Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence38.88%DateSun Sep 7 16:46:09 BST 2014
Rank275Aligned Residues115
% Identity14%Templatec4n8yA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:putative trap-type c4-dicarboxylate transport system, PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 bradyrhizobium sp. btai1 b (bbta_0128), target efi-5100563 (bbta_0128), complex with alpha/beta-d-galacturonate
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40..... ....50.........60.........
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  DYPTVEAVKFMGKQLAAASGGKLGVKVFPNGALGSEKDTIEQLKIGAL. DMMRINSSPLN
Template Known Secondary structure  TSTTTS

TTTT

TS
.SSGGGT
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   34.....40.........50.........60.........70.........80. ........90..
 
   70.........80 .. .......90.........100.........110.........120.
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Query Sequence  GYAQSGLLAEI. . . . . TP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  NFVPETVALCLPFVFRDTQHMRNVLDGPIGDEILAAMEPAGLVGLAYYDSGARSIYTV. .
Template Known Secondary structure  TT
GGGSTT
SSSSTTGGGT



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   93......100.........110.........120.........130.........140.........150
 
   122.......130...
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Query Sequence  LLPNPPKTWEEI
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Template Sequence  . . KAPVKSLADL
Template Known Secondary structure  ..SS


SGGGG
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   151........160
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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