HHsearch 1.5 NAME c1mm0A_ FAM FILE c1mm0A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1mm0A_.a3m DATE Thu Jan 10 03:48:08 2013 LENG 36 match states, 36 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.3 EVD 0.4807 2.5564 SEQ >ss_dssp CCCHHHHHHHHHHHSCTTEEEEEEETTEEEEEECCC >sa_dssp EDEEEDBCDDAEEECEEDCEEACCCEEDDCCDDDEE >ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC >ss_conf 972778776322211122333221677368888349 >Consensus acxxxxcwaxcqaqhxxyfrraxcxxsxckcxfxxg >c1mm0A_ ACNFQSCWATCQAQHSIYFRRAFCDRSQCKCVFVRG >UniRef50_C9W4F5(26-61:74) Termicin n=57 Tax=Isoptera RepID=C9W4F5_9NEOP E=0.0001 s/c=1.33 id=59% cov=103% ACYMRQCWANCQAQHGRYFRRAYCQGSVCKCAFNNG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1309 0 0 C 2 * 0 * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1309 0 0 N 3 * * * * * * * * * * * 1000 * * * * * * * 1000 3 0 * * * * * * 1309 0 0 F 4 * * * * 1000 * * * * * 1000 * * * * * * * * * 4 0 * * * * * * 1309 0 0 Q 5 * * * * * * * * * * * * * 1000 1000 * * * * * 5 0 * * * * * * 1309 0 0 S 6 * * * * * * * * * * * * * 1000 * 1000 * * * * 6 0 * * * * * * 1309 0 0 C 7 * 0 * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1309 0 0 W 8 * * * * * * * * * * * * * * * * * * 0 * 8 0 * * * * * * 1309 0 0 A 9 0 * * * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1309 0 0 T 10 * * * * * * * * * * * 1000 * * * * 1000 * * * 10 0 * * * * * * 1309 0 0 C 11 * 0 * * * * * * * * * * * * * * * * * * 11 0 * * * * * * 1309 0 0 Q 12 * * * * * * * * * * * * * 0 * * * * * * 12 0 * * * * * * 1309 0 0 A 13 0 * * * * * * * * * * * * * * * * * * * 13 0 * * * * * * 1309 0 0 Q 14 * * * * * * * * * * * * * 0 * * * * * * 14 0 * * * * * * 1309 0 0 H 15 * * * * * * 0 * * * * * * * * * * * * * 15 0 * * * * * * 1309 0 0 S 16 * * * * * 1000 * * * * * * * * * 1000 * * * * 16 0 * * * * * * 1309 0 0 I 17 * * * * * * * 1000 * * * * * * 1000 * * * * * 17 0 * * * * * * 1309 0 0 Y 18 * * * * * * * * * * * * * * * * * * * 0 18 0 * * * * * * 1309 0 0 F 19 * * * * 0 * * * * * * * * * * * * * * * 19 0 * * * * * * 1309 0 0 R 20 * * * * * * * * * * * * * * 0 * * * * * 20 0 * * * * * * 1309 0 0 R 21 * * * * * * * * * * * * * * 0 * * * * * 21 0 * * * * * * 1309 0 0 A 22 0 * * * * * * * * * * * * * * * * * * * 22 0 * * * * * * 1309 0 0 F 23 * * * * 1000 * * * * * * * * * * * * * * 1000 23 0 * * * * * * 1309 0 0 C 24 * 0 * * * * * * * * * * * * * * * * * * 24 0 * * * * * * 1309 0 0 D 25 * * 1000 * * * * * * * * * * 1000 * * * * * * 25 0 * * * * * * 1309 0 0 R 26 * * * * * 1000 * * * * * * * * 1000 * * * * * 26 0 * * * * * * 1309 0 0 S 27 * * * * * * * * * * * * * * * 0 * * * * 27 0 * * * * * * 1309 0 0 Q 28 * * * * * * * * * * * * * 1000 * * * 1000 * * 28 0 * * * * * * 1309 0 0 C 29 * 0 * * * * * * * * * * * * * * * * * * 29 0 * * * * * * 1309 0 0 K 30 * * * * * * * * 0 * * * * * * * * * * * 30 0 * * * * * * 1309 0 0 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1309 0 0 V 32 1000 * * * * * * * * * * * * * * * * 1000 * * 32 0 * * * * * * 1309 0 0 F 33 * * * * 0 * * * * * * * * * * * * * * * 33 0 * * * * * * 1309 0 0 V 34 * * * * * * * * * * * 1000 * * * * * 1000 * * 34 0 * * * * * * 1309 0 0 R 35 * * * * * * * * * * * 1000 * * 1000 * * * * * 35 0 * * * * * * 1309 0 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * 0 * * * 1309 0 0 //