Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence87.48%DateSun Sep 7 16:46:09 BST 2014
Rank141Aligned Residues199
% Identity9%Templatec3n0wA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  DAALAAAQTNAAAKVDILGVDF. . . . . . DNTTMLQMVENIKTFFANQSTNNLFIVTANPE
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Template Sequence  VAAVQLAIEDVGG. . KALGQPVKLVSADYQXKTDVALSIAREWFDRDGVDA. IFDVVNSG
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   48.50.........60 .........70.........80.........90...... ...100....
 
   413......420.........430.........440.........450.........460.........470..
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Query Sequence  IVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHVNH
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Template Sequence  TALAI. . . NNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKG
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   105.... 110.........120.........130.........140.........150.........160.
 
   473 ......480.........490...... ...500... ......510.........520.......
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Query Sequence  Q. KVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKLFKPDYI
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Template Sequence  YKTWFLXLPDAAYGDLXNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKASGAQLI
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   162.......170.........180.........190.........200.........210.........220.
 
   528.530.........540.........550.........560...
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Query Sequence  FVGMGFPKQEEWIMTHENQFESTVMMGVGGSLEVFA
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Template Sequence  VSTSGGAANINIXKQAREFGLPSKTQKVGGXIDILT
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   222.......230.........240.........250.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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