HHsearch 1.5
NAME  c1ckxA_
FAM   
FILE  c1ckxA_
COM   /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1ckxA_.a3m 
DATE  Fri Mar 12 11:07:33 2010
LENG  26 match states, 26 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.4956  4.0491 
SEQ
>ss_dssp
CCCHHHHHHHHHHHHHHHTHHHHTCC
>sa_dssp
EECEEEDEEEEBEDEEEEEEEEEEEE
>ss_pred
CCCCCCCCEEEEEEECCEEEEEEECC
>ss_conf
97422011796665111134200139
>Consensus
mpgtixxnixfgxxydeyryxsvika
>c1ckxA_
MPGTIKENIIFGVSYDEYRYRSVIKA
>UniRef50_UPI00016EA413(438-463:1443) UPI00016EA413 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016EA413  E=2e-07 s/c=2.17 id=74% cov=104%
MPGTIRDNILFGLTYDEYRYTSVIKA
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
M 1    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1173	0	0	

P 2    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1173	0	0	

G 3    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1173	0	0	

T 4    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	4
       0	*	*	*	*	*	*	1173	0	0	

I 5    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1173	0	0	

K 6    *	*	*	*	*	*	*	*	1000	*	*	*	*	*	1000	*	*	*	*	*	6
       0	*	*	*	*	*	*	1173	0	0	

E 7    *	*	1000	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1173	0	0	

N 8    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1173	0	0	

I 9    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1173	0	0	

I 10   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1173	0	0	

F 11   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1173	0	0	

G 12   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1173	0	0	

V 13   *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	13
       0	*	*	*	*	*	*	1173	0	0	

S 14   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	14
       0	*	*	*	*	*	*	1173	0	0	

Y 15   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	15
       0	*	*	*	*	*	*	1173	0	0	

D 16   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1173	0	0	

E 17   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1173	0	0	

Y 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	18
       0	*	*	*	*	*	*	1173	0	0	

R 19   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	19
       0	*	*	*	*	*	*	1173	0	0	

Y 20   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	20
       0	*	*	*	*	*	*	1173	0	0	

R 21   *	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	1000	*	*	*	21
       0	*	*	*	*	*	*	1173	0	0	

S 22   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	22
       0	*	*	*	*	*	*	1173	0	0	

V 23   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	23
       0	*	*	*	*	*	*	1173	0	0	

I 24   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1173	0	0	

K 25   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1173	0	0	

A 26   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	0	*	*	*	1173	0	0	

//