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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank82Aligned Residues318
% Identity17%Templatec4eq7B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter, substrate binding protein (polyamine); PDBTitle: structure of atu4243-gaba receptor
Resolution1.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20... ......30.........40.........50.........60.....
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Query Sequence  KLVIWINGDKGYNGLAE. VGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  DLVFSSWGGTTQDAQKAAWAEKFXVETGINVLQDGPTDYGKLKAXVEANGVTWDVVDVEG
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   24.....30.........40.........50.........60.........70.........80...
 
   66...70.........80.........90.........100.........110.........120.....
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Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
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Template Sequence  DYAAQAGPKGLLEKLDFSVIDKTKLDPR. . . . . . . FVTDYSVGSFYYSFVIGCNVDSVSA
Template Known Secondary structure  TTTT
B



TTTS

TTB
GG.......G
BTTBGGGSSS
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   84.....90.........100.........110. ........120.........130......
 
   126...130.........140.........150.........160.........170.........180.....
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Query Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
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Template Sequence  CPKSWADLFDTAK. . . FPGKRTFYKWSAPGVIE. AALLADGVTADK. . . . . . . . . . . . LY
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ST
TTT...S
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SSSTT.TT

GGG............
S
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   137..140......... 150.........160...... ...170........ .180
 
   186...190.........200.........210.........220.........230.........240.....
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Query Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV
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Template Sequence  PLDLDRAFKKLDTIKSDIIWWS. . GGAQSQQLIASAEAPFGSVWNGRXTALEQSGVKVET
Template Known Secondary structure  S

TTGGG
..STTSS
TT

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   181........190.........200.. .......210.........220.........230........
 
   246...250.........260.........270.........280.........290.........300.....
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Query Sequence  TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL
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Template Sequence  SWAQ. . . . . . . . NITAADSLVVPKGTKNKDAAXKFIA. LATSAQAQADXATATGYAPVNI
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BTT
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.TSS
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SBT
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   239240.. .......250.........260....... ..270.........280.........
 
   306...310.........320.........330.........340.........350.........360.....
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Query Sequence  KSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAA
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Template Sequence  ESAKL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XDPKIAKSL
Template Known Secondary structure  TSGGG..............................................S
TTS
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   290.... .....300...
 
   366...370.........380.........390.........400....
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Query Sequence  QTNAAAKVDILGVDFDNTTMLQMVENIKTFFANQSTNNL
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Template Conservation             
              
    
       
Template Sequence  PDQQTESQVNADXNYWAQHRDEIGERWYAWQAKHHHHHH
Template Known Secondary structure  GGG

S



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   304.....310.........320.........330.........340..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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