HHsearch 1.5 NAME c1d2lA_ FAM FILE c1d2lA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1d2lA_.a3m DATE Wed Jan 9 16:59:08 2013 LENG 45 match states, 45 columns in multiple alignment FILT 116 out of 2196 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.2 EVD 0.5587 2.9520 SEQ >ss_dssp CCCCBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTTTCCCC >sa_dssp EEEEDDEEDBADBEDEEECEDECCDCDDECAEDCCAADEEDCDEE >ss_pred CCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCCCCCCCHHHHCCC >ss_conf 966668887397597978488884531678749888883442259 >Consensus gxxxxCxxxxfxCxxgxCIxxxxxCDgxxDCxDgsDExxxxCxxx >c1d2lA_ GSPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCHQH >UniRef50_D2A038(1331-1370:1580) Putative uncharacterized protein GLEAN_08151 n=1 Tax=Tribolium castaneum RepID=D2A038_TRICA E=5e-05 s/c=1.22 id=35% cov=89% -----CCRDGFQCPNTQeCLPANFVCDKIDHCADGSDEHPSHCNN- >UniRef50_P98164(3549-3592:4655) Low-density lipoprotein receptor-related protein 2 n=40 Tax=Eukaryota RepID=LRP2_HUMAN E=1e-05 s/c=1.16 id=31% cov=100% -PQRFCRLGQFQCSDGNCTSPQTLCNAHQNCPDGSDEDRLLCENH >UniRef50_A2VEC9(1412-1454:5147) SCO-spondin n=15 Tax=Eutheria RepID=SSPO_HUMAN E=9e-05 s/c=1.11 id=32% cov=98% -AAPGCGEGQMTCSSGHCLPLALLCDRQDDCGDGTDEPSYPCPQ- >UniRef50_A8XJM0(30-81:1782) Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8XJM0_CAEBR E=2e-07 s/c=1.10 id=34% cov=98% --PGRCMSGDYDCGLGQCVPISQFRDGKPDCMDGSDEWcfigqvscgPVYCADY >UniRef50_UPI0000DB6F74(234-273:645) PREDICTED: similar to CG32635-PA n=2 Tax=Apis mellifera RepID=UPI0000DB6F74 E=0.0001 s/c=1.20 id=29% cov=91% ----PCLDNEFYCEDATCIAAELQCNGRVNCRFRWDEEDQSCNK- >UniRef50_UPI000186F374(2444-2485:2887) low-density lipoprotein receptor, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186F374 E=2e-07 s/c=1.34 id=31% cov=78% ---RSCGNDEYLCPEGWCIPLSYKCNGVKECSNGEDE-------- >UniRef50_B3S5U0(3360-3400:4197) Putative uncharacterized protein n=2 Tax=Trichoplax adhaerens RepID=B3S5U0_TRIAD E=8e-07 s/c=1.34 id=33% cov=93% ---PVCPQTTFTCGNGYCVDPKYVCDYANDCGGLQDETNSVCSK- >UniRef50_UPI00015B47BD(101-141:695) PREDICTED: similar to ENSANGP00000018359 n=1 Tax=Nasonia vitripennis RepID=UPI00015B47BD E=0.0006 s/c=1.10 id=34% cov=91% -----CRDQKFRCpTSSECISSAHVCDGIQDCAGGGDENAEICRDY # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3589 0 0 S 2 3048 5433 * 5062 * * 4288 * * * * 5011 1490 * 5213 1821 3683 * * * 2 0 * * * * * * 4797 0 0 P 3 4325 5294 * 3975 * * * * 4071 * * 5090 1123 4172 * 2733 4749 3835 * * 3 25 * 5869 * * * * 5100 0 0 P 4 3444 * 6145 4481 * 3331 4048 * 3819 4338 * 6082 2541 3703 3158 2829 5365 5126 * * 4 0 * * * * * 0 5363 0 1000 Q 5 5855 * 5603 3570 6123 5019 6116 * 3731 5639 5793 * 3210 3856 2876 2541 2535 4820 * 6398 5 24 5935 * 2152 368 0 * 5353 1503 1000 C 6 * 0 * * * * * * * * * * * * * * * * * * 6 41 5143 * 1211 816 * * 5436 2217 0 Q 7 3801 6852 4683 4180 6791 3468 6782 6362 4033 3532 4960 4756 2203 3987 3898 3275 5114 6835 * * 7 31 5578 * 1246 790 * * 5432 1426 0 P 8 3341 * 3594 3248 6573 4349 * 6937 4857 5022 5838 3965 2395 4355 4934 2857 4581 5163 * 5698 8 47 5591 6448 0 * * * 5293 1999 0 G 9 5725 * 2123 4784 5990 1882 4507 * 6388 * 6700 2779 6973 4435 6183 3907 4650 6385 6891 5490 9 73 4646 6758 0 * 0 * 5282 2348 1000 E 10 4929 * 4851 1870 5068 5483 3678 * 4175 5748 4346 5363 * 2390 7008 4254 3603 * 6867 4672 10 23 6013 * 1047 955 0 * 5291 1567 1000 F 11 6450 * * 5949 659 * 6102 4874 6411 5298 5483 * * * 6120 6589 5245 4649 6043 3004 11 0 * * * * * * 5295 0 0 A 12 3722 * 4343 4125 5251 7316 4531 6852 3323 3713 4666 5153 4918 2920 3062 3350 3979 5949 * 5215 12 0 * * * * * * 5295 0 0 C 13 * 0 * * * * * * * * * * * * * * * * * * 13 104 3839 * 414 2002 * * 5295 3397 0 A 14 3975 * 3545 4815 5625 2602 4357 * 3080 4616 * 3930 3886 4532 3487 3566 4284 6336 * 6864 14 98 3928 * 148 3355 * * 5295 3016 0 N 15 6452 * 1958 4714 * 4967 * 6709 * 5284 * 1742 6424 * 6595 2306 3663 * * 5392 15 83 4341 7226 313 2359 * * 5295 2539 0 S 16 6295 * 5459 6912 6466 891 5504 * 3529 5722 * 3967 * 3998 5362 3699 4638 * * 6644 16 137 3462 * 0 * 0 * 5294 3247 1000 R 17 4315 * 5652 3468 5452 4544 5424 6001 2907 4185 4776 4953 * 2980 2715 4652 3346 5044 6180 5919 17 80 4217 * 275 2526 * * 5295 2668 0 C 18 6455 76 * * 6297 * * * * * 6223 * * 6187 * * * * * * 18 0 * * * * * * 5295 0 0 I 19 * * * * * * 6123 903 * 2652 6559 * * * 6289 * 6478 2191 * 4707 19 0 * * * * * * 5295 0 0 Q 20 3999 * 3303 4476 6989 6468 4796 6766 * 5159 * 4148 1420 4759 4778 2571 * 7108 * 5656 20 0 * * * * * * 5295 0 0 E 21 2711 * 4653 3992 6709 6407 4903 4101 3564 3578 4716 4032 3946 3438 4208 4263 5271 4868 5597 5644 21 11 7038 * 0 * * * 5295 1000 0 R 22 3520 * 4796 3175 6922 4355 5426 6336 4193 5602 * 4005 6424 4823 3785 2052 3531 5883 5491 4340 22 0 * * * * * * 5295 0 0 W 23 4472 * 7020 5045 3333 6202 4961 * 2798 2571 * 4456 * 3418 4368 4618 5844 6837 2786 4045 23 0 * * * * * * 5295 0 0 K 24 6706 * * 5688 3314 * 5304 4233 3495 2704 4786 * * 4984 2710 * 5282 2165 4345 5000 24 0 * * * * * * 5295 0 0 C 25 * 38 * * * * * * * * * * * * 5284 * * * * * 25 0 * * * * * * 5295 0 0 D 26 * * 404 * * * * * * * * 2032 * * * * * * * * 26 0 * * * * * * 5295 0 0 G 27 4895 * 5260 5226 3829 779 5093 * 4708 5819 * 4246 * 5710 4811 5108 * 6180 * 5324 27 0 * * * * * * 5295 0 0 D 28 4849 * 4375 3260 4216 * 4762 2668 3338 6588 7055 5882 * 4219 3427 4625 3629 2808 7346 6162 28 0 * * * * * * 5295 0 0 N 29 4537 * 2471 4431 6289 * 6407 3998 3712 5661 6778 2894 3101 3796 5134 4888 6015 3394 6336 5079 29 0 * * * * * * 5295 0 0 D 30 * * 514 4731 * * 3751 * 6525 * * 2830 * 5322 * 6492 * * * * 30 0 * * * * * * 5295 0 0 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 5295 0 0 L 32 3389 5285 4409 4992 * 2390 6123 6822 6010 3721 4663 5080 2916 5187 3408 3763 4383 5520 6706 5722 32 8 7447 * 3000 193 * * 5295 1000 0 D 33 * * 489 * 6299 4570 6799 * 6948 6180 7045 3376 * 6053 5954 * 5933 * * 4307 33 0 * * * * * * 5295 0 0 N 34 3990 * 5701 5927 5057 943 5454 6954 4852 5956 4584 3440 6691 6003 5230 3573 * * * * 34 0 * * * * * * 5295 0 0 S 35 4265 * 4919 3238 6289 6914 5634 * * * * 5929 * 4848 * 917 3100 * 5482 4381 35 12 6948 * 2585 263 * * 5295 1000 0 D 36 * * 60 6012 * * * * * * * * * * 5289 * * * * * 36 0 * * * * * * 5295 0 0 E 37 * * * 60 * 6047 * * * * * * * * * 5289 * * * * 37 55 7302 5000 1585 585 * * 5295 1000 0 A 38 3125 * 2468 3706 * 4950 5722 5108 4238 4530 6883 3844 4568 5865 5264 2762 3345 5899 5301 * 38 107 3951 7202 2134 373 681 1411 5335 2399 1676 P 39 4316 * 4500 3297 5722 5070 5977 6575 4525 4006 6253 2747 2259 3730 4875 4329 5046 6507 6357 4662 39 76 4281 * 974 1027 0 * 5311 2367 1461 A 40 3385 2168 4975 4244 6716 5726 5596 6607 4817 5049 * 5756 4706 3441 6180 2610 3838 4186 6343 6875 40 32 5496 * 1546 605 * * 5300 1938 0 L 41 5254 * 4878 3685 6682 6502 5400 3329 4521 3300 4341 3267 5220 5606 5631 3996 2958 3320 * 4039 41 27 6699 6773 0 * * * 5300 1000 0 C 42 * 67 * * * * * * * 6203 5847 * * * * 6115 * * * * 42 0 * * * * 0 * 5287 0 1000 H 43 2901 * 5486 3525 * 6336 4754 * 2519 5283 * 3527 6218 4784 3218 2125 6002 5758 * * 43 0 * * * * * * 5198 0 0 Q 44 4701 * 3076 3863 5277 6175 5564 * 2251 * * 2620 4391 2525 4481 3747 * * * * 44 0 * * * * * * 5185 0 0 H 45 * * * * * * 873 * * * * * * * * * * * * 1139 45 0 * * 0 * * * 4330 0 0 //