HHsearch 1.5 NAME c1cfhA_ FAM FILE c1cfhA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c1cfhA_.a3m DATE Thu Jan 10 05:00:21 2013 LENG 47 match states, 47 columns in multiple alignment FILT 65 out of 69 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.4979 3.1945 SEQ >ss_dssp CCCSSCSSCSSCCCCCSCSSSCCCSSSCSSSCTTTTTTTTGGGGSCC >sa_dssp EECEEDEDEEEEEEEEEDEEEEEDEEECEEEDEEEEEEEEECEEEEE >ss_pred CCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCC >ss_conf 97203655057635688875206999999985095999999897569 >Consensus xNxxxlEExxxGnLERECxEExCxxEEAREvFexxxxTxxFWxxYxD >c1cfhA_ YNSGKLEEFVQGNLERECMEEKCSFEEAREVFENTERTTEFWKQYVD >UniRef50_Q008W3(42-83:323) Gamma-carboxyglutamic acid protein 3 splice variant A n=3 Tax=Ciona intestinalis RepID=Q008W3_CIOIN E=6e-05 s/c=1.15 id=56% cov=91% -NSG-FEEFAKGNFEQECVEEICNYEELREVYENTAQTNAKWDE--- >UniRef50_UPI000155D35E(124-166:701) PREDICTED: similar to prothrombin protein n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155D35E E=1e-14 s/c=1.89 id=57% cov=94% -NKGYLEELRKGNLERECLEELCSYEEAFEALESQDKTIEFWVK--- >UniRef50_Q08BQ2(46-91:196) Zgc:152997 n=3 Tax=Clupeocephala RepID=Q08BQ2_DANRE E=2e-13 s/c=1.67 id=53% cov=100% -NTGDEETKLPANLERECLEEVCDYEEAREVFQDNYRTDIFWSVYID >UniRef50_Q568L1(52-98:210) Zgc:110234 n=8 Tax=Clupeocephala RepID=Q568L1_DANRE E=1e-16 s/c=1.87 id=52% cov=102% FNRFDFEIFTPGNLERECIEEICNYEEAREVFEDIPKTNDFWRTYTE >UniRef50_UPI0000D9D61C(67-109:395) PREDICTED: protein C (inactivator of coagulation factors Va and VIIIa) isoform 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9D61C E=5e-13 s/c=1.76 id=52% cov=94% ----FLEELRPSSLERECVEEICDFEEAKEIFQNVDDTLAFWSKHVD >UniRef50_A4QP82(50-92:431) Zgc:163025 protein n=11 Tax=Clupeocephala RepID=A4QP82_DANRE E=1e-12 s/c=1.72 id=50% cov=94% ----FLEELKLRDLERECLEEICSYEEAREIFTVPDQLGDFWKRYTE >UniRef50_Q008W6(25-71:556) Gamma-carboxyglutamic acid protein 1 n=2 Tax=Ascidiacea RepID=Q008W6_CIOIN E=1e-11 s/c=1.51 id=57% cov=98% -NSWhHFEEAQQGNIERECIEEVCSWEEAREAFETDVAgLNQFWNQYT- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Y 1 * * * * 2838 * * * * * * * * * * * * * 2832 474 1 0 * * * * * * 1832 0 0 N 2 * * * * * * * * * * * 0 * * * * * * * * 2 0 * * * * * * 2545 0 0 S 3 3971 * * * 5077 * 4230 4948 3967 * * * * * 2820 1120 2956 * * 5246 3 0 * * * * * * 2629 0 0 G 4 * * * * 2363 1077 * 5315 * 4801 * * * * * * * * 2789 2988 4 133 5078 4095 0 * * * 2592 1000 0 K 5 5655 * 2435 * 1028 5676 3833 * 5824 3627 * * * * * 5663 * 4587 4803 5676 5 83 4580 6137 0 * 0 * 2648 1000 1000 L 6 * * * 5030 1747 * * 4479 * 751 4947 * * * * * * * * * 6 0 * * * * 0 * 2693 0 1000 E 7 * * * 0 * * * * * * * * * * * * * * * * 7 0 * * * * * * 2697 0 0 E 8 * * * 236 * * * 5921 * 3265 * * * * * * 5042 * * * 8 0 * * * * * * 2697 0 0 F 9 4111 * * * 2388 * * 2912 5046 1685 3378 * * * * 6102 4600 3207 5914 * 9 0 * * * * * * 2694 0 0 V 10 4486 * * 6136 4040 * * * 1797 2765 6180 * * 4126 2367 4835 3062 6416 6146 * 10 0 * * * * * * 2694 0 0 Q 11 5220 * * 3685 * * * * 2644 4127 * * 1432 1776 * * 6011 * * * 11 0 * * * * * * 2694 0 0 G 12 5046 * 4981 * * 203 * * * * * * 5717 * 5269 5355 * * * * 12 0 * * * * * * 2694 0 0 N 13 * * 3771 * * * 3852 * * * * 533 * * * 2750 5813 * * * 13 0 * * * * * * 2693 0 0 L 14 * * * * 4660 * * 3165 * 415 4252 * * 5062 * * * 5903 * * 14 0 * * * * * * 2778 0 0 E 15 * * * 33 * * * * * * * * * 5449 * * * * * * 15 0 * * * * * * 2778 0 0 R 16 * * * * * * * * 4498 * * * * 3220 237 * * * * * 16 0 * * * * * * 2778 0 0 E 17 * * * 101 * * * * * * * * * * * * * 3884 * * 17 0 * * * * * * 2778 0 0 C 18 * 0 * * * * * * * * * * * * * * * * * * 18 0 * * * * * * 2778 0 0 M 19 5989 * * * * * * 3025 4415 2387 2708 3389 * * 4720 * * 2426 5882 2902 19 0 * * * * * * 2778 0 0 E 20 * * * 0 * * * * * * * * * * * * * * * * 20 0 * * * * * * 2778 0 0 E 21 * * * 101 * * * * * * * 3884 * * * * * * * * 21 0 * * * * * * 2778 0 0 K 22 6803 * * * 5123 * 6432 1588 3085 3307 * 5806 * 4610 2980 5989 3379 3294 * * 22 0 * * * * * * 2778 0 0 C 23 * 0 * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 2778 0 0 S 24 * * 2638 * * * * * * * * 2016 * * * 1242 2867 4956 * * 24 0 * * * * * * 2778 0 0 F 25 * * * * 2348 * 5059 * 3208 4070 5931 * * 4600 6109 * * * 4223 1058 25 0 * * * * * * 2778 0 0 E 26 * * * 0 * * * * * * * * * * * * * * * * 26 0 * * * * * * 2778 0 0 E 27 * * * 101 * * * * * * * * * 3884 * * * * * * 27 0 * * * * * * 2778 0 0 A 28 127 * * * * * * * * 4660 * * * * * * * 4479 * * 28 0 * * * * * * 2778 0 0 R 29 5227 * * * 4158 * * * 3824 * * 5989 * 6183 321 5903 * * * * 29 0 * * * * * * 2778 0 0 E 30 3884 * * 101 * * * * * * * * * * * * * * * * 30 0 * * * * * * 2778 0 0 V 31 3388 5092 * * 3382 * * 1651 * * * * * * * * 6266 1245 * 5266 31 0 * * * * * * 2778 0 0 F 32 * * * * 174 * * * * 4496 * * * * * 5062 * * * 4660 32 0 * * * * * * 2778 0 0 E 33 * * 5062 586 * 5777 4131 * 4673 * * * * 2734 * * 5321 6164 * * 33 21 6125 * 0 * * * 2778 1000 0 N 34 * * 1246 * * * 6098 * * * * 1503 * 6104 6305 3571 3746 5321 * * 34 0 * * * * * * 2778 0 0 T 35 5048 * 1861 5097 * * * 5359 3726 * * 3091 4248 3818 4386 3465 3202 3693 * * 35 0 * * * * * * 2778 0 0 E 36 3907 * 2669 1342 6107 * * 6184 5216 * * * 3199 4820 * * 4738 4337 * 3392 36 0 * * * * * * 2778 0 0 R 37 3555 * 4752 3977 * 6125 6194 4574 1582 5266 5848 5777 * 3187 2601 6107 4989 5157 * * 37 19 6240 * 0 * * * 2778 1000 0 T 38 3356 * * * * * * * * 3838 * * * * * * 265 * * * 38 0 * * * * * * 2778 0 0 T 39 5909 * 2101 3263 * 5306 * 4469 3227 3328 3734 2282 * * 4955 * 5280 5033 * * 39 0 * * * * * * 2781 0 0 E 40 2609 * 4047 1823 * * * 3206 3816 5227 5829 * * 3943 3426 * 5576 5277 * 3957 40 0 * * * * * * 2781 0 0 F 41 * * * * 105 * * * 3829 * * * * * * * * * * * 41 0 * * * * * * 2781 0 0 W 42 * * * * * * * * * * * * * * * * * * 96 3957 42 0 * * * * * * 2781 0 0 K 43 2548 * 3854 3769 5208 * 6212 4251 2744 5416 5979 4159 3957 4939 4051 3251 4902 4705 * 6074 43 0 * * * * * * 2781 0 0 Q 44 * * 5015 3322 * 4057 5144 5182 2173 6008 * 5817 * 3936 3178 3757 3320 2753 * * 44 0 * * * * * * 2777 0 0 Y 45 * * * * 4725 * 5365 * * * * * * * * * * * * 92 45 0 * * * * * * 2745 0 0 V 46 * * * * 5633 * 5423 2592 4846 3121 3891 * * * 5654 4393 2035 2270 * 4193 46 0 * * * * * * 2780 0 0 D 47 * * 142 3411 * * * * * * * * * * * * * * * * 47 0 * * 0 * * * 2560 0 0 //