Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank45Aligned Residues368
% Identity27%Templated1elja_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.85

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MKIEEGKLVIWINGDKGY. NGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPD
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Template Sequence  MKIEEGKVVIWHAMQPNELEVFQSLAEEYMALPEVEIVFEQKPNLEDALKAAIPTGQGPD
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TTTTTT
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   1........10.........20.........30.........40.........50.........60
 
   60.........70.........80.. .......90.........100.........110.......
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Query Sequence  IIFWAHDRFGGYAQSGLLAEITP. . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLI
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Template Sequence  LFIWAHDWIGKFAEAGLLEPIDEYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAETVAII
Template Known Secondary structure  GGGTT
B


TTT

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   62.......70.........80.........90.........100.........110.........120.
 
   118.120.........130.........140.........150......... 160.........170......
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Query Sequence  YNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW. PLIAADGGYAFKYENGK
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Template Sequence  YNKEMVSEPPKTFDEMKAIMEKYYDPANEKYGIAWPINAYFISAIAQAFGGYYFDDKTEQ
Template Known Secondary structure  TTT
SS

SS
BGGGTB
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B


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   122.......130.........140.........150.........160.........170.........180.
 
   177..180.........190.........200.........210.........220.........230......
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Query Sequence  YDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNI
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Template Sequence  . . . . . PGLDKPETIEGFKFFFTEIWPYMAPTG. DYNTQQSIFLEGRAPMMVNGPWSINDV
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TTSTGGGS
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GGG
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   182.......190.........200........ .210.........220.........230.....
 
   237..240.........250..... ....260.........270.........280.........290..
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Query Sequence  DTSKVNYGVTVLPTFKGQP. . . . SKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLE
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Template Sequence  KKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIK
Template Known Secondary structure  TT





TT



BTT
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   236...240.........250.........260.........270.........280.........290.....
 
   293......300.........310 .........320.........330.........340.........350.
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Query Sequence  AVNKDKPLGAVALKSYEE. ELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINA
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Template Sequence  TLALELGYIPVLTKVLDDPEIKNDPVIYGFGQAVQHAYLMPKSPKMSAVWGGVDGAINEI
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B

BGGGGG
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   296...300.........310.........320.........330.........340.........350.....
 
   352...... .360.........370....
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Query Sequence  ASGRQTV. . DAALAAAQTNAAAKVD
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Template Sequence  LQDPQNADIEGILKKYQQEILNNMQ
Template Known Secondary structure  TSTTT



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   356...360.........370.........380
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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