdGimxingkdyxFxkaxGExeWx >c1nh2C_ DYLIENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEWV >UniRef50_B7Q5G2(255-303:303) Tfiia large subunit, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7Q5G2_IXOSC E=6e-08 s/c=1.19 id=44% cov=100% NFEIDNVVVCQYDKISRSRNRWKFHFKDGIMNLQGKDYVFQKAVGDAEW- >UniRef50_B6QAX6(318-366:366) Transcription factor TFIIA complex subunit Toa1, putative n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QAX6_PENMQ E=4e-18 s/c=1.89 id=48% cov=100% DEAVGEVMLCTYDKVQRVKNKWKCTLKDGILSTGGKEYVFHKGQGEFEW- >UniRef50_Q98S40(220-266:266) Putative uncharacterized protein orf266 n=1 Tax=Guillardia theta RepID=Q98S40_GUITH E=0.0003 s/c=0.99 id=31% cov=90% -----NFIVSMVEKIYRRNTKWRVILKDGVICINDKEMFFNFCKCELFW- >UniRef50_B7XHS9(98-144:144) Transcription initiation factor IIA large chain n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XHS9_ENTBH E=3e-08 s/c=1.26 id=39% cov=92% ----QSYFICLFVKVIKSKGKWKCIFKDGFINIDGReDQPFNNASGELEW- >UniRef50_C1FDH3(114-157:157) Transcription factor IIA, alpha/beta subunit n=1 Tax=Micromonas sp. RCC299 RepID=C1FDH3_9CHLO E=1e-10 s/c=1.54 id=42% cov=90% -----NLILAQFEKVARAKSKWKCVLKEGVMTLENRDILFGRGNGEFRW- >UniRef50_C4V9G0(86-132:132) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9G0_NOSCE E=3e-10 s/c=1.41 id=44% cov=90% -----NFLMCMYVKVSRTKCKYKCNFKQGFVNLGNVDFAFANAQGELEW- >UniRef50_Q9FIF4(139-186:186) Genomic DNA, chromosome 5, P1 clone:MNC17 n=1 Tax=Arabidopsis thaliana RepID=Q9FIF4_ARATH E=2e-12 s/c=1.54 id=34% cov=94% ---IQHLVMCQFDKVKRSKNKWECKFNAGVMQINGKNVLFSQATGDFNF- >UniRef50_A9UTS8(110-158:158) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UTS8_MONBE E=3e-11 s/c=1.42 id=40% cov=100% SFHTANSLLCFYDRVSKTKGAYKCALRNAVLTVDRKSYVFSKIQAELKW- >UniRef50_A7AVV9(127-179:179) DNA-directed RNA polymerase II large subunit, putative n=1 Tax=Babesia bovis RepID=A7AVV9_BABBO E=2e-07 s/c=1.07 id=27% cov=96% --ETKDIVIGIIDKISRPSTKkttaptWKVKLKYGILQINGVEIPFDNLEGEFEF- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 1057 * * * * * * * * 2646 * * * 1476 * * * * 1 0 * * * * * * 2301 0 0 Y 2 * * * 3536 379 * * * * * 3826 * * * * * * * * 3755 2 0 * * * * * * 2433 0 0 L 3 4204 * 1881 1377 * * 2918 4113 * 4153 * 4546 * * * * * * * * 3 0 * * * * * * 2765 0 0 I 4 3602 5065 * * * * * 2054 * 5010 4753 * * * * 5053 1101 3597 * * 4 0 * * * * * * 2843 0 0 E 5 3536 * 2069 2253 * 2300 * * 3718 * * * * 2421 * * * * * * 5 0 * * * * * * 2983 0 0 N 6 * * 2958 6016 * * 2852 * * * * 691 * 3996 * 4828 * * * * 6 0 * * * * * * 3152 0 0 L 7 * 5118 * * 2736 * * 2136 * 2263 6404 * * 6319 * 4032 5220 2163 * 4330 7 0 * * * * * * 3147 0 0 M 8 5584 * * * 4889 * * 2077 * 3498 2356 * * * * * * 1236 * * 8 0 * * * * * * 3147 0 0 L 9 * * * * 4881 * * 3595 * 920 3209 * * * * * * 2020 * * 9 0 * * * * * * 3147 0 0 C 10 2741 445 * * * 4351 * * * * * * * * * 3903 * * * * 10 0 * * * * * * 3147 0 0 L 11 * * * * 4032 * * 3540 * 2074 3478 * * 1284 * * 3839 4468 * * 11 0 * * * * * * 3147 0 0 Y 12 * * * * 1972 * * 4351 * * * * * * * * 4759 4502 * 701 12 0 * * * * * * 3147 0 0 D 13 * * 603 1990 * * * * * * * * * * * * * 3475 * * 13 0 * * * * * * 3147 0 0 K 14 * * * * * * * * 176 * * * * * 3123 * * * * * 14 14 6685 * 3459 138 * * 3147 1000 0 V 15 * * * * * * * 1835 * * * * * * * * * 474 * * 15 0 * * * * * * 3147 0 0 T 16 5010 * * * * 4706 2979 4385 4586 5043 * 3591 * 2520 * 2434 2639 * * 3625 16 23 * 6005 * * * * 3147 0 0 R 17 * * * * * * 5762 * 3391 * 5104 * * * 222 * * * * * 17 0 * * * * 0 * 3148 0 1000 T 18 3164 * * * * * 4946 4218 * * * 5306 4351 * 3625 2170 2248 2223 * * 18 0 * * * * * * 3147 0 0 K 19 * * * * * * * * 487 * * 3625 * * 2675 4351 * * * * 19 0 * * * * * * 3147 0 0 A 20 4973 4618 * * * 3016 * * * * * 908 * * * 3159 2653 * * * 20 0 * * * * * * 3147 0 0 R 21 4032 * * * * * * * 377 * * 5220 * * 2815 * * * * * 21 73 4351 * 2585 263 * * 3147 1000 0 W 22 * * * * * * * * * * * * * * 4391 * * * 211 3498 22 0 * * * * * * 3147 0 0 K 23 * * * 4586 * * * * 212 * * * * * 3393 * * * * * 23 0 * * * * * * 3147 0 0 C 24 * 815 * * 2229 * * 4759 * 4704 * * * * * 4979 5766 3424 * * 24 0 * * * * * * 3147 0 0 S 25 3576 * * * * * 3720 3455 3464 * * 2941 * 5299 * 4589 1982 3014 * 3567 25 0 * * * * * * 3147 0 0 L 26 * * * * 1916 * * * * 480 5779 * * * * * * * * * 26 0 * * * * * * 3147 0 0 K 27 * * * * * * * * 356 * * 4586 * * 2680 * * 5584 * * 27 0 * * * * * * 3147 0 0 D 28 4001 6134 570 4132 * * * * 6255 * * 4032 * 4154 * * * 6228 * 4351 28 0 * * * * * * 3147 0 0 G 29 4032 * * * * 91 * * * * * * * * * * * * * * 29 0 * * * * * * 3147 0 0 V 30 * * * * 3475 * * 1008 * 5725 4881 * * * * * * 1474 * * 30 0 * * * * * * 3147 0 0 V 31 3541 * * * * * * 2830 * 2107 1284 * * * * * * 2934 * * 31 0 * * * * * * 3147 0 0 T 32 * 3437 * * * 5088 2239 * * 5459 * 1955 * 3464 * 3600 2233 * * * 32 0 * * * * * * 3147 0 0 I 33 * * * * 5425 * * 1297 * 1697 6024 * * * * 5406 5025 2479 * 6335 33 0 * * * * * * 3147 0 0 N 34 * * 2420 5754 * 2690 * * * * * 825 * 6224 5252 4806 * * * * 34 0 * * * * * * 3147 0 0 R 35 * * 4215 4759 * 775 4956 * 5094 * * 2800 * * 3062 * * * * * 35 0 * * * * * * 3147 0 0 N 36 * * * * * * * 5118 637 * * 5086 * 6148 2533 * 5459 3710 * 6267 36 50 4889 * 0 * * * 3147 1000 0 D 37 * * 522 2315 * * * * * * * 4586 * * * 4032 * * * * 37 0 * * * * * * 3147 0 0 Y 38 * * * * 3641 * 5164 3018 * 4314 4502 * * 4889 * * 5584 3931 * 852 38 0 * * * * * * 3147 0 0 T 39 4115 4676 * * 4502 * * 5311 * 1722 * * 3595 * * * 4405 1319 * * 39 0 * * * * * * 3147 0 0 F 40 * * * * 0 * * * * * * * * * * * * * * * 40 0 * * * * * * 3147 0 0 Q 41 3856 * 4351 * 5088 3623 2939 * * * * 2098 * 2129 * 2583 * 6397 * * 41 0 * * * * * * 3147 0 0 K 42 * * * * 4502 * * * 649 * * 3182 * 4586 3312 3927 * * * * 42 0 * * * * * * 3147 0 0 A 43 738 2569 * * * 4122 * 4031 * 3975 * * * * * 4334 * * * * 43 0 * * * * * * 3150 0 0 Q 44 * * * 4347 * * * 5427 3592 * * 2349 * 2269 * 3527 1672 4636 * * 44 0 * * * * * * 3150 0 0 V 45 3321 3592 * * * 351 * * * * * * * * * * * 4924 * * 45 0 * * * * * * 3150 0 0 E 46 * * 2376 309 * * * * * * * * * * * * * * * * 46 0 * * * * * * 3151 0 0 A 47 2161 5263 * * 1462 * * * * 2216 5561 * * * * 3319 5698 * * 4988 47 0 * * * * * * 3151 0 0 E 48 * * 4323 543 3585 * * 5561 4018 4775 * 4574 * * 5716 * * * * * 48 0 * * * * * * 3151 0 0 W 49 * * * * 2577 * * * * * * * * * * * * * 265 * 49 0 * * * * * * 3151 0 0 V 50 * * * * * * * 989 * * * * * * * * * 1011 * * 50 0 * * 0 * * * 1402 0 0 //