Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.97%DateSun Sep 7 16:46:09 BST 2014
Rank94Aligned Residues272
% Identity20%Templated1xvxa_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.53

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30......... 40.........50.........60
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Query Sequence  IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDI
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Template Sequence  SNDSGIVVYNAQH. . ENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVF
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   2.......10.... .....20.........30.........40.........50.........
 
   61........70.........80.........90.........100.........110.........120
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Query Sequence  IFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK
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Template Sequence  LTENSPAMVLVDNAKLFAPLDA. . . . . . . VTQAQVAQEYRPEHGRWTGIAARSTVFVYNP
Template Known Secondary structure  SSSTT
B



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GGGS
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T
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   60.........70.........80. ........90.........100.........110..
 
   121..... ...130.........140.........150.........160.........170........
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Query Sequence  DLLPNP. . PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYD
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Template Sequence  EKISEAELPKSIMDLAK. . . . PEWKGRWAASPSGADFQAIVSAMLELKGE. . . . . . . . . .
Template Known Secondary structure  TTS
GGGS
SSGGGGGS....GGGTTS
TTS
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   113......120......... 130.........140.........150........
 
   179180.........190.........200.........210.........220.........230........
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Query Sequence  IKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT
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Template Sequence  . . . . . . . . . . . KATLEWLKAMKTNFTAYK. . GNSTVMKAVNAGQIDGGVIYHYYRFVDQA
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S..STTSSSTT
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   159160.........170...... ...180.........190.........200.....
 
   239 240.........250.........260.........270.........280.........290.......
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Query Sequence  S. KVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD
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Template Sequence  KTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVK. WITGKSGQDILRTN
Template Known Secondary structure  TT
TTTTT



TT
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   206...210.........220.........230.........240.........250 .........260....
 
   298.300 .........310.
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Query Sequence  KPL. GAVALKSYEEE
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Template Sequence  NAFEYAVGVDAASNP
Template Known Secondary structure  SS

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   265....270.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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