Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.38%DateSun Sep 7 16:46:09 BST 2014
Rank113Aligned Residues228
% Identity17%Templatec3fj7A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:major antigenic peptide peb3; PDBTitle: crystal structure of l-phospholactate bound peb3
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30......... 40.........50.........60....
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFWA
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Template Sequence  DVNLYGPGG. PHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAK. . . . . . KDADILFGA
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   21........ 30.........40.........50.........60.... .....70...
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  SDQSALAIASDFGKDFNVSKI. . . . . . . . . . . . . . . . . . . . . KPLYFREAIILTQKGN. P
Template Known Secondary structure  STTGGGS
GGG
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   74.....80.........90.... .....100.........110 .
 
   125....130.........140.........150.........160.........170.........180....
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Query Sequence  NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGV
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Template Sequence  LKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQD. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T


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   112.......120.........130.........140.........150...
 
   185....190.........200.........210.........220.........230.........240....
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Query Sequence  DNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYG
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Template Sequence  . . . . . . . . IKTIQNFRNN. IVAFVPNSGSARKLFAQDQADAWIT. . . WIDWSKSNPDIGT
Template Known Secondary structure  ........T.SSTT

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   154.....160... ......170.........180........ .190.........200.
 
   245....250.........260.........270.........280.........290.........300.
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Query Sequence  VTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  AVAIE. . . . . . . KDLVVYRTFNVIAKEGASKETQDFIA. YLSSKEAKEIFKKYGWRE
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   202.... ...210.........220.........230.. .......240.........250
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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