HHsearch 1.5 NAME c1i7xD_ FAM FILE c1i7xD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1i7xD_.a3m DATE Wed Jan 9 19:01:00 2013 LENG 63 match states, 63 columns in multiple alignment FILT 60 out of 64 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4719 2.8244 SEQ >ss_dssp CCEECCCCGGGTSSHHHHSCTTCSSCEECCCCCCCCCCCCCCCCCGGGTTSCGGGHHHHHHHC >sa_dssp DEEDEEEEEEEEEDEDEEEDEEDEEDEDEEEEEEEDEEEEEDEDCEDBEEEDEEDEEDAEEED >ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHC >ss_conf 987776678888898631578898853114431048898855201355434822588987519 >Consensus xxxxxxgxFIxxxlxxADxDxxxpPxDslxxYxyEGxgSdxdqdydyLxdWGPrFxkLAdmYG >c1i7xD_ RNDVAPGNFIDENLKAADSDPTAPPYDSLLVFDYEGSESDQDQDYDYLNEWGNRFKKLADMYG >UniRef50_UPI0000ECCE39(733-788:1049) Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1) (DGI) (Pemphigus foliaceus antigen). n=2 Tax=Gallus gallus RepID=UPI0000ECCE39 E=1e-06 s/c=0.97 id=41% cov=73% ----------------ADEDEGRPANDCLLIYDHEGIGTpvgsvgccsfiGEDTDETYLETLGPKFKTLAEI-- >UniRef50_Q4SNR1(820-853:854) Chromosome 15 SCAF14542, whole genome shotgun sequence. (Fragment) n=2 Tax=Tetraodontidae RepID=Q4SNR1_TETNG E=2e-05 s/c=1.49 id=41% cov=54% ------GEFLRLRLAQVTFDPSQPPYDSVQVYGLEGTGS------------------------ >UniRef50_Q24298(1417-1489:1507) DE-cadherin n=22 Tax=Neoptera RepID=CADE_DROME E=1e-14 s/c=1.10 id=40% cov=90% -------DFLGDKKENCDRDVGATTVDDVRHYAYEGDGNsdgslsslasctdDGDLNFDYLSNFGPRFRKLADMYG >UniRef50_Q8MY77(715-788:796) Bb-cadherin n=3 Tax=Branchiostoma RepID=Q8MY77_BRABE E=3e-12 s/c=0.99 id=40% cov=90% ------GEFIDTRLDDEELGDNLGARDEFIPYEDEGEgslagslsslnssSSGGEQNYDYLNDWGPRFSKLANMF- >UniRef50_Q6W4W6(2741-2812:2819) CHz-cadherin n=26 Tax=Euteleostomi RepID=Q6W4W6_CHICK E=1e-12 s/c=1.03 id=38% cov=89% -------EYVSQIIQDADNDLQNPPADTVHFYCLEGECSlagslsslnsisgDEDLNYDCLQEWGSKFDKLKELY- >UniRef50_Q9UJ99(749-816:828) Cadherin-22 n=31 Tax=cellular organisms RepID=CAD22_HUMAN E=4e-12 s/c=1.07 id=41% cov=89% -------DFISRKVALADGDLSVPPYDAFQTYAFEGADSPAaslsslhsgssgsEQDFAYLSSWGPRFRPLAALY- >UniRef50_A7RQ19(3687-3762:3766) Predicted protein n=7 Tax=cellular organisms RepID=A7RQ19_NEMVE E=3e-12 s/c=0.96 id=36% cov=97% -DSVDVGNFINSRVGEADRE-YILSYDALHIYRYEGddsdiddlselgsddeGGDDAEQSFDFLQDWGRKFENLNKIY- >UniRef50_Q4SVZ8(381-459:459) Chromosome undetermined SCAF13701, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SVZ8_TETNG E=4e-08 s/c=0.75 id=40% cov=87% --------YLCEIIRDADQHPDTGPFDSLQVFSTEgggssagslssfssagldgGSGGDAGENarEETLGDWGPRFEKLRALY- >UniRef50_Q7Q1N2(44-112:112) AGAP009714-PA n=1 Tax=Anopheles gambiae RepID=Q7Q1N2_ANOGA E=5e-06 s/c=0.76 id=28% cov=86% --------FLDDRKRRVDIDSASGPFDDLRNYAHEgcgstsgslsslqSGTDDKPHEFSFLTTSGPRFDKLVNI-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * * * * * * * 0 * * * * * 1 0 * * * * * * 1134 0 0 N 2 * * 2387 * * * * * * * * 306 * * * * * * * * 2 0 * * * * * * 1977 0 0 D 3 * * 1008 * * 2278 * * * * * * * * * 1754 * * * * 3 0 * * * * * * 2121 0 0 V 4 * * * * * * * * * * * * 3371 * * * 3426 304 * * 4 0 * * * * * * 2121 0 0 A 5 1700 * 1072 * * * * * * * * 3371 * * * 3060 * * * * 5 134 * 3496 * * * * 2121 0 0 P 6 * * * * * * * 3258 * * * * 1434 * * * * 929 * * 6 259 2606 * 4170 82 * 0 2082 1116 1000 G 7 * * 2556 * * 269 * * * * * * * * * * * * * * 7 69 4419 * 1000 1000 0 * 2709 1000 1000 N 8 * * 1138 2376 * * * * * * 4861 2185 * * * 4845 3972 * * * 8 0 * * * * * * 3076 0 0 F 9 * * * * 370 * * 5584 * 4925 * * * * * * * * * 2534 9 0 * * * * * * 3381 0 0 I 10 * * * * * * * 662 * 2075 5091 * * * * * * 3305 * * 10 0 * * * * * * 3425 0 0 D 11 * 4618 2377 3209 * 3537 4162 6213 4334 3809 * 2499 * 5046 5803 3466 5128 * 6659 5150 11 0 * * * * * * 3420 0 0 E 12 3994 * 2004 1841 * 3897 5257 * 4713 5803 * * * 3639 5226 4831 4242 3952 * * 12 0 * * * * * * 3420 0 0 N 13 5420 * * * * 3954 5152 3929 2216 * * 3017 * 4949 1259 5092 * * * * 13 0 * * * * * * 3517 0 0 L 14 * * * * * * * 3257 1833 946 * * * 5648 * * * 3722 * * 14 0 * * * * * * 3517 0 0 K 15 3751 5221 2984 3518 * 3294 4463 * 2847 3737 * 5648 * 2762 2834 * * * * 5940 15 0 * * * * * * 3517 0 0 A 16 2308 * 2376 1642 * 5037 * * 5187 5353 * 5300 * 4440 3241 * 5300 * * * 16 0 * * * * * * 3593 0 0 A 17 457 4571 * 4626 * * 5984 5701 * * 5212 5131 * * * * 5843 3630 * * 17 0 * * * * * * 3587 0 0 D 18 * * 216 4321 * * * * * * * 4144 * * * * 4958 * * * 18 0 * * * * * * 3587 0 0 S 19 * 6144 3299 3161 4958 3797 3903 4878 4049 4248 5145 2357 * 5099 3749 4154 4605 5056 * * 19 0 * * * * * * 3587 0 0 D 20 * * 243 4207 * 5207 5099 * * * * * * * * 5024 * * * 6144 20 72 * 4364 * * * * 3587 0 0 P 21 * 4669 4565 3699 * 5956 5208 * 4949 3172 * 4765 1095 * 4858 4802 4244 5221 * * 21 0 * * * * 974 1026 3531 0 1614 T 22 4864 4443 2828 4965 * 3316 * * * * * 2481 * 3932 * 2558 2625 * 6088 4183 22 0 * * * * 0 * 3578 0 1000 A 23 1219 * 5444 * * 3687 * 5044 * 5207 * 5238 * 4958 3524 3949 4028 2827 * * 23 0 * * * * * * 3587 0 0 P 24 5391 * * * 4291 3143 5024 4405 * 3707 * * 659 * * * 5391 * * * 24 0 * * * * * * 3587 0 0 P 25 3091 * * * * 5212 * * * * * * 355 * * 4324 5391 * * * 25 0 * * * * * * 3587 0 0 Y 26 5238 5776 * * 2031 * 5066 5212 * * * 3374 4722 * 4113 * * 5391 * 1192 26 0 * * * * * * 3587 0 0 D 27 * * 0 * * * * * * * * * * * * * * * * * 27 0 * * * * * * 3604 0 0 S 28 4293 3783 2621 3998 * * * * * * * * * * 7182 1159 2347 * * * 28 0 * * * * * * 3604 0 0 L 29 4534 * * * 4368 * * 4546 * 709 5487 * 6185 * * * * 2449 * 4854 29 0 * * * * * * 3604 0 0 L 30 4517 * * * * * 2356 5236 5636 1850 * * * 2136 2418 * 5487 * * * 30 0 * * * * * * 3604 0 0 V 31 * * 5855 * 5257 * 3335 1834 * 5916 * 3411 4033 * * * 2910 1877 * * 31 0 * * * * * * 3604 0 0 F 32 * * * * 2196 * * * * * * * * * * * * * 4854 420 32 0 * * * * * * 3604 0 0 D 33 1768 4041 1805 4512 * 2272 * * * * 6137 5825 * * 5101 5129 5714 * * * 33 0 * * * * * * 3604 0 0 Y 34 * * 4356 * 3413 * 3177 5701 * 4115 5636 5916 * * * * 5129 4854 * 811 34 59 4634 * 3634 121 * * 3604 1345 0 E 35 5874 * * 59 * * * * * 5429 * * * * * * * * * * 35 138 3454 * 3960 96 * * 3604 1926 0 G 36 * * * * * 157 * * * * * 5429 * * * 3649 * * * * 36 58 4662 * 3915 99 * * 3604 1394 0 S 37 3447 * 2757 2128 * 3057 * 5596 * * * 5590 * 4090 5629 2495 4015 4266 * * 37 128 3562 * 3700 115 * * 3604 1924 0 E 38 5118 5257 5513 5114 * 515 * * * * * * * * 6045 2886 4499 * * * 38 152 3325 * 3626 122 * * 3604 2079 0 S 39 * * 3478 * * 4124 * * * * * 3654 * * * 455 4503 * * * 39 785 1253 * 3711 115 * * 3604 3022 0 D 40 * * 930 2617 * 3227 * 5988 * * * 5414 3187 * * 4621 5997 * * * 40 134 3490 * 3603 124 * * 3606 1904 0 Q 41 2150 * 3716 2923 * 1949 * * 4869 5876 * 4934 5903 4673 * 2792 5414 * * * 41 62 4570 * 3588 125 * * 3606 1515 0 D 42 * * 1017 1896 * 3213 * * * * * 4342 3982 5909 * * * * * * 42 14 6713 * 3700 115 * * 3606 1000 0 Q 43 * * 5025 4060 * 5105 4116 5216 5178 2119 * * * 1136 * 4015 5580 * * * 43 92 4015 * 4240 78 * * 3606 1605 0 D 44 * * 1000 3354 * * * * 5773 * * 2049 5105 * * 4105 * 4188 * * 44 42 5124 * 1000 1000 * * 3606 1000 0 Y 45 5105 * 5684 3598 1578 * * * * * * * * * 4849 * 5178 * * 1084 45 0 * * * * * * 3606 0 0 D 46 5464 * 1052 2824 * 4519 6000 * * * * 3921 * 3470 * 3091 5580 * * * 46 0 * * * * * * 3606 0 0 Y 47 * 3591 5412 5630 2331 * 4499 * 5178 * * * 5105 * 4849 * 5124 * * 971 47 40 5178 * 2585 263 * * 3606 1000 0 L 48 * * * * * * * 4755 * 105 4922 * * * * * * * * * 48 39 5216 * 0 * * * 3606 1000 0 N 49 5025 * 3676 3617 * 4036 3589 * 4856 * * 2109 6072 3384 5357 2281 4096 * * * 49 0 * * * * * * 3606 0 0 E 50 5909 * 1079 2306 * 5851 * * * * * 3415 * * * 3752 3030 * * * 50 0 * * * * * * 3606 0 0 W 51 * * * * 3575 * * * * 3033 * * * * * 4869 * * 396 * 51 0 * * * * * * 3606 0 0 G 52 * * 4922 * * 48 * * * * * * * * * * * * * * 52 0 * * * * * * 3606 0 0 N 53 * * * * * * * * * * * 6215 150 * 4415 4713 * * * * 53 0 * * * * * * 3606 0 0 R 54 * 5851 * 6000 * * * * 2105 5105 * * 4107 4210 753 * * * * * 54 0 * * * * * * 3606 0 0 F 55 * * * * 0 * * * * * * * * * * * * * * * 55 0 * * * * * * 3606 0 0 K 56 6519 * 3458 3493 * 4917 * * 1921 * * 5027 * 3142 1871 3402 * * * * 56 0 * * * * * * 3606 0 0 K 57 5699 * * * 5025 * * * 680 * 5988 4579 5464 * 3813 * 2943 4489 * * 57 0 * * * * * * 3606 0 0 L 58 * * * * * * * * * 0 * * * * * * * * * * 58 0 * * * * * * 3546 0 0 A 59 346 * 5038 * * 6489 * * 5241 * * 5100 * * 5139 4202 * 4896 * * 59 0 * * * * * * 3546 0 0 D 60 3836 5992 1250 2189 * 5071 6643 * 4344 * * 3193 * 4453 5038 * * * * * 60 0 * * * * * * 3546 0 0 M 61 * * * * * * * 2584 * 1456 1093 * * * * * * * * * 61 0 * * * * * * 3546 0 0 Y 62 * * * * 2845 * * * * * * * * * * * * * * 216 62 0 * * * * * * 3480 0 0 G 63 * * * * * 0 * * * * * * * * * * * * * * 63 0 * * 0 * * * 2728 0 0 //