Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank30Aligned Residues367
% Identity98%Templatec1y4cA_
PDB info PDB header:de novo proteinChain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60....
Predicted Secondary structure 


















Query SS confidence 



























































Query Sequence  EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWA
Query Conservation   
 
 

         
      


  



     

   

  
  

  


    
Alig confidence 



























































Template Conservation   
 
  
                


 


 
          

     

  


    
Template Sequence  EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWA
Template Known Secondary structure 



TTS




TTTTT
S
S
Template Predicted Secondary structure 


















Template SS confidence 



























































   4.....10.........20.........30.........40.........50.........60...
 
   65....70.........80.........90.........100.........110.........120....
Predicted Secondary structure 













Query SS confidence 



























































Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
Query Conservation            
 
 

       
            


 



       
 





 
Alig confidence 



























































Template Conservation            
 
  
                    


 
 

       
 





 
Template Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
Template Known Secondary structure  GGGTT
B





TTB
TTT
S

TTT
S
Template Predicted Secondary structure 




















Template SS confidence 



























































   64.....70.........80.........90.........100.........110.........120...
 
   125....130.........140.........150.........160.........170.........180....
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGV
Query Conservation 


 




   




  
                 
   

       
  
     
Alig confidence 



























































Template Conservation    
 




   
  
                         

                
Template Sequence  NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGV
Template Known Secondary structure  S

SBGGGTTT



SSSTT
TTT
Template Predicted Secondary structure 





























Template SS confidence 



























































   124.....130.........140.........150.........160.........170.........180...
 
   185....190.........200.........210.........220.........230.........240....
Predicted Secondary structure 




















Query SS confidence 



























































Query Sequence  DNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYG
Query Conservation   

   


     
   
              
  

 

 
 
 
            
Alig confidence 



























































Template Conservation   
     

     
   
              
  
  
  
 
 
             
Template Sequence  DNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYG
Template Known Secondary structure  TSTTSS
TT

TT

GGGTT

Template Predicted Secondary structure 





















Template SS confidence 



























































   184.....190.........200.........210.........220.........230.........240...
 
   245....250.........260.........270.........280.........290.........300....
Predicted Secondary structure 

























Query SS confidence 



























































Query Sequence  VTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVA
Query Conservation 

 

   
       
     
 
 






  

   
 
 
            
  
Alig confidence 



























































Template Conservation 
   
   
       
     
   






  

       
               
Template Sequence  VTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVA
Template Known Secondary structure 


BBTTB



BTT
S
TTSSS


S
Template Predicted Secondary structure 
























Template SS confidence 



























































   244.....250.........260.........270.........280.........290.........300...
 
   305....310.........320.........330.........340.........350.........360....
Predicted Secondary structure 





















Query SS confidence 



























































Query Sequence  LKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAA
Query Conservation    
       

      
    
   
 

    
   
  

  
  
  
 



  
Alig confidence 



























































Template Conservation             
               
  
            
  
  
      

  
Template Sequence  LKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKD
Template Known Secondary structure  BTT
S


STTTSS
Template Predicted Secondary structure 














Template SS confidence 



























































   304.....310.........320.........330.........340.........350.........360...
 
   365....370.
Predicted Secondary structure 



Query SS confidence 






Query Sequence  AQTNAAA
Query Conservation 

  
 
Alig confidence 






Template Conservation         
Template Sequence  AQTNSSS
Template Known Secondary structure 

Template Predicted Secondary structure 
Template SS confidence 






   364.....370
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D