Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence35.94%DateSun Sep 7 16:46:09 BST 2014
Rank292Aligned Residues152
% Identity17%Templatec4nq8B_
PDB info PDB header:protein transportChain: B: PDB Molecule:putative periplasmic substrate-binding transport protein; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 bordetella bronchispeptica (bb3421), target efi-510039, with density3 modeled as pantoate
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40..... ....50.........60.........
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  SSHYGAGAEAFAKSIEGASGGKYKVQQFANSALGGEREVIEGLQIGTI. DLAIVSTGATL
Template Known Secondary structure  TSTTTS
TTTT
STSS.
STTGG
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   37..40.........50.........60.........70.........80.... .....90.....
 
   70.........80.. .......90.........100.........110.........120.
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Query Sequence  GYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  NFVPETGVFDIPFLLRDLPHARAVLDSKIGQDMLAKFPDRGIIALAWGEQGFRHLTNN. .
Template Known Secondary structure  GT
GGGGGGGSTTTS
SSTTSGGGTS..
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   96...100.........110.........120.........130.........140.........150...
 
   122.......130.........140.........150.........160.........170.........180.
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Query Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  . . VRPVKTPADA. . . . . . . . . . . . KGLKIRTTENPIHITAFRQIGILPTP. . . . . . . . . .
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   154.....160... ......170.........180.........
 
   182.......190....
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Query Sequence  VGVDNAGAKAGLT
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Template Sequence  . . MAWPEVATALQ
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   190.........200
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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