HHsearch 1.5 NAME c1f8vD_ FAM FILE c1f8vD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1f8vD_.a3m DATE Thu Jan 10 01:53:56 2013 LENG 26 match states, 26 columns in multiple alignment FILT 1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.5248 4.2673 SEQ >ss_dssp CHHHHHHHHHHHHTCCCCCCCSCCC- >sa_dssp EEEEDCDDEDDEEDDEEEDDEEEEE- >ss_pred CHHHHHHHHHHHHHCCCCEEEEEECC >ss_conf 92689999999731343012003219 >Consensus skfwegvlrvlnqisgthqltgmymx >c1f8vD_ SKFWEGVLRVLNQISGTHQLTGMYMX # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 K 2 * * * * * * * * 0 * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 F 3 * * * * 0 * * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 W 4 * * * * * * * * * * * * * * * * * * 0 * 4 0 * * * * * * 1000 0 0 E 5 * * * 0 * * * * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 G 6 * * * * * 0 * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 V 7 * * * * * * * * * * * * * * * * * 0 * * 7 0 * * * * * * 1000 0 0 L 8 * * * * * * * * * 0 * * * * * * * * * * 8 0 * * * * * * 1000 0 0 R 9 * * * * * * * * * * * * * * 0 * * * * * 9 0 * * * * * * 1000 0 0 V 10 * * * * * * * * * * * * * * * * * 0 * * 10 0 * * * * * * 1000 0 0 L 11 * * * * * * * * * 0 * * * * * * * * * * 11 0 * * * * * * 1000 0 0 N 12 * * * * * * * * * * * 0 * * * * * * * * 12 0 * * * * * * 1000 0 0 Q 13 * * * * * * * * * * * * * 0 * * * * * * 13 0 * * * * * * 1000 0 0 I 14 * * * * * * * 0 * * * * * * * * * * * * 14 0 * * * * * * 1000 0 0 S 15 * * * * * * * * * * * * * * * 0 * * * * 15 0 * * * * * * 1000 0 0 G 16 * * * * * 0 * * * * * * * * * * * * * * 16 0 * * * * * * 1000 0 0 T 17 * * * * * * * * * * * * * * * * 0 * * * 17 0 * * * * * * 1000 0 0 H 18 * * * * * * 0 * * * * * * * * * * * * * 18 0 * * * * * * 1000 0 0 Q 19 * * * * * * * * * * * * * 0 * * * * * * 19 0 * * * * * * 1000 0 0 L 20 * * * * * * * * * 0 * * * * * * * * * * 20 0 * * * * * * 1000 0 0 T 21 * * * * * * * * * * * * * * * * 0 * * * 21 0 * * * * * * 1000 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 1000 0 0 M 23 * * * * * * * * * * 0 * * * * * * * * * 23 0 * * * * * * 1000 0 0 Y 24 * * * * * * * * * * * * * * * * * * * 0 24 0 * * * * * * 1000 0 0 M 25 * * * * * * * * * * 0 * * * * * * * * * 25 0 * * * * * * 1000 0 0 X 26 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 26 0 * * 0 * * * 1000 0 0 //