Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank79Aligned Residues313
% Identity15%Templatec2v84A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum
Resolution1.78 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60......
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHD
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Template Sequence  VLYLYNWTYYTP. . . TSLIKKFEQQYNVQVVYDDYASNEDMFAKLSIGASGYDLVVPSGD
Template Known Secondary structure  TTTS
...T
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SSS

S
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   8.10......... 20.........30.........40.........50.........60....
 
   67..70.........80.. .......90.........100. ........110.........120....
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Query Sequence  RFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRYN. GKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  FVSIMKRKHLLEKIDLSKIPNVQFIKESVRARIAYDPKMEYSVPYYLGAAGIAVNKKAVP
Template Known Secondary structure  TT



GGG
GGGGGB

TTSTT
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TTT

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   65....70.........80.........90.........100.........110.........120....
 
   125....130.........140.........150.........160.........170.........180....
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Query Sequence  NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGV
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Template Sequence  SYARTWSIFSR. . . . . . KDLAYRMSMMDDMREVMGAALASLGYNVNT. . . . . . . . . . . . K
Template Known Secondary structure  S

SSGGGGG
......GGGTTS
S
TT

TT
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   125....130..... ....140.........150.........160..... .
 
   185....190.........200.........210.........220.........230......... 240...
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Query Sequence  DNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTS. KVNY
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Template Sequence  NEQELAQAAILVTDHWKPNLVKF. . DSDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEH
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TGGG..
SSSTS
S
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GGGGGG
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   167..170.........180......... 190.........200.........210.........220....
 
   244.....250.........260.........270.........280.........290.........300...
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Query Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV
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Template Sequence  IDFFIP. . . . QDVASPVYVDSFCIPKGARNRDLAHAFIN. FFLEPAHYAEFLDTFGFPST
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BTT
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   225....230 .........240.........250......... 260.........270.........
 
   304.....310.........320.........330.........340.........
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Query Sequence  ALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVI
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Template Sequence  IHREAAAYQKKTPYY. . SEHDLERGTLKTDVGAAIEHYNAHWNAVR
Template Known Secondary structure  SBTTGGGG

S

SS..
GGGGSSS



GGG
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   280.........290.... .....300.........310.........320...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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