Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.88%DateSun Sep 7 16:46:09 BST 2014
Rank102Aligned Residues282
% Identity12%Templatec3cfxA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:upf0100 protein ma_0280; PDBTitle: crystal structure of m. acetivorans periplasmic binding protein2 moda/wtpa with bound tungstate
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30. ........40.........50.........60... .
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKD. TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW. A
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Template Sequence  VLTVFHAGSLS. VPFEELEAEFEAQHPGVDVQREAAG. SAQSVRKITELGKKADVLASAD
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   42.......50.. .......60.........70....... ..80.........90.........
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  YALIPSLMVPEYADWYAA. . . . . . . FARNQMILAYTNESKYGDEINTDNWYEILRRPDVR
Template Known Secondary structure  TTTTTTT
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TTSTTTTT

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   100.........110....... ..120.........130.........140.........150..
 
   125....130.........140.........150.........160.........170........
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Query Sequence  . . . . . . NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYD
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Template Sequence  YGFSNPNDDPAGYRSQMVTQLAESYYNDDMIYDDLMLANTGMTLTTEENGTALIHVPASE
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TTT
TT
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   153......160.........170.........180.........190.........200.........210..
 
   179180.........190.........200.........210.........220.........230........
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Query Sequence  IKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT
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Template Sequence  EISPNTSKIMLRSMEVELSSALETGEIDY. . LYIYRSVAEQHGFEYVALPPAIDLSSLEY
Template Known Secondary structure  G



TTTSSGGGGTTS
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   213......220.........230.........240. ........250.........260.........270
 
   239240.........250.........260.........270.........280.........290........
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Query Sequence  SKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK
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Template Sequence  ADNYSKV. QVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVA. LLLGETGQQIFIENG
Template Known Secondary structure  TT.
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   271...... ..280.........290.........300.........310... ......320........
 
   299300.
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Query Sequence  PLG
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Template Sequence  QPP
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   329330.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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