Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank56Aligned Residues361
% Identity20%Templatec4g68A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter; PDBTitle: biochemical and structural insights into xylan utilization by the2 thermophilic bacteriumcaldanaerobius polysaccharolyticus
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  GKLVIWIN. . GDKGYNGLAEVGKKFEKDT. GIKVTVE. . HPDKLEEKFPQVAATGDGPDI
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Template Sequence  ITLTFWNLFTGEPAKTKVKEIIDQWNKENPNVQIVESVTENDAYKTKIKAAIAANEAPDI
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STT
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   25....30.........40.........50.........60.........70.........80....
 
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Query Sequence  IFW. AHDRFGGYAQSGLLAEITP. . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLI
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Template Sequence  FQTWAGGFSQPFVEAGKVLQLDSYLNDGTKDQLLPGSFDNVTYNGKIYGIPFDQQASVLY
Template Known Secondary structure  TTTTTTT
B


GGGSSSSGGGGB
TTTTGGGTT

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   85....90.........100.........110.........120.........130.........140....
 
   118.120.... .....130.........140.........150..... ....160.........
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Query Sequence  YNKDLLP. . . . NPPKTWEEIPALDKELKAKGKSALMFNLQEP. . . . YFTWPLIAADGGYA
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Template Sequence  INKELFDKYNVKVPTTFSELIDAIKTFKSKGVTPFALGEKDEWPGXWYYDXIALREGGVQ
Template Known Secondary structure  T




BTT

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   145....150.........160.........170.........180.........190.........200....
 
   170.........180.........190.........200........ .210.........220......
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Query Sequence  FKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . . TDYSIAEAAFNKGETAMT
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Template Sequence  LTRDA. . . LNGKASFDNQAFTDAAQKLQDXVNAGAFDSGFMGLTRDEATAEFNQGKAAXY
Template Known Secondary structure  ...TTSS
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TTGGG

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   205.... 210.........220.........230.........240.........250.........260.
 
   227..230......... 240.........250..... ....260.........270.......
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Query Sequence  INGPWAWSNIDTS. . . . . KVNYGVTVLPTFKGQP. . . . SKPFVGVLSAGINAASPNKELA
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Template Sequence  FGGNFDAAAFVSDPSSLVKGKIEAVRFPTIEGGKGDPTEYIGGTVGALXVSANSKYKDEA
Template Known Secondary structure  GGGTSTT
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   262.......270.........280.........290.........300.........310.........320.
 
   278.280.........290.........300.........310.........320......... 330....
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Query Sequence  KEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGE. . . IMPNI
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Template Sequence  VRAAK. YLAKQLSDMDYLIATGLPAWKYDNIDQSKVDPLEIQIMNNIVANAKGSVPAWDI
Template Known Secondary structure  .TSSSB

TTS
GGGS
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   322.... ...330.........340.........350.........360.........370.........380
 
   335....340.........350.........360.........370
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Query Sequence  PQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAA
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Template Sequence  YLSGDAAQTHKDLVAQLFAKQITPEEYSKQXQQKIN
Template Known Secondary structure  S
TT
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   381........390.........400.........410......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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