HHsearch 1.5
NAME  c1fwoA_
FAM   
FILE  c1fwoA_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c1fwoA_.a3m 
DATE  Wed Jan  9 14:29:55 2013
LENG  35 match states, 35 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.3 
EVD   0.4928  3.3991 
SEQ
>ss_dssp
CCCSSSSCCCCSSSEECCCCCSSCSSCCCCEECCC
>sa_dssp
EEECDEECEBEEDCECDEDCEEEEEECECDCDEEE
>ss_pred
CCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCC
>ss_conf
94333445788766020101554200673100269
>Consensus
dhvcdxxxxcpagstcxxxxgxrnxxxvwgcxpve
>c1fwoA_
DHVCDDNFSCPAGSTCSSAFGFRNLSLVWGCSPVE
>UniRef50_A3AYH2(330-361:416) Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=A3AYH2_ORYSJ  E=0.0007 s/c=1.41 id=55% cov=94%
---CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVE
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
D 1    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

H 2    *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

V 3    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

C 4    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1354	0	0	

D 5    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1354	0	0	

D 6    *	*	1000	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	6
       0	*	*	*	*	*	*	1354	0	0	

N 7    *	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	7
       0	*	*	*	*	*	*	1354	0	0	

F 8    *	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	8
       0	*	*	*	*	*	*	1354	0	0	

S 9    *	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	*	*	9
       0	*	*	*	*	*	*	1354	0	0	

C 10   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1354	0	0	

P 11   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1354	0	0	

A 12   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1354	0	0	

G 13   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1354	0	0	

S 14   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	14
       0	*	*	*	*	*	*	1354	0	0	

T 15   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	15
       0	*	*	*	*	*	*	1354	0	0	

C 16   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1354	0	0	

S 17   *	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	17
       0	*	*	*	*	*	*	1354	0	0	

S 18   *	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	18
       0	*	*	*	*	*	*	1354	0	0	

A 19   1000	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1354	0	0	

F 20   *	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	20
       0	*	*	*	*	*	*	1354	0	0	

G 21   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1354	0	0	

F 22   *	*	*	*	1000	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1354	0	0	

R 23   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	23
       0	*	*	*	*	*	*	1354	0	0	

N 24   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1354	0	0	

L 25   *	*	*	*	*	*	1000	*	*	1000	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1354	0	0	

S 26   *	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	26
       0	*	*	*	*	*	*	1354	0	0	

L 27   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1354	0	0	

V 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	28
       0	*	*	*	*	*	*	1354	0	0	

W 29   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	29
       0	*	*	*	*	*	*	1354	0	0	

G 30   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1354	0	0	

C 31   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	*	*	*	*	1354	0	0	

S 32   *	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	32
       0	*	*	*	*	*	*	1354	0	0	

P 33   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	33
       0	*	*	*	*	*	*	1354	0	0	

V 34   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	34
       0	*	*	*	*	*	*	1354	0	0	

E 35   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	35
       0	*	*	0	*	*	*	1354	0	0	

//