Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence57.23%DateSun Sep 7 16:46:09 BST 2014
Rank214Aligned Residues127
% Identity13%Templatec4pakA_
PDB info PDB header:solute-binding proteinChain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a3 nephridial symbiont of the earthworm eisenia foetida, bound to (r)-4 pantoic acid
Resolution1.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KIEEGKLVI. . . WINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAAT
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Template Sequence  XAAQTTXRINISTAQNSHQGVAIDTFAKEVEKRTGGRYKVQTFYNAALGAERESVEAVQL
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Query Sequence  GDGPDIIFWAHDRFGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIA
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Template Sequence  GTH. ELTFSSSGPIPNFVPETKILDVPFLFRDKAHARAVLDGPIGQELLTRFDGKGFKAL
Template Known Secondary structure  TSS.SSTTGGGT
GGGGGGGSTT

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Query Sequence  YPIAVEALSLIYNKDLLPNPPKTWEEI
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Template Sequence  AWAENGFRHXSNSK. . . . RAVKEPGDL
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Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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