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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank32Aligned Residues367
% Identity104%Templatec3osrA_
PDB info PDB header:fluorescent protein, transport proteinChain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.
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Query Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
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Template Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
Template Known Secondary structure 
S
TT

TTS
S


TTTT
S
S
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   1........10.........20.........30.........40.........50.........60
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
Template Known Secondary structure  GGGTT
B





TTB
TTT
S

TT
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   61........70.........80.........90.........100.........110.........120
 
   122.......130.........140.........150.........160.........170.........180.
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Query Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
Template Known Secondary structure  T
SS

SBSTTTTT




SSTT
TT
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   121........130.........140.........150.........160.........170.........180
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
Template Known Secondary structure  SSSTTSS
TT

TTS
GGGT
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   181........190.........200.........210.........220.........230.........240
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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BBTTB



BTT
S
TTSSS


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   241........250.........260.........270.........280.........290.........300
 
   302.......310....
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Query Sequence  AVALKSYEEELAK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AVALKSYEEELGGSHNVYIMADKQRNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPV
Template Known Secondary structure  SB
S
SGGGTBTTS
SSSS

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   301........310.........320.........330.........340.........350.........360
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITKGEELFTGVVPILVELDGDVNGH
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S

TT

SS



GGGGGSS
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   361........370.........380.........390.........400.........410.........420
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLVQCFSRYPDHMKQHDFFKSAM
Template Known Secondary structure  GGGTTTSS
SS
GGGGTTT

GGGSB

GGGGGG
TT
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   438.440.........450.........460.........470.........480.........490.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNNP
Template Known Secondary structure  TT
TTS
TTS

TTSTTTTT
B
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   501........510.........520.........530.........540.........550.........560
 
   315....320.........330.........340.........350.........360........
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Query Sequence  . . DPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTN
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Template Conservation                                                          
Template Sequence  AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEDLKDAQTR
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TTTSS
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   561........570.........580.........590.........600.........610......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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