HHsearch 1.5 NAME c1llmC_ FAM FILE c1llmC_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1llmC_.a3m DATE Tue Mar 9 16:22:31 2010 LENG 87 match states, 87 columns in multiple alignment FILT 127 out of 19367 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 9.5 EVD 0.4887 -0.2376 SEQ >ss_dssp CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC >sa_dssp EEDDCAEEDDEDBDDDDDCDCCDCEDEEDEDCDBEDDDEDBCDDCDCEDCCDEECCDCDEEEDEEDDEDDDEEEECEDDEDDEEEEE >ss_pred CCCEECCCCCCEECCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHCCCCCCHHHHHHHHHHHCCCCCC >ss_conf 985888658776546867602242010112232222332111111112222233233100001154016889999999974233689 >Consensus xkpxxCxxCxxxfxxxxxlxxHxxxhxxxxxxxCxxCxxxfxxxxxlxxHxxxhxxxxxxCxxCxxxfxxxxxlxxHxxxxxxxtge >c1llmC_ MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKLVGE >UniRef50_B4JJM0(157-227:269) GH12511 n=1 Tax=Drosophila grimshawi RepID=B4JJM0_DROGR E=2e-05 s/c=0.71 id=20% cov=82% ----RCPVCILKLCCASSLKRHMIIHTGLKPYSCPQREKCLEQKINLQQHIgEPRHKCHLYKWSSNQVMDLSRHL------------- >UniRef50_UPI00015B5AA1(465-547:560) PREDICTED: similar to zinc finger protein 184 (Kruppel-like) (predicted) n=1 Tax=Nasonia vitripennis RepID=UPI00015B5AA1 E=0.0007 s/c=0.54 id=20% cov=93% ---YECENCGRCFSFFGDVNEHRKTCGQEPRYECEICFFKTRYKYNLRNHMFKIHnenRKNFVCQDCGMQYKTARTMKKHMDRCEK---- >UniRef50_Q86UD4(145-228:541) Zinc finger protein 329 n=11 Tax=Eutheria RepID=ZN329_HUMAN E=9e-07 s/c=0.65 id=14% cov=97% -KPYKYPESVKSFNHFTSLGHQKIMKRGKKSYEGKNFENIFTLSSSLNENQRnLPGEKQYRCTECGKCFKRNSSLVLH---HRTHTGE >UniRef50_B0W6F4(51-133:625) Zinc finger protein 90 n=3 Tax=Culicidae RepID=B0W6F4_CULQU E=0.0007 s/c=0.54 id=16% cov=92% ----TCHKCRRMFETKVEFEFHYRKAYNQEPvYACGQCDKQILQYKAYRLHCYRHSnsaTQRYTCAVCAKVFHQKSDLTRHEAIHET---- >UniRef50_Q176A5(381-459:614) B-cell lymphoma/leukaemia 11A extra long form, putative n=1 Tax=Aedes aegypti RepID=Q176A5_AEDAE E=0.001 s/c=0.57 id=20% cov=87% ---YICGVCSAKYSRIDYVKQHLLSHLRSFPCPFAGCGCEYTSSARLGLHISSKHIeyETHQCQHCGeKSFVSKAELQQHL--------- >UniRef50_B7Z141(711-802:2108) CG9817, isoform B n=7 Tax=Endopterygota RepID=B7Z141_DROME E=1e-11 s/c=0.77 id=16% cov=101% LRDFQCKLCSKLLGSRAALQRHSKEVHSRNSTVvsCPRCQKLFQNRSNLKIHMLTHsGVRPFKCaePECNAAFTTKQCLQFHYKKVHNYTQE >UniRef50_UPI000179ECBC(8-95:580) UPI000179ECBC related cluster n=1 Tax=Bos taurus RepID=UPI000179ECBC E=3e-07 s/c=0.64 id=20% cov=99% FKPgkYYCDKCRFSTKDPLQYKKH-TLQHEEIKFVCSHCGCISYTKGEFQRHLVKHTGVfPYRCEYCDYGAIRNDYIVKHRRRVHEKTG- >UniRef50_Q4SSL1(179-279:948) Chromosome 15 SCAF14367, whole genome shotgun sequence. (Fragment) n=5 Tax=Tetraodontidae RepID=Q4SSL1_TETNG E=9e-06 s/c=0.51 id=18% cov=94% --PFVCQECGQSFRQSSLLIEHVSIHQEKRERLGDEvknskkrevktkrlfcpqCPFDTTCPNTFVQHAKTHEkdKKNFKCDKCSFRTLNENDLRRHTIM QHT---- >UniRef50_B6HSJ8(302-376:448) Pc22g25600 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HSJ8_PENCW E=0.0008 s/c=0.60 id=20% cov=82% ------------FNRGCDLRKHFNRHRKYLFCRYEGCPQSarngFSSKKDRARHEAKHNPGVLCEWEgCAKVFSRVDNMKDHAKRKK----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * 2841 * * 2338 * 2235 2767 * * * * * * 1720 * * 1 0 * * * * * * 5427 0 0 K 2 * * * * * * * * 657 * * * * * 1452 * * * * * 2 0 * * * * * * 7989 0 0 P 3 * * 4808 5996 * 5397 * 4794 3787 4157 * * 679 4915 3948 * 5715 5735 * * 3 23 5975 * 1000 1000 * * 8632 1000 0 F 4 * * * * 1492 * 2375 * 6272 5620 * * * 5763 6592 * * 6469 6465 1446 4 0 * * * * * * 9397 0 0 Q 5 4829 * 5470 2820 5174 * 5615 5185 1999 5121 5365 6793 5523 3303 3707 4687 3420 4201 6742 5858 5 0 * * * * * * 9629 0 0 C 6 * 65 * * 5834 * * * * * * * * * * * * * * 5244 6 0 * * * * * * 9761 0 0 R 7 5982 * 2569 3092 6707 4924 4335 6969 3068 5428 5689 5481 3043 4254 5604 3144 3605 5989 * 6833 7 10 7222 * 0 * * * 9761 1000 0 I 8 5256 * 3980 3324 4610 6889 3511 3151 3974 3301 5783 5799 6969 4164 6642 6037 3276 3140 * 4211 8 25 5887 * 1000 1000 * * 9761 1712 0 C 9 * 77 * * * * 6335 * * * * * * * * 5244 * * * 6212 9 0 * * * * * * 9761 0 0 M 10 6107 * 3794 4049 * 1468 5875 * 4162 6860 7199 3479 3761 4584 4220 3807 5434 5997 6898 5274 10 12 6969 * 0 * * * 9736 1000 0 R 11 4390 5640 * 3336 3878 7102 6860 6880 1716 5378 4937 4590 6713 4665 3062 4658 5390 4506 * 4006 11 26 * 5819 * * * * 9736 0 0 N 12 3843 5887 6519 5333 6908 3836 6895 4826 3965 5210 4939 5462 5309 4158 3409 2470 3008 3294 7012 5691 12 0 * * * * 0 * 9716 0 1000 F 13 5411 5014 * * 769 * 6946 5667 * 3455 * 6990 6810 6006 * 4623 3746 * * 3437 13 11 7071 * 1000 1000 * * 9742 1000 0 S 14 3588 6327 5513 4655 5446 4501 5320 5024 2962 5147 * 3645 3990 4099 3515 2801 3177 5600 * * 14 0 * * * * * * 9747 0 0 R 15 5867 * 3739 4904 5941 7286 4009 5447 4324 4539 * 3101 * 3697 2782 2373 3094 7045 6863 6878 15 12 6914 * 0 * * * 9747 1000 0 S 16 5249 * 6818 4110 4413 7135 4551 5088 2342 4280 5356 4524 3861 4216 2658 3341 6919 4149 * 5664 16 0 * * * * * * 9747 0 0 D 17 4027 5407 5496 4804 6014 3677 3954 5433 4449 5370 6072 4269 5214 4637 4439 2101 3714 4728 5400 4179 17 13 6796 * 1000 1000 * * 9747 1000 0 H 18 3524 6520 3593 4376 5813 5966 3341 6678 5858 4167 * 3280 5433 3934 3941 2542 4069 6923 6327 4397 18 0 * * * * * * 9747 0 0 L 19 5878 6539 * * 3954 * 5925 4396 * 739 3783 * * 6868 5359 6253 * 4308 4440 5099 19 0 * * * * * * 9747 0 0 T 20 4947 * 5403 5002 5925 5392 6866 4099 2362 4295 * 4223 * 3034 2968 3644 3843 3997 5104 6038 20 0 * * * * * * 9747 0 0 T 21 4264 6921 5435 4356 * 5883 4655 4995 3042 3687 7053 5449 * 3398 2097 4419 4371 3844 * 4132 21 0 * * * * * * 9747 0 0 H 22 * 5925 * * * * 84 * * 6651 * * * 5054 * * * * * * 22 42 5917 6354 1012 989 * * 9747 1732 0 I 23 5947 * * 3662 5982 * * 3629 3865 2557 2780 4920 * 3255 4648 4581 4890 3064 5233 5341 23 79 4456 7059 1116 892 0 * 9749 3674 1667 R 24 4092 * 5796 4022 5934 5046 4160 4050 2707 3696 6192 4743 * 4173 2536 4991 3752 3898 6697 7098 24 11 7057 * 0 * * 0 9743 1000 1000 T 25 3513 6857 7151 4935 4940 * 4665 2798 3868 4128 4478 5283 * 5110 3555 3441 2751 4602 5922 4658 25 47 4971 * 296 2431 0 * 9743 2792 1000 H 26 6539 4131 5234 4979 6558 7007 859 * 4207 5401 * 6916 * 4444 6914 4854 4369 4853 6875 4732 26 84 5313 5004 2679 245 * * 9747 2314 0 T 27 5023 4817 4872 4396 6976 5677 2378 6770 3410 3791 4994 3678 5228 5038 4835 3974 2794 5519 5773 7129 27 13 6844 * 2000 415 415 2000 9714 1000 2928 G 28 4295 * 3855 3744 5788 2275 3766 6815 3766 5420 5437 3052 4341 4308 3577 4899 6677 5387 7165 * 28 9 7313 * 1585 585 0 * 9736 1000 1000 E 29 5284 6504 3999 2378 7258 3402 5799 4397 3701 4977 7028 4058 3603 3915 4279 4328 4019 5230 5857 6649 29 153 3423 7019 1841 472 * * 9747 5392 0 K 30 5024 6908 5865 3299 6177 4824 6666 5403 1871 7082 5699 5012 4130 4051 2511 5468 4635 4895 7147 4962 30 68 4970 6122 1993 417 * 0 9738 2829 1000 P 31 3745 4939 5382 5965 5464 5962 6808 6004 3377 3838 * 4772 1848 4726 3882 3899 5010 3960 6876 4930 31 67 5032 6097 1611 572 0 * 9760 2845 2229 F 32 4744 4236 * 4846 2040 * 3880 4035 5326 4326 5296 6535 4767 4835 5412 6242 5898 5365 5349 2199 32 22 6983 7158 0 * * 0 9735 1000 1719 A 33 5655 5976 5270 3906 6899 5354 5005 4776 2277 5240 * * 3894 3643 3580 3993 3267 3313 6541 5084 33 11 7091 * 1000 1000 1527 615 9730 1000 2295 C 34 * 605 6516 4810 7155 5460 6556 5446 5390 5671 7100 5338 6254 7104 6831 5086 6961 4746 5584 4953 34 57 4689 * 847 1171 982 1018 9734 2729 1678 D 35 4765 4631 2909 2947 5894 5441 5131 5697 3537 4470 * 3400 2816 4835 4391 3731 4772 * * 6665 35 36 5902 7010 602 1551 * 0 9744 1721 1000 I 36 5347 5049 5991 2221 4521 4201 4229 3821 4277 3237 5776 4362 * 4180 7112 5190 4402 3672 * 4240 36 127 3571 * 2225 347 964 1037 9736 4996 1707 C 37 5788 328 5762 * 6130 * 7891 * * 6885 * 5085 6246 6491 5856 6664 * 6518 * 4370 37 63 4545 * 1303 750 0 * 9744 3319 1000 G 38 6050 * 3436 4567 5358 1547 5033 * 4034 6013 5780 3305 3917 4735 5103 4056 4137 * * 7062 38 37 5893 6918 1033 967 * * 9749 1733 0 R 39 3855 5145 6094 4551 3730 6940 4325 4309 1647 6132 4895 4719 * 5085 3155 5466 7098 5376 6874 4262 39 10 7159 * 1585 585 * 0 9740 1000 1000 K 40 3450 5419 4916 5313 6119 4027 5926 4848 3356 4648 * 4939 6513 4737 3114 2644 3053 3824 * 6079 40 0 * * * * * 0 9740 0 1000 F 41 3861 4866 * 6813 903 6129 7146 * * 3791 5977 6654 * * * 4065 4894 5955 7159 3090 41 11 7016 * 2807 222 0 * 9740 1000 1000 A 42 3030 * 5932 * 5843 4003 5531 4958 3496 4789 6061 3725 3991 4741 3588 3055 3299 4478 5867 4481 42 10 * 7147 * * * * 9749 0 0 R 43 6037 5699 4272 6091 5172 5911 3929 7252 5054 4592 6833 3396 6740 3871 2920 2760 2510 5971 4742 5582 43 0 * * * * 0 * 9739 0 1000 S 44 3581 * * 4398 6085 5755 * 5301 2367 4230 6261 4201 3637 4418 2728 2685 6665 5445 7412 5411 44 36 5917 6942 1297 754 * * 9749 1781 0 D 45 3412 6925 3266 3866 5872 5289 5299 5127 3673 4431 6152 4298 4994 5330 4768 2239 4477 6911 6969 3775 45 34 5941 7126 1984 420 0 * 9737 1704 1000 E 46 3112 * 3111 3854 5314 5335 3589 5081 4645 5616 6908 2849 * 4402 4472 3032 4089 4717 * 5799 46 29 5642 * 1627 564 * 0 9739 1714 1000 R 47 6703 6711 * * 2913 * 7144 5306 4869 1035 4067 * 6796 5986 3812 6732 * 4128 5524 4338 47 16 6512 * 0 * * 0 9704 1000 1000 K 48 4732 * 4185 4172 * 6874 5232 4185 2593 4363 5340 3477 6495 3364 3438 4202 3333 4641 * 4686 48 11 7074 * 2322 322 * 0 9739 1000 1000 R 49 3880 6866 5145 3332 6877 6740 5303 4369 3507 5000 5133 4242 6260 3091 2682 3114 4673 4981 * 4998 49 25 7270 6561 1000 1000 * 0 9739 1000 1000 H 50 * 6474 5537 6711 * * 195 6686 * 6415 * 6128 5653 5819 * 6512 * * * * 50 88 4081 * 1540 608 844 1174 9704 4335 1585 R 51 4926 6710 * 3817 5460 6715 7006 3760 3888 2839 3306 5785 5645 3054 3651 4591 4360 3248 * 5026 51 41 5143 * 1662 548 * 0 9739 2874 1000 D 52 4891 5338 6114 4054 * 5601 6040 6264 2496 3779 5444 3798 5537 4272 2210 3545 4579 4371 * 6970 52 34 5416 * 1357 714 * 0 9739 1774 1000 I 53 4354 7026 5916 5301 6903 5166 3481 3778 3675 3403 5795 4432 5623 4295 4302 3565 2840 4156 6924 4178 53 89 4709 5553 955 1047 * 0 9739 3346 1000 Q 54 5670 3840 7112 4407 4925 5958 1211 7905 5102 7024 5818 5838 4897 4990 3874 4887 4265 3830 * 6687 54 221 2818 * 1213 815 494 1785 9700 6311 2266 H 55 7056 7165 6903 4145 6331 2492 1609 7272 4632 6691 5377 4278 5701 5130 6701 3696 3565 7051 * 4508 55 144 3393 * 2073 391 * 0 9739 5085 1000 I 56 4539 4874 4215 2878 * 2974 4771 6193 3806 4436 5331 5004 3481 4187 4165 3975 4583 3942 * 6495 56 81 4394 7151 2053 398 0 * 9739 3675 1000 L 57 5042 3691 5533 3502 6734 4794 7180 4411 1859 4482 * 4359 5965 4701 3070 4935 4217 4741 6876 6963 57 143 3402 * 1348 720 0 * 9749 5364 1000 P 58 4662 * 4291 3602 6686 5091 4315 5881 4540 4636 5841 5234 1818 4466 3745 3515 3711 5248 * * 58 181 3178 7103 1812 484 * * 9749 5730 0 I 59 5969 4928 * 4875 2319 5790 3831 4998 6115 3863 6967 4666 5445 4635 4749 5301 5099 6148 6946 1789 59 20 7386 7056 3170 170 * 0 9741 1000 1000 L 60 4478 3270 5454 3415 5172 7207 5239 5488 3149 4366 5433 3937 4991 3918 3185 4254 3869 4663 6757 5332 60 11 7077 * 1000 1000 * 0 9742 1000 1714 E 61 * 589 5730 4013 5935 5992 5452 6865 5911 7193 * 7147 5539 5147 4879 4204 * 6709 6965 7706 61 43 5074 * 1890 454 1018 982 9742 2900 1714 D 62 5505 4921 3448 3744 * 5399 4691 6030 3180 5330 6996 3928 3201 3501 3842 2969 3749 5947 * 7140 62 24 5915 * 2941 201 0 * 9749 1747 1000 K 63 4675 6866 4819 2924 4205 7154 4010 3272 3736 3821 6017 5932 5843 3622 4596 4842 5899 2919 * 4137 63 35 5375 * 1201 823 * * 9749 2325 0 V 64 5295 442 * 6010 4234 6707 * 7088 5437 6032 * * 6866 5950 6714 6331 * 4537 6941 5926 64 37 5305 * 1164 852 * * 9749 2322 0 E 65 4284 5409 3128 4643 4699 1995 5434 7055 3830 7079 7088 3322 4208 7249 4991 3395 3917 * * 6357 65 18 6364 * 2807 222 * * 9749 1215 0 E 66 4247 * 5963 4337 4538 4924 4785 5178 1897 4830 4969 4566 5869 4596 3151 4172 5479 5381 5599 3826 66 0 * * * * * * 9749 0 0 L 67 3922 3915 5866 3785 6933 4269 5955 4659 3388 3781 5984 6665 5396 4651 3983 2834 3198 3558 * 7057 67 0 * * * * * * 9749 0 0 L 68 5115 4119 * 5953 1056 6231 4967 6707 * 4699 * 5372 6175 5914 5775 3573 3758 6736 * 3590 68 18 6324 * 2000 415 * * 9749 1719 0 S 69 3550 6694 5075 5059 6926 4321 6061 5473 2886 5472 5069 3428 5643 5237 4357 2560 3013 4769 * 4523 69 9 7400 * 0 * * * 9749 1000 0 K 70 5961 * 4486 5202 5194 5988 4174 6942 3660 3423 6029 4011 7055 4288 2504 2812 3461 4915 5735 4805 70 0 * * * * * * 9749 0 0 N 71 4054 6971 4784 3398 6029 5279 6004 7104 2548 4450 5017 3764 3818 3641 3157 3639 6167 5189 * 5024 71 20 6951 7517 2585 263 * * 9749 1000 0 Y 72 4023 5912 4185 4245 3961 3922 5427 7028 3799 5250 6983 4054 6093 4052 3771 2301 4616 4389 6945 4674 72 0 * * * * * 0 9749 0 1000 H 73 4759 7134 4022 4040 4559 4994 2365 5996 4706 6888 5726 3026 * 3605 4912 2926 4493 4687 * 4995 73 23 7186 6827 1000 1000 0 * 9733 1000 1000 L 74 6147 5377 * 6879 3318 * * 4147 5891 1072 3377 7041 6696 5372 4278 5294 * 4106 6892 5444 74 0 * * * * 0 * 9726 0 1000 E 75 4417 5622 5283 2899 * 6749 7072 4781 2779 3841 4995 4361 * 3056 2831 4245 5076 4304 6117 5946 75 24 * 5906 * * * * 9776 0 0 N 76 4703 5828 3869 4407 7070 5870 5876 5921 2870 4946 5809 3196 6845 3737 2682 3725 4093 4375 5637 4957 76 11 7014 * 0 * * 0 9737 1000 1000 E 77 5842 * 5910 4404 * 5855 429 * 4551 5865 6639 * * 5062 * 5905 6805 5954 * 5881 77 114 5915 4076 998 1002 * 0 9736 1620 1000 V 78 4386 4597 6998 5858 * 5194 3650 3111 4553 2834 2864 6893 5649 4598 3604 5526 5230 3120 * 5182 78 12 6868 * 0 * 1285 762 9552 1000 3131 A 79 2556 4459 4094 4081 * 4965 5741 6443 3002 4773 * 4432 * 4159 2989 3120 4231 5875 * 5075 79 0 * * * * * 0 9593 0 2187 R 80 4524 * * 3691 * * 2817 5655 2716 5629 4272 5806 * 3605 2520 3074 4289 5666 * 5101 80 66 6509 4891 0 * 0 * 9548 1000 2187 L 81 4947 6804 * 4116 5739 * 1304 4417 4842 3380 4626 5679 * 4885 5054 6558 5000 3028 * 6492 81 33 * 5469 * * 1545 605 9401 0 2389 K 82 6340 * * 4213 * * 1906 * 2004 5606 6381 4746 6290 4307 2333 5074 5416 5517 6498 * 82 19 6235 * 2807 222 407 2025 9321 1000 2923 K 83 6409 * 6832 4912 * 5510 * 3170 1720 6362 6283 4383 3692 4656 3439 4676 2617 5303 * * 83 23 5970 * 0 * 0 * 9135 1000 1000 L 84 5936 * * 5130 5842 * 1216 5651 4080 2452 5770 5965 * 4882 4880 4801 4818 5150 * 4516 84 0 * * * * * * 8782 0 0 V 85 5669 * * * * * 5283 4477 * 3378 * 3643 5999 * 5345 3316 1052 3931 * 4471 85 0 * * * * * * 8272 0 0 G 86 4000 * 5482 5049 * 320 * * * * * 5062 * 5163 * 5274 * * * * 86 0 * * * * * * 7656 0 0 E 87 * * 2497 356 * * * * * * * * * 4596 * * * * * * 87 0 * * 0 * * * 6776 0 0 //