Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank36Aligned Residues366
% Identity100%Templatec1mg1A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
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Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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TTS
TTT





TTTT
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SG
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   6...10.........20.........30.........40.........50.........60.....
 
   66...70.........80.........90.........100.........110.........120.....
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Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
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Template Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
Template Known Secondary structure  GGTT





TTGGGTB
TTTT


TTT
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   66...70.........80.........90.........100.........110.........120.....
 
   126...130.........140.........150.........160.........170.........180.....
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Query Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
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Template Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
Template Known Secondary structure 

SBGGGTTT




SSTT

SSSSS
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   126...130.........140.........150.........160.........170.........180.....
 
   186...190.........200.........210.........220.........230.........240.....
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Query Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV
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Template Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV
Template Known Secondary structure  STTSS
SS

TTS
GGGTT

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   186...190.........200.........210.........220.........230.........240.....
 
   246...250.........260.........270.........280.........290.........300.....
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Query Sequence  TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL
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Template Sequence  TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL
Template Known Secondary structure 


TT


TT
S
TTTSSTTS


SB
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   246...250.........260.........270.........280.........290.........300.....
 
   306...310.........320.........330.........340.........350.........360.....
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Query Sequence  KSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAA
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Template Sequence  KSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAA
Template Known Secondary structure  TTTTSS


STTTSS
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   306...310.........320.........330.........340.........350.........360.....
 
   366...370.
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Query Sequence  QTNAAA
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Template Conservation 
  
 
Template Sequence  QTNAAA
Template Known Secondary structure  TTS
Template Predicted Secondary structure 
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   366...370.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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