HHsearch 1.5
NAME  c1dpkA_
FAM   
FILE  c1dpkA_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c1dpkA_.a3m 
DATE  Thu Jan 10 03:02:28 2013
LENG  26 match states, 26 columns in multiple alignment
FILT  1 out of 3 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.5964  5.7774 
SEQ
>ss_pred
CCCCCCCCCCCCCCCCCCCCCCCCCC
>ss_conf
94540167888731000064000369
>Consensus
kvgffkrnrppleeddeegexxxxxx
>c1dpkA_
KVGFFKRNRPPLEEDDEEGEXXXXXX
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
K 1    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

V 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

G 3    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

F 4    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

F 5    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

K 6    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

R 7    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

N 8    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

R 9    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

P 10   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

P 11   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

L 12   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

E 13   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

E 14   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

D 15   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

D 16   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

E 17   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

E 18   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1000	0	0	

G 19   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

E 20   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

X 21   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	21
       *	*	*	*	*	*	*	1000	0	0	

X 22   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	22
       *	*	*	*	*	*	*	1000	0	0	

X 23   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	23
       *	*	*	*	*	*	*	1000	0	0	

X 24   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	24
       *	*	*	*	*	*	*	1000	0	0	

X 25   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	25
       *	*	*	*	*	*	*	1000	0	0	

X 26   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	26
       0	*	*	0	*	*	*	1000	0	0	

//