Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.96%DateSun Sep 7 16:46:09 BST 2014
Rank100Aligned Residues267
% Identity21%Templated1xvya_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.74

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30......... 40.........50.........60.....
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Query Sequence  LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  IVIYNAQHE. . NLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENS
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   4.....10.. .......20.........30.........40.........50.........60.
 
   66...70.........80.........90.........100.........110.........120.....
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Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
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Template Sequence  PAMVLVDNAKLFAPLDA. . . . . . . ATLAQVEPQYRPSHGRWIGIAARSTVFVYNPAKLSD
Template Known Secondary structure  TT
B



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   62.......70........ .80.........90.........100.........110....
 
   126 ...130.........140.........150.........160.........170.........180...
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Query Sequence  P. . PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVG
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Template Sequence  AQLPKSLLDLAK. . . . PEWKGRWAASPSGADFQAIVSALLELKGE. . . . . . . . . . . . . . .
Template Known Secondary structure  GG

SSGGGGGS....GGGTTS
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   115....120...... ...130.........140.........150.....
 
   184.....190.........200.........210.........220.........230......... 240..
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Query Sequence  VDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTS. KVN
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Template Sequence  . . . . . . KATLAWLKAMKTN. . FTAYKGNSTVMKAVNAGQVDSGVIYHYYPFVDGAKTGEN
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SSTSSSTTT
TT
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   156...160........ .170.........180.........190.........200.......
 
   243......250.........260.........270.........280.........290.........300 .
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Query Sequence  YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPL. G
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Template Sequence  SNNIKLYYFKHQDPGAFVSISGGGVLASSKHQQQAQAFIK. WITGKQGQEILRTNNAFEY
Template Known Secondary structure  TTT



TT
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   208.210.........220.........230.........240....... ..250.........260......
 
   302.......310.
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Query Sequence  AVALKSYEEE
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Template Sequence  AVGVGAASNP
Template Known Secondary structure 

BTT



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   267..270......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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