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Job Descriptionmulti-dom
Confidence21.58%DateSun Sep 7 16:46:09 BST 2014
Rank385Aligned Residues222
% Identity10%Templatec3d02A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   357..360.........370.........380.........390.........400.........410......
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Query Sequence  TVDAALAAAQTNAAAKVDILGVDFDNTTMLQMVENIKTFFANQSTNNLFIVTANPEIVNY
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Template Sequence  RXGEGVVQAGKEFNLNASQVG. . PSSTDAPQQVKIIEDLIARKVDA. . . ITIVPNDANVL
Template Known Secondary structure  TT
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   45....50.........60..... ....70.........80........ .90.........
 
   417..420.........430.........440.........450.........460.........470......
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Query Sequence  ATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHVNHQKVF
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Template Sequence  E. . . PVFKKARDAGIVVLTNESPGQPSANWDVEIIDNEKFAAEYVEHXAKRXGGKGGYVI
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   100 .........110.........120.........130.........140.........150......
 
   477..480....... ..490.........500... ......510... ......520........
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Query Sequence  LLGATNEVVEA. . . . . AQYALQQRYPNISFAH. . HHGYIDLEDE. TVVKRIKLFKPDYIF
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Template Sequence  YVGSLTVPQHNLWADLLVKYQKEHYPDXHEVTRRXPVAESVDDSRRTTLDLXKTYPDLKA
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   157..160.........170.........180.........190.........200.........210......
 
   529530.........540........ .550.........560.. .......570.......
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Query Sequence  VGMGFPKQEEWIMTHENQFE. . . STVMMGVGGSLEVF. . . . . . . . AGAKKRAPYIFRKLN
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Template Sequence  VVSFGSNGPIGAGRAVKEKRAKNKVAVYGXXIPSQAASLIKSGDITEGITYDPATAGYAL
Template Known Secondary structure  SSTTTT
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   217..220.........230.........240.........250.........260.........270......
 
   578.580......
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Query Sequence  IEWIYRALI
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Template Sequence  AAVASTLLN
Template Known Secondary structure  T
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   277..280.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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