HHsearch 1.5 NAME c1dipA_ FAM FILE c1dipA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1dipA_.a3m DATE Thu Mar 11 07:57:14 2010 LENG 77 match states, 77 columns in multiple alignment FILT 26 out of 30 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.4320 0.3163 SEQ >ss_dssp CCSTTTGGGGTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCCCSSSSCCCCCSSSCCSSCCCCCTTCC >sa_dssp EEEDDECDEDCDDEEDEEEBDDEEDEEDDEDEEEEDEDEEDEDCDEEEEECBDEECCEEEEEEEEEEEEEEEEEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >ss_conf 92789999999999999999999999999999999999999517989997665542046899988872116887889 >Consensus MDLVKsHLmxAVREEVevLkexIxeLxxxxxxLexENxxLkxxxxpeqlxqxxxxxxxxxxxpxtxxxxxapxgxxx >c1dipA_ MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPETPEAPEAPGGSAV >UniRef50_UPI0001791A33(977-1041:1044) PREDICTED: similar to conserved hypothetical protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791A33 E=2e-11 s/c=1.08 id=50% cov=86% MDLVKSHLMYAVREEVEVLKEKIAELMDKVGLLETENSNLRMLVPPDMLEQYNREKQKSTNGQST------------ >UniRef50_Q8IP84(1176-1247:1331) Bunched, isoform J n=7 Tax=Neoptera RepID=Q8IP84_DROME E=2e-17 s/c=1.25 id=47% cov=95% MDLVKSHLMIAVREEVEVLKERISELMDKINKLELENSILKSNIPQET-LQQLQLQLQLAAPPATPAIQAAPA---- >UniRef50_A8XYM4(409-485:581) Putative uncharacterized protein n=3 Tax=Caenorhabditis briggsae RepID=A8XYM4_CAEBR E=3e-15 s/c=1.08 id=35% cov=88% MELVKTHLTYAVREEVDTLRNTIAELEYQMRELQYECTYYRQNCAPEVVDQANNYVLQQMSAHQRPT---------- >UniRef50_A8PR82(32-98:99) Shortsighted class 1, putative n=1 Tax=Brugia malayi RepID=A8PR82_BRUMA E=2e-14 s/c=1.20 id=46% cov=88% MDLVKTHLMFAVREEVDVLRAKIMELEATILQLEAENTILREHVPVEILNKLSLQTTP----PNSTTTAAA------ >UniRef50_A8PP30(183-257:331) TSC-22/dip/bun family protein n=1 Tax=Brugia malayi RepID=A8PP30_BRUMA E=9e-13 s/c=0.99 id=46% cov=79% MDLVKTHLTFAVREEVEILRSTIVELEAKVAQLESQNQVLKQFAPVEVVNSLTVLVQQQQ----------------- >UniRef50_UPI000058511F(121-198:346) PREDICTED: similar to Tsc22d2 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI000058511F E=2e-12 s/c=0.94 id=47% cov=96% MDLVKSHLLFAVREEVEVLKEQIKILLEKNDLLQEENAALKQrlqasTAPPPQGGN-PAPVLAMANAPQQPTLTQSHQG--- >UniRef50_UPI0001758549(503-577:584) PREDICTED: similar to bunched CG5461-PD n=1 Tax=Tribolium castaneum RepID=UPI0001758549 E=9e-12 s/c=0.95 id=45% cov=95% MDLVKSHLMYTVREEVEVLKEKIAELMEKIQQLETENNFLRSQIPKSQAPGTATPILTTTSTTTTTATSTAP----- >UniRef50_Q4H2N8(456-540:746) Ci-TSC22 protein n=1 Tax=Ciona intestinalis RepID=Q4H2N8_CIOIN E=1e-11 s/c=0.84 id=47% cov=77% MDLVKKHLMLAVRDEVDELKDKIVELQDDNFKIKLENETLKGILTPEQFNIAQQKISS------------------- >UniRef50_UPI0000D57765(329-371:377) PREDICTED: similar to bunched CG5461-PE n=1 Tax=Tribolium castaneum RepID=UPI0000D57765 E=1e-08 s/c=1.43 id=43% cov=55% LDAVKTHLMLAVHKEVDFLKTRVSTLEGRVNELEIENSILR------------------------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 3518 132 * * * * * * * * * 1 0 * * * * * * 2502 0 0 D 2 * * 134 3498 * * * * * * * * * * * * * * * * 2 0 * * * * * * 2494 0 0 L 3 3535 * * * * * * * * 130 * * * * * * * * * * 3 0 * * * * * * 2494 0 0 V 4 * * * * * * * * * * * * * * * * * 0 * * 4 0 * * * * * * 2494 0 0 K 5 * * * * * * * * 0 * * * * * * * * * * * 5 0 * * * * * * 2494 0 0 N 6 * * * * * * * * 3601 * * 5018 * * * 972 1408 * * * 6 0 * * * * * * 2494 0 0 H 7 * * * * * * 0 * * * * * * * * * * * * * 7 0 * * * * * * 2494 0 0 L 8 * * * * * * * * * 0 * * * * * * * * * * 8 0 * * * * * * 2494 0 0 M 9 * * * * * * * * * 3851 438 * * * * * 2379 * * * 9 0 * * * * * * 2494 0 0 Y 10 * * * * 1427 * * 4843 * 2568 * * * * * * * * * 1236 10 0 * * * * * * 2494 0 0 A 11 106 * * * * * * * * * * * * * * * 3817 * * * 11 0 * * * * * * 2494 0 0 V 12 * * * * * * * * * * * * * * * * * 0 * * 12 0 * * * * * * 2494 0 0 R 13 * * * * * * 3535 * * * * * * * 130 * * * * * 13 0 * * * * * * 2494 0 0 E 14 * * 3601 267 * * * * 3535 * * * * * * * * * * * 14 0 * * * * * * 2494 0 0 E 15 * * * 0 * * * * * * * * * * * * * * * * 15 0 * * * * * * 2494 0 0 V 16 * * * * * * * * * * * * * * * * * 0 * * 16 0 * * * * * * 2494 0 0 E 17 * * 1417 677 * * * * * * * * * * * * * * * * 17 0 * * * * * * 2494 0 0 I 18 * * * 3601 3535 4236 * 3544 * * * * * * * * 2863 849 * * 18 0 * * * * * * 2494 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 2494 0 0 K 20 * * * * * * * * 495 * * * * * 1783 * * * * * 20 0 * * * * * * 2494 0 0 E 21 4470 * 3601 887 * 4236 * * * * * 3498 * * * 4188 2887 * * * 21 0 * * * * * * 2494 0 0 Q 22 * * * * * * * * 1480 * * * * 1608 3046 * 2379 * * * 22 0 * * * * * * 2494 0 0 I 23 * * * * * * * 130 * * * * * * * * * 3535 * * 23 0 * * * * * * 2494 0 0 R 24 2171 * * * 4236 * * * 1901 * 4470 * * * 4052 2773 3878 2865 * * 24 0 * * * * * * 2494 0 0 E 25 * * 3293 430 * * * 3851 * * * * * * * * 3535 * * * 25 0 * * * * * * 2494 0 0 L 26 * * * * * * * * * 0 * * * * * * * * * * 26 0 * * * * * * 2494 0 0 V 27 5086 * * 1408 * * * 4317 * 3188 2047 * * 3601 * * * 4170 * 4211 27 0 * * * * * * 2494 0 0 E 28 2747 * 2157 1325 * 3535 * * * * * 4236 * * * * * * * 3498 28 0 * * * * * * 2494 0 0 K 29 * * 3601 * * * 4236 * 1528 * * * * 3498 1381 * 4470 * * * 29 0 * * * * * * 2494 0 0 N 30 * * * * * * * 2171 * 4353 3498 1284 * * * * * 2120 * * 30 0 * * * * * * 2494 0 0 S 31 3568 * 3851 * 3601 4803 * * * 4470 * 2171 * 3817 2821 2168 5270 * * * 31 0 * * * * * * 2494 0 0 Q 32 3673 * * 2517 * * * * 3092 2946 * * * 1453 4236 * 5179 4211 * * 32 0 * * * * * * 2494 0 0 L 33 * * * * * * * 3601 * 124 * * * * * * * * * * 33 0 * * * * * * 2494 0 0 E 34 * * * 492 * * * * 3601 * * * * 2664 4353 * * * * * 34 0 * * * * * * 2494 0 0 R 35 3000 * * 3080 * * * 3535 * 3092 * * * 3039 2866 4188 3227 * * 2913 35 0 * * * * * * 2494 0 0 E 36 * * * 84 * * * * * * * * * 4151 * * * * * * 36 0 * * * * * * 2543 0 0 N 37 * 3507 * * * * * * * * * 133 * * * * * * * * 37 0 * * * * * * 2543 0 0 T 38 2301 * * 3565 * 5091 * * * * * 2533 * 4151 4359 2064 2589 * * * 38 0 * * * * * * 2543 0 0 L 39 3760 * * * 3728 * * 1875 * 1961 * 4699 * * * * 3565 3181 * 3507 39 0 * * * * * * 2543 0 0 L 40 * * * * * * * * * 133 * * * * * * * * * 3507 40 0 * * * * * * 2543 0 0 K 41 * * * * * * * * 760 * * * * * 1287 * * * * * 41 41 * 5159 * * * * 2543 0 0 T 42 3936 * * 3303 * 3458 * * * * 4341 3137 * 1930 4250 2325 3950 * * * 42 127 4374 4794 2322 322 * 0 2677 1000 1000 L 43 * * * * 4022 * 3579 3438 * 1438 * 2193 * 4006 * * 3153 * * * 43 0 * * * * * 0 2668 0 1342 A 44 1293 3431 * * * * * 2611 * 3438 * * * * * 3489 * 2697 * * 44 0 * * * * * 0 2668 0 1342 S 45 3431 * * * * * * * * * * 3309 1365 * * 1758 3030 * * * 45 0 * * * * * 0 2668 0 1342 P 46 * * * * * * * * 4006 * * 2752 823 3724 * 4897 * 3120 * * 46 0 * * * * * 0 2668 0 1342 E 47 * * 2597 487 * * * * * * * * 4080 * * 4006 * * * * 47 0 * * * * * 0 2668 0 1342 Q 48 * * * * * * * 4225 * * 4313 * * 909 * * 2652 2289 * * 48 71 * 4377 * * * 0 2668 0 1342 L 49 3931 * * * 3355 4041 * * * 774 4992 * * * * * * 2646 * * 49 0 * * * * 1276 769 2644 0 1555 E 50 2294 * 3431 3480 * 4080 * * 4230 3726 * 2270 4006 * * 3026 4902 * * * 50 0 * * * * 886 1123 2668 0 1342 K 51 * * * * * 3976 * 3461 3367 * * 4277 * 752 4688 3949 * * * * 51 76 * 4277 * * * 0 2725 0 1000 F 52 2368 * * * 2606 * * * * 1101 * * * 4234 * * 3864 * * 4211 52 44 * 5052 * * 766 1280 2690 0 1309 Q 53 3885 * * * * * * * * 4130 * 2345 2902 1708 * 2899 3259 * * * 53 0 * * * * 1114 895 2779 0 1182 S 54 2153 * * * * * * * * 4114 * 3249 * 2512 4174 2682 2631 3960 * * 54 47 * 4975 * * * 0 2779 0 1000 R 55 * * * 4113 * * * * 3459 2994 * * 3105 1432 4497 3501 * * * 3234 55 105 4755 4907 2000 415 * 0 2788 1000 1164 L 56 * 4753 * * * 4462 * 2105 4101 3677 * * * 3977 * * 2465 1718 * * 56 108 4712 4871 0 * * 0 2690 1000 1457 S 57 4481 4593 * * * * * * * 1718 * 4653 * 1898 * 2746 3893 3549 * * 57 56 * 4703 * * 1979 422 2693 0 1538 P 58 4072 * * * * * * * 4064 * * * 1792 1774 * 2909 2587 * * * 58 284 3267 3742 1616 570 * 0 2691 1276 1504 E 59 * * * 4070 * 2079 * * 4534 3657 3901 * * 1666 * 2988 3771 * * * 59 0 * * * * 1288 760 2569 0 1740 E 60 2871 * * 4200 * 4642 * * * * 2951 4332 4246 2602 * 2083 2874 * * * 60 0 * * * * 1678 541 2570 0 1450 P 61 3197 * * * * 4684 * * * * * 2496 2002 4627 * 1754 3504 * * * 61 55 4745 * 2322 322 * 0 2513 1000 1334 A 62 1254 * * * * 3859 * * * * * 4651 1660 * * 3562 3818 * * * 62 0 * * * * 896 1112 2513 0 1334 P 63 * * * * * * 2986 * * * * * 758 3351 * 3671 3237 * * * 63 73 4332 * 1000 1000 0 * 2593 1000 1000 E 64 2756 * * 4215 * 2815 * * * * * 3043 * 2157 * 2552 3322 4640 * * 64 0 * * * * * * 2632 0 0 T 65 * * * * * 4371 * * * * 4384 * * 3296 3031 2470 1002 * * * 65 55 4742 * 1585 585 * * 2632 1000 0 P 66 2264 * * * * * * * * * * * 1060 * * * 1679 * * * 66 0 * * * * * * 2576 0 0 E 67 2493 * * 4134 * * * * 4566 * * 3457 * 3128 * 2965 1360 * * * 67 0 * * * * * * 2576 0 0 A 68 2240 * * * * 4583 * 3745 * 2617 * * 2482 4493 * * 2482 3230 * * 68 0 * * * * * * 2348 0 0 P 69 2220 * * * * * * 3147 * * * * 1470 2855 * 3514 3543 * * * 69 84 4144 * 0 * * * 2355 1000 0 E 70 1987 * * 3621 * * * * * * * * * 1363 * 3039 2681 * * * 70 0 * * * * * * 2350 0 0 A 71 702 * * * * * * * * * * 4008 * 2498 * 2775 * * * * 71 0 * * * * * * 2350 0 0 P 72 * * * * * * 3181 * * * * 3475 322 * * * * * * * 72 0 * * * * * * 2185 0 0 G 73 2016 * * * * 2052 * * * * * * 2156 2587 * 3049 * * * * 73 0 * * * * * * 2047 0 0 G 74 * * * * * 323 * * * * * * * 2317 * * * * * * 74 0 * * * * * * 1895 0 0 S 75 * * * * * * * * * * * 1943 * * * 987 2086 * * * 75 0 * * * * * * 1671 0 0 A 76 536 * * * * 1688 * * * * * * * * * * * * * * 76 0 * * * * * * 1592 0 0 V 77 * * * * * * * * * * * * * * * * * 0 * * 77 0 * * 0 * * * 1000 0 0 //