HHsearch 1.5 NAME c1cwxA_ FAM FILE c1cwxA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1cwxA_.a3m DATE Thu Jan 10 01:52:52 2013 LENG 44 match states, 44 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.1 EVD 0.4896 3.2388 SEQ >ss_dssp CCCCSCSCSSSCCCSSSTTTTTCCSSCCSSSSSSTTTSSSCCCC >sa_dssp EEEEEEEEEEEEEEEEEDCDDDCDEEDEEECADDEEEEECEEEE >ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC >ss_conf 98675012333201247100104888726644898203487788 >Consensus stxpkpqrktkrntxrrpqdikfpgggqivggvyxlprrgprlg >c1cwxA_ STNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLG >UniRef50_A9CAS8(2-45:108) Polyprotein (Fragment) n=5 Tax=Hepatitis C virus RepID=A9CAS8_9HEPC E=7e-15 s/c=1.85 id=89% cov=102% STLPKPQRKTKRNTIRRPQDIKFPGGGQIVGGVYVLPRRGPRLG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1065 0 0 T 2 * * * * * * * * * * * * * * * * 0 * * * 2 0 * * * * * * 1065 0 0 N 3 * * * * * * * * * 1000 * 1000 * * * * * * * * 3 0 * * * * * * 1065 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1065 0 0 K 5 * * * * * * * * 0 * * * * * * * * * * * 5 0 * * * * * * 1065 0 0 P 6 * * * * * * * * * * * * 0 * * * * * * * 6 0 * * * * * * 1065 0 0 Q 7 * * * * * * * * * * * * * 0 * * * * * * 7 0 * * * * * * 1065 0 0 R 8 * * * * * * * * * * * * * * 0 * * * * * 8 0 * * * * * * 1065 0 0 K 9 * * * * * * * * 0 * * * * * * * * * * * 9 0 * * * * * * 1065 0 0 T 10 * * * * * * * * * * * * * * * * 0 * * * 10 0 * * * * * * 1065 0 0 K 11 * * * * * * * * 0 * * * * * * * * * * * 11 0 * * * * * * 1065 0 0 R 12 * * * * * * * * * * * * * * 0 * * * * * 12 0 * * * * * * 1065 0 0 N 13 * * * * * * * * * * * 0 * * * * * * * * 13 0 * * * * * * 1065 0 0 T 14 * * * * * * * * * * * * * * * * 0 * * * 14 0 * * * * * * 1065 0 0 N 15 * * * * * * * 1000 * * * 1000 * * * * * * * * 15 0 * * * * * * 1065 0 0 R 16 * * * * * * * * * * * * * * 0 * * * * * 16 0 * * * * * * 1065 0 0 R 17 * * * * * * * * * * * * * * 0 * * * * * 17 0 * * * * * * 1065 0 0 P 18 * * * * * * * * * * * * 0 * * * * * * * 18 0 * * * * * * 1065 0 0 Q 19 * * * * * * * * * * * * * 0 * * * * * * 19 0 * * * * * * 1065 0 0 D 20 * * 0 * * * * * * * * * * * * * * * * * 20 0 * * * * * * 1065 0 0 V 21 * * * * * * * 1000 * * * * * * * * * 1000 * * 21 0 * * * * * * 1065 0 0 K 22 * * * * * * * * 0 * * * * * * * * * * * 22 0 * * * * * * 1065 0 0 F 23 * * * * 0 * * * * * * * * * * * * * * * 23 0 * * * * * * 1065 0 0 P 24 * * * * * * * * * * * * 0 * * * * * * * 24 0 * * * * * * 1065 0 0 G 25 * * * * * 0 * * * * * * * * * * * * * * 25 0 * * * * * * 1065 0 0 G 26 * * * * * 0 * * * * * * * * * * * * * * 26 0 * * * * * * 1065 0 0 G 27 * * * * * 0 * * * * * * * * * * * * * * 27 0 * * * * * * 1065 0 0 Q 28 * * * * * * * * * * * * * 0 * * * * * * 28 0 * * * * * * 1065 0 0 I 29 * * * * * * * 0 * * * * * * * * * * * * 29 0 * * * * * * 1065 0 0 V 30 * * * * * * * * * * * * * * * * * 0 * * 30 0 * * * * * * 1065 0 0 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 1065 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 1065 0 0 V 33 * * * * * * * * * * * * * * * * * 0 * * 33 0 * * * * * * 1065 0 0 Y 34 * * * * * * * * * * * * * * * * * * * 0 34 0 * * * * * * 1065 0 0 L 35 * * * * * * * * * 1000 * * * * * * * 1000 * * 35 0 * * * * * * 1065 0 0 L 36 * * * * * * * * * 0 * * * * * * * * * * 36 0 * * * * * * 1065 0 0 P 37 * * * * * * * * * * * * 0 * * * * * * * 37 0 * * * * * * 1065 0 0 R 38 * * * * * * * * * * * * * * 0 * * * * * 38 0 * * * * * * 1065 0 0 R 39 * * * * * * * * * * * * * * 0 * * * * * 39 0 * * * * * * 1065 0 0 G 40 * * * * * 0 * * * * * * * * * * * * * * 40 0 * * * * * * 1065 0 0 P 41 * * * * * * * * * * * * 0 * * * * * * * 41 0 * * * * * * 1065 0 0 R 42 * * * * * * * * * * * * * * 0 * * * * * 42 0 * * * * * * 1065 0 0 L 43 * * * * * * * * * 0 * * * * * * * * * * 43 0 * * * * * * 1065 0 0 G 44 * * * * * 0 * * * * * * * * * * * * * * 44 0 * * 0 * * * 1065 0 0 //