HHsearch 1.5 NAME c1b0xA_ FAM FILE c1b0xA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1b0xA_.a3m DATE Fri Mar 12 10:57:25 2010 LENG 72 match states, 72 columns in multiple alignment FILT 108 out of 723 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.0 EVD 0.4395 0.9423 SEQ >ss_dssp CCSSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHGGGC >sa_dssp EDEDEDBCEBAEEBEBDEBDECAEECEBEDBECACEBDEECACEBDAEDEECBEDACDCBEECEDEDEEEEE >ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 984424999999669189999999879962899984799999973888967999999999999999997279 >Consensus xxxxxsVxxWLxxiglxxYxxxFxxxxixxxxxlxxlxxxdLxxlGIxxxxhRxkilxaIxxLrxxxxxxxg >c1b0xA_ FSAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQMHG >UniRef50_D0NH81(106-174:361) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NH81_PHYIN E=0.0003 s/c=0.68 id=21% cov=92% ------VLEWLTAIGLIEFQIGFEFHQVTG-KMLLNLSPAGYEKLGVFKLSARNRLLAEMEQIRAQRIKQNG >UniRef50_A7SG04(15-73:125) Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7SG04_NEMVE E=0.0004 s/c=0.78 id=18% cov=76% ------VAEWIEYLGFKQYRRPFSDNLVNG-RRLIQVDASTLPRMGVTDFEHIKFISKKIR----------- >UniRef50_A0DJ00(84-144:388) Chromosome undetermined scaffold_52, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0DJ00_PARTE E=5e-06 s/c=0.86 id=19% cov=86% ------IESFLKSIKLDTYVQKFKENGFEELDILFDIQKEQLQQMEI-PLGHQIRLMKKIRELKQSVE---- >UniRef50_Q9VMJ4(47-108:944) CG9098, isoform A n=8 Tax=melanogaster group RepID=Q9VMJ4_DROME E=2e-05 s/c=0.81 id=22% cov=88% -----SISEWLDLLELQQYEGNL--QEFSTVDDVVDITDKELKQFGVRGA-HRQRMVNSLLGVRAKRRQS-- >UniRef50_Q9VU88(363-423:680) CG10743, isoform A n=9 Tax=Sophophora RepID=Q9VU88_DROME E=0.0007 s/c=0.74 id=19% cov=72% ---------WLAYMGLGCYEDNCRKwlNANPSVSFFTASPVDIERELNLKMPLHRKKILLAI------------ >UniRef50_UPI000179D610(336-401:410) UPI000179D610 related cluster n=1 Tax=Bos taurus RepID=UPI000179D610 E=0.0001 s/c=0.72 id=21% cov=93% -PETSPLETFLASLHMEDFTSLLRQEKID-LEALMLCSDLDLRSISV-PLGPRKKILGAVRRRRQALER--- >UniRef50_A0CUC0(91-159:513) Chromosome undetermined scaffold_28, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0CUC0_PARTE E=2e-06 s/c=0.78 id=16% cov=94% --SLEDVSQWLNFVGLQQLQTTFTKNSIDG-SCLELIEENDLiEDLGITNKIVRKKLMHWLKTgLKEYASHI-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 1547 * * * * * * * * * * * * * * 604 1 0 * * * * * * 3043 0 0 S 2 * * * * * * 3521 * * * * 2468 1878 * * 1636 2854 * * * 2 0 * * * * * * 4091 0 0 A 3 3650 * * 4282 * 4600 * 3411 * 4826 * * 4780 * * 1381 2353 3600 * * 3 0 * * * * * * 5278 0 0 V 4 3952 * * * 2433 * * 4142 * 2490 3167 * * * * * 4777 1443 * * 4 0 * * * * * * 5928 0 0 V 5 4151 * 3599 4259 * 5403 * 4081 * 5609 * 3758 5123 3504 4155 1433 3823 5805 * * 5 0 * * * * * * 6242 0 0 S 6 5932 * 3039 3845 * 4877 * * * * * 3597 4805 5725 * 1669 1815 * 5479 * 6 71 4373 * 1421 674 * * 6825 1676 0 V 7 6233 * * * * * * 2526 * 2691 * * * * * * 4470 706 * * 7 0 * * * * * * 7103 0 0 G 8 2979 5534 5048 2662 * 3333 4548 * 5129 4649 * 4622 4809 3910 4327 3064 4238 3847 * 5772 8 0 * * * * * * 7122 0 0 D 9 3833 * 3029 1492 * * 6599 6597 4274 4560 5498 3773 * 3520 3825 4895 5549 5105 * * 9 27 6962 6562 2000 415 * * 7153 1000 0 W 10 * * * * 2961 * * 5567 * 5164 * * * * * * * 4567 358 * 10 0 * * * * 0 * 7278 0 1000 L 11 * * * * * * * 4021 * 244 3954 * * * * * * 5090 * * 11 0 * * * * * * 7306 0 0 Q 12 4257 * 3166 2126 5760 5785 6000 * 2828 5891 5990 3567 5755 3563 4169 4373 4082 5458 * 6902 12 12 6892 * 1585 585 * * 7306 1000 0 A 13 3198 * 3396 3889 4577 4345 5967 6702 6868 4639 7064 4817 * 3678 3739 2037 3499 6235 * 5522 13 0 * * * * * * 7306 0 0 I 14 4813 * * 5258 3582 * 6651 1734 5176 1693 5172 4904 * 6557 5454 * 6608 3286 * * 14 13 6855 * 2585 263 * * 7306 1000 0 K 15 5707 5832 4277 6608 6706 1099 3935 * 3387 * 5016 3254 * 5365 3776 6686 5552 * * * 15 77 4275 * 1578 589 * * 7324 2596 0 M 16 6406 4223 * * 3066 * 6091 * 6706 908 2357 6616 * 7064 6819 * * 6866 * 5160 16 10 7138 * 2000 415 * * 7324 1000 0 D 17 5749 6091 3143 2020 * 2717 4850 6276 4840 5562 * 6160 3599 4148 * 2521 6385 * * 6369 17 13 6768 * 1000 1000 * * 7324 1000 0 R 18 5224 6183 3825 2617 * 6547 4896 6768 2483 6524 5334 6336 * 1785 3509 5522 5153 * * 5814 18 0 * * * * * * 7324 0 0 Y 19 6405 * * * 4560 * 4554 * * 3675 6113 6545 * * * * * 6388 * 344 19 0 * * * * * * 7324 0 0 K 20 2715 5306 * 4152 5747 5564 * 2724 3526 3997 5803 6246 * 4805 3746 3717 4042 3385 6545 4607 20 40 6405 5984 0 * * * 7324 1000 0 D 21 5740 * 2460 3047 * 4450 5472 6257 4821 6068 * 3451 2684 4597 3805 3430 4466 * 6908 4622 21 13 6790 * 4524 64 0 * 7321 1000 1265 N 22 3538 5956 * 4733 * 6276 4715 4066 3716 3177 4961 2417 5682 5111 3803 3846 3229 4402 * * 22 0 * * * * * * 7324 0 0 F 23 6117 4797 * * 338 * * 5195 * 3635 4300 * * * * * * * * * 23 15 * 6608 * * * * 7324 0 0 T 24 3192 * 6689 2867 6151 * 4461 4287 3083 2668 5549 5868 * 5861 3381 3747 3701 4547 * 6386 24 0 * * * * * 0 7306 0 1000 A 25 3426 * 3600 2470 5512 5969 5335 * 2782 6519 5478 4555 * 3371 3007 4579 4265 5562 * 5373 25 45 6171 5866 1000 1000 0 * 7306 1000 1000 A 26 3031 * 5597 4417 5671 6653 2445 * 4372 6886 6446 1794 * 3423 4471 3990 * * 6106 5346 26 0 * * * * 954 1047 7308 0 1748 G 27 4794 6031 3597 3059 * 1515 4598 * 3677 4916 * 3823 * 5510 4062 4792 6454 5173 5981 * 27 11 * 7047 * * * 0 7314 0 1000 Y 28 * 5512 * * 2911 * * 1584 5386 4043 5370 6179 * * * * 6113 2330 * 2509 28 69 * 4419 * * 1000 1000 7314 0 1173 T 29 5366 * 1344 4638 5299 * 5487 5206 3873 6477 * 3347 6157 5383 5258 4376 2965 5013 * 5821 29 111 * 3758 * * 243 2689 7294 0 3138 T 30 6178 6826 3084 4498 * 1416 6621 5567 6483 6612 6466 4603 6584 6661 * 3127 2594 4843 * * 30 308 * 2378 * * 0 * 7290 0 3619 L 31 3894 5274 4722 5462 6702 4447 * 3919 3807 2013 2742 6351 6049 4752 5688 6421 4956 3459 4744 * 31 65 6314 5002 3170 170 0 * 7235 1000 4856 E 32 5595 * 2882 1738 * 6804 5989 * 4383 6582 6019 4395 6877 4425 2806 2784 5113 5287 * * 32 29 * 5655 * * 1273 771 7320 0 1827 A 33 3544 5772 3282 5203 3887 5839 5834 4160 4355 2305 4858 5723 * 3299 4759 3865 4247 4538 * * 33 0 * * * * 815 1212 7307 0 2270 V 34 * 4175 * 6110 4244 * * 2882 5613 919 4735 * * 6813 * * * 2775 * * 34 15 6636 * 1000 1000 0 * 7319 1000 1331 V 35 3341 5081 6348 6642 6981 5868 4781 4300 4344 2106 3621 4688 5649 4953 3781 3331 4551 3863 * * 35 41 5790 6673 1128 883 * * 7327 1698 0 H 36 3678 * 3390 3230 5661 3984 5590 6039 6583 2517 4119 3929 * 3057 4735 4349 4757 * * 4356 36 0 * * * * 0 * 7318 0 1000 M 37 6003 5901 4448 6335 6348 * 6831 2325 5173 1479 2915 5621 * * * 4596 4262 4160 * * 37 13 6782 * 1000 1000 * * 7327 1000 0 S 38 6831 * 2437 3911 * 4366 5985 7074 3988 6498 * 4155 5250 5510 4646 2688 1889 7112 5817 * 38 29 5672 * 1761 504 * * 7327 1642 0 Q 39 3587 6929 2803 1704 * 6919 4175 6266 5306 5670 4540 4359 4406 4850 4799 4883 5772 4265 6118 6827 39 13 * 6831 * * * * 7327 0 0 D 40 3722 * 2454 2610 * 4453 5235 * 3367 5601 6856 4392 6947 3190 * 2882 5021 4739 * 6596 40 61 7051 4876 0 * 0 * 7323 1000 1000 D 41 5878 * 1210 3781 6483 5218 5022 4147 4699 3128 * 4575 * 5141 5485 5120 4093 5662 * * 41 43 5088 * 3331 151 0 * 7276 2137 2212 L 42 6450 * * 5152 4486 * * 4699 5236 510 5435 * * 6240 4977 5101 * * * 4281 42 50 4869 * 0 * * * 7327 1962 0 A 43 5248 * 4005 2420 * 6403 5621 5989 2131 4201 5993 3900 5018 3612 3910 4602 3804 6498 * 6916 43 23 6003 * 0 * * * 7327 1265 0 R 44 3810 6736 2922 2041 5194 5449 6204 6317 3222 4948 * 4555 * 3618 3633 3787 5143 5435 * * 44 41 5144 * 417 1995 * * 7327 2183 0 I 45 5679 5621 * * 5068 * * 2148 * 1060 2460 * * * * * * 4523 * * 45 23 * 5994 * * * * 7327 0 0 G 46 * 6586 4809 5208 * 414 * * 4045 * * 3662 * * 6342 5343 * * * * 46 21 6104 * 1000 1000 0 * 7318 1000 1837 I 47 6113 * * * 5475 * * 892 * 3686 4207 * * * * * * 1774 * * 47 88 * 4083 * * * * 7327 0 0 T 48 4368 5279 3834 4105 6231 4509 5414 6742 2691 5313 * 5709 4737 4812 3932 3561 1933 5428 * * 48 39 6184 6276 0 * 0 * 7294 1000 3435 A 49 3867 5278 2753 4649 * 6602 4894 * 2652 4985 5539 3377 3526 4413 5196 2898 5093 5294 * 6043 49 38 * 5257 * * 0 * 7314 0 1000 I 50 4023 * 6652 4331 3560 6144 6481 3601 5815 2485 3297 * 2430 6704 5474 4111 4069 4515 * 6750 50 42 * 5110 * * 0 * 7327 0 1877 T 51 4762 * 4914 3679 6387 1214 4955 4169 5922 3394 6087 4827 * 5296 * 3202 6049 6616 * * 51 14 * 6704 * * 0 * 7296 0 2024 H 52 3536 * 2632 5372 * * 918 * 4896 5254 * 6604 4643 4473 6159 5659 * 6635 * * 52 0 * * * * 0 * 7328 0 1000 Q 53 * 5201 * * * * 5207 3704 4880 4904 6097 * * 3155 673 6500 * 4771 * * 53 10 * 7152 * * * * 7327 0 0 N 54 4586 * 4313 4793 * 6676 4894 4830 1673 3380 6832 3773 5772 3731 2770 * 6033 4844 * 6451 54 0 * * * * 0 * 7330 0 1000 K 55 3756 * 5381 4655 6017 * 7562 3906 1651 4603 * * * 7520 1632 5721 6403 4147 * * 55 0 * * * * * * 7327 0 0 I 56 * * * * 4509 * * 1093 * 1526 4630 * * * * * * 3327 * * 56 0 * * * * * * 7327 0 0 L 57 4014 6945 * 5523 4867 5616 6954 4205 4494 1144 3751 * * 4021 4314 5373 5345 4927 5223 * 57 0 * * * * * * 7314 0 0 S 58 3840 6717 4045 3704 * 5283 4527 * 2704 3098 * 3470 * 3840 2716 3797 5358 5475 * 6267 58 0 * * * * * * 7300 0 0 S 59 1279 5520 6088 3252 * 4199 4921 7018 4288 5539 * 4964 * 5325 4966 2553 * 6782 6625 * 59 13 6786 * 1585 585 * * 7296 1000 0 V 60 4085 * * * 5325 * * 1064 * 2479 5581 * * * * 5652 6357 2283 * * 60 12 6860 * 1000 1000 * * 7296 1000 0 Q 61 3482 6331 4121 3197 * * 4281 * 2561 4940 6072 5193 * 2353 2638 4473 6400 6300 * 6652 61 0 * * * * * * 7269 0 0 A 62 4358 * 3584 2962 6314 4224 5301 5274 2817 4141 * 4251 * 3155 3519 4271 4724 3948 * 5853 62 16 6533 * 0 * * * 7229 1000 0 M 63 5362 * * * 4360 * * 3111 * 708 3831 * * * 5716 * 6088 4404 6281 4833 63 10 7112 * 2000 415 * * 7226 1000 0 R 64 * * * 6133 * 5036 3538 * 1735 6280 * 6544 * 4253 1157 5021 6210 * * * 64 25 * 5857 * * * * 6966 0 0 T 65 3168 * 2385 2842 * 4713 * 4722 4287 * * 5638 * 2856 4965 2829 3785 5203 * * 65 54 4769 * 2261 337 * 0 6774 1705 1000 Q 66 4196 * 4391 2339 * * 4042 * 2567 * * * * 2231 3883 3739 6505 4955 * 3802 66 0 * * * * 0 * 6533 0 1000 M 67 4488 * 5515 * 3994 * * 2538 3716 2115 3723 5602 * 4166 4219 5212 5529 3064 * 5811 67 0 * * * * * * 6691 0 0 Q 68 3583 * * 1855 * * 5482 5128 5551 5558 3439 4584 * 2669 3606 4178 3814 4413 * * 68 0 * * * * * * 6400 0 0 Q 69 * * 5149 2534 * * 5135 5208 3302 * 5502 5135 4860 1514 3215 3689 5512 * * * 69 0 * * * * * * 6278 0 0 M 70 3113 * 4505 * * * * 3003 * 1762 4780 * * 4393 * 2331 4503 3412 * * 70 0 * * * * * * 5716 0 0 H 71 3904 * * 2237 * * 2901 * * * * 1482 * 2766 * * * * * 3605 71 0 * * * * * * 4784 0 0 G 72 * * * * * 0 * * * * * * * * * * * * * * 72 0 * * 0 * * * 3622 0 0 //