Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank76Aligned Residues318
% Identity14%Templatec3ttlB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:polyamine transport protein; PDBTitle: crystal structure of apo-spue
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60......
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHD
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Template Sequence  SLHIYNWTDYIAP. . . TTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNN
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TT
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   28.30.........40 .........50.........60.........70.........80....
 
   67..70.........80.. .......90.........100.........110.........120...
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Query Sequence  RFGGYAQSGLLAEITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL
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Template Sequence  FLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKV
Template Known Secondary structure  TTTT
B



GGG
GGGGGS
TTTSGGG
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   85....90.........100.........110.........120.........130.........140....
 
   124. ....130.........140.........150.........160.........170........
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Query Sequence  PN. . . . . PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYD
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Template Sequence  KEVLGDQPIDSWAILFEPENMKKLAKCG. VAFMDSGDEMLPAALNYLGLDPNT. . . . . . .
Template Known Secondary structure  TT



ST
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   145....150.........160.........170.. .......180.........190......
 
   179180.........190.........200.........210.........220.........230........
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Query Sequence  IKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT
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Template Sequence  . . . . . HDPKDYKKAEEVLTKVRPYV. . . SYFHSSKYISDLANGNICVAFGYSGDVFQAAA
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   197..200.........210...... ...220.........230.........240........
 
   239240.........250.........260.........270.........280.........290........
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Query Sequence  SKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK
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Template Sequence  RAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFID. YLLRPEVIAKVSDYV
Template Known Secondary structure  TS




TT


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   249250.........260.........270.........280.........290.. .......300.......
 
   299300......... 310.........320.........330...... ...340....
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Query Sequence  PLGAVALKSYE. . . EELAKDPRIAATMENAQKGEIMPNIPQ. . . . . MSAFWYAV
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Template Sequence  GYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRI
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B
S
GGGGGGS
TTTTS
TTTS

TT





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   308.310.........320.........330.........340.........350.........360.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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