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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank78Aligned Residues318
% Identity18%Templatec4eqbA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:spermidine/putrescine abc superfamily atp binding cassette PDBTitle: 1.5 angstrom crystal structure of spermidine/putrescine abc2 transporter substrate-binding protein potd from streptococcus3 pneumoniae strain canada mdr_19a in complex with calcium and hepes
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
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Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  QKLVIYNWGDYID. . . PELLTQFTEETGIQVQYETFDSNEAMYTKIKQGGTTYDIAIPSE
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TT
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   35....40....... ..50.........60.........70.........80.........90.
 
   66...70.........80.. .......90.........100.........110.........120....
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Query Sequence  DRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  YMINKMKDEDLLVPLDYSKIEGIENIGPEFLNQSFDPGNKFSIPYFWGTLGIVYNETMVD
Template Known Secondary structure  TT
B



GGG


GGGB
GGGSS
TTSGGGSS
GGG
S
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   92.......100.........110.........120.........130.........140.........150.
 
   125....130.........140.........150.........160.........170.........180....
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Query Sequence  NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGV
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Template Sequence  EAPEHWDDL. . . . . . WKLEYKNSIMLFDGAREVLGLGLNSLGYSLNS. . . . . . . . . . . . K
Template Known Secondary structure  S


SGGGG......G
GGGTT
S
TT

TT
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   152.......160 .........170.........180.........190.. .
 
   185....190.........200.........210.........220.........230.........240....
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Query Sequence  DNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYG
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Template Sequence  DPQQLEETVDKLYKLTPNI. . . KAIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLR
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TTGGG...STTTT

S
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   194.....200.........210.. .......220.........230.........240.........250
 
   245....250.........260.........270.........280.........290.........300....
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Query Sequence  VTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVA
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Template Sequence  YVVPT. . . . . . EASNLWFDNMVIPKTVKNQDSAYAFIN. FMLKPENALQNAEYVGYSTPN
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T......T
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BTT
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   251.... ....260.........270.........280.. .......290.........300...
 
   305... .310.........320.........330.........340.........350......
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Query Sequence  LKSY. . . EEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQ
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Template Sequence  LPAKELLPEETKEDKAFYPDVETMKHLEVYEKFD. . HKWTGKYSDLFLQFKMYRK
Template Known Secondary structure  TS
T
TTTS

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   304.....310.........320.........330....... ..340.........350......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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