HHsearch 1.5 NAME c1afoB_ FAM FILE c1afoB_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1afoB_.a3m DATE Mon Mar 8 15:24:34 2010 LENG 40 match states, 40 columns in multiple alignment FILT 6 out of 10 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.6 EVD 0.4971 2.3825 SEQ >ss_dssp CCCSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >sa_dssp EEEEEEEBEDEEDDEEDDEDDDEECEEEEEDDDDEEEEEE >ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 9766331337999999999999999999999999998509 >Consensus vqlxHxFsxxxixlIIlgVMAGiIGtILlisYxirrlxKk >c1afoB_ VQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK >UniRef50_P14221(61-100:144) Glycophorin-A n=6 Tax=Catarrhini RepID=GLPA_MACFU E=2e-10 s/c=1.66 id=80% cov=102% VQLVHEFSELVIALIIFGVMAGVIGTILFISYGSRRLIKK >UniRef50_P02726(40-79:120) Glycophorin-A n=1 Tax=Equus caballus RepID=GLPA_HORSE E=1e-06 s/c=1.36 id=63% cov=102% LQLAHDFSQPVITVIILGVMAGIIGIILLLAYVSRRLRKR >UniRef50_P06028(50-90:91) Glycophorin-B n=14 Tax=Homininae RepID=GLPB_HUMAN E=3e-05 s/c=1.21 id=72% cov=98% -QLVHRFTVPApvvIILIILCVMAGIIGTILLISYTIRRLIK- >UniRef50_Q28914(81-122:123) Glycophorin-B n=19 Tax=Homininae RepID=GLPB_PANTR E=3e-05 s/c=1.18 id=75% cov=100% VQPVHPFSRPApvvIILIILCVMAGVIGTILLISYGIRLLIK- >UniRef50_P14220(100-137:168) Glycophorin-A n=4 Tax=Mus musculus RepID=GLPA_MOUSE E=0.0005 s/c=1.19 id=59% cov=98% --IQHDFPALVMILIILGVMAGIIGTILLISYCISRMTKK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * * * 1794 * * * * * * * 491 * * 1 0 * * * * * * 1438 0 0 Q 2 * * * * * * * * * * * * * 0 * * * * * * 2 0 * * * * * * 1468 0 0 L 3 * * * * * * * 2336 * 632 * * 2674 * * * * * * * 3 0 * * * * * * 1611 0 0 A 4 1572 * * * * * * * * * * * * 2336 * * * 1103 * * 4 0 * * * * * * 1611 0 0 H 5 * * * * * * 0 * * * * * * * * * * * * * 5 0 * * * * * * 1611 0 0 H 6 * * 1356 2658 * * 2797 * * * * * 2674 * 2733 * * * * * 6 0 * * * * * * 1611 0 0 F 7 * * * * 0 * * * * * * * * * * * * * * * 7 0 * * * * * * 1611 0 0 S 8 * * * * * * * * * * * * 2336 * * 618 2733 * * * 8 0 * * * * * * 1611 0 0 E 9 2336 * * 1725 * * * * * * * * * 2378 2674 * * 2733 * * 9 0 * * * * * * 1611 0 0 P 10 * * * * * * * * * 1488 * * 636 * * * * * * * 10 0 * * * * * * 1611 0 0 E 11 1703 * * 2797 * * * * * * * * * * * * * 865 * * 11 529 1703 * 1585 585 * * 1611 1136 0 I 12 * * * * * * * 319 * * 2336 * * * * * * * * * 12 0 * * * * * * 1611 0 0 T 13 2658 * * * * * * 985 * * * * * * * * 1572 * * * 13 0 * * * * * * 1611 0 0 L 14 * * * * * * * * * 308 * * * * * * * 2378 * * 14 0 * * * * * * 1611 0 0 I 15 * * * * * * * 0 * * * * * * * * * * * * 15 0 * * * * * * 1611 0 0 I 16 * * * * * * * 0 * * * * * * * * * * * * 16 0 * * * * * * 1611 0 0 F 17 * * * * 1725 * * * * 520 * * * * * * * * * * 17 0 * * * * * * 1611 0 0 G 18 * 1703 * * * 529 * * * * * * * * * * * * * * 18 0 * * * * * * 1611 0 0 V 19 * * * * * * * * * * * * * * * * * 0 * * 19 0 * * * * * * 1611 0 0 M 20 * * * * * * * * * * 0 * * * * * * * * * 20 0 * * * * * * 1611 0 0 A 21 0 * * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1611 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 1611 0 0 V 23 * * * * * * * 887 * * * * * * * * * 1123 * * 23 0 * * * * * * 1611 0 0 I 24 * * * * * * * 0 * * * * * * * * * * * * 24 0 * * * * * * 1611 0 0 G 25 * * * * * 0 * * * * * * * * * * * * * * 25 0 * * * * * * 1611 0 0 T 26 * * * * * * * 2378 * * * * * * * * 308 * * * 26 0 * * * * * * 1611 0 0 I 27 * * * * * * * 0 * * * * * * * * * * * * 27 0 * * * * * * 1611 0 0 L 28 * * * * * * * * * 0 * * * * * * * * * * 28 0 * * * * * * 1611 0 0 L 29 * * * * 2658 * * * * 249 * * * * * * * * * * 29 0 * * * * * * 1611 0 0 I 30 * * * * * * * 308 * 2378 * * * * * * * * * * 30 0 * * * * * * 1611 0 0 S 31 2378 * * * * * * * * * * * * * * 308 * * * * 31 0 * * * * * * 1611 0 0 Y 32 * * * * * * * * * * * * * * * * * * * 0 32 0 * * * * * * 1611 0 0 G 33 * 2336 * * * 1123 * * * * * * * * * * 2733 2378 * * 33 0 * * * * * * 1611 0 0 I 34 * * * * * * * 623 * * * * * * * 1511 * * * * 34 0 * * * * * * 1611 0 0 R 35 * * * * * * * * * * * * * * 319 2336 * * * * 35 0 * * * * * * 1611 0 0 R 36 * * * * * * * * * 2674 * * * * 246 * * * * * 36 0 * * * * * * 1611 0 0 L 37 * * * * * * * * * 319 2336 * * * * * * * * * 37 0 * * * * * * 1611 0 0 I 38 * * * * * * * 714 * * * * * * 2378 * 2336 * * * 38 0 * * * * * * 1611 0 0 K 39 * * * * * * * * 0 * * * * * * * * * * * 39 0 * * * * * * 1611 0 0 K 40 * * * * * * * * 449 * * * * * 1902 * * * * * 40 0 * * 0 * * * 1523 0 0 //