Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence21.44%DateSun Sep 7 16:46:09 BST 2014
Rank387Aligned Residues204
% Identity10%Templatec3h6hB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   359360.........370...... ...380 .........390.........400.........410
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Query Sequence  DAALAAAQTNAAAKVDIL. GVDF. . . . . . . DNTTMLQMVENIKTFFANQSTNNLFIVTAN
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Template Sequence  ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAA. . . IFGPS
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   23......30.........40.........50.........60.........70.... .....
 
   411........420.........430.. .......440.........450.........460.........
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Query Sequence  PEIVNYATTHQAYLELINQASY. IVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAH
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Template Sequence  HSSSANA. . . . . VQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQ
Template Known Secondary structure  S.....TT

B
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   80...... ...90.........100.........110.........120.........130....
 
   470.........480.........490...... ...500.........510.. .......520......
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Query Sequence  VNHQKVFLLGATNEVVEAAQYALQQRY. . PNISFAHHHGYIDLED. ETVVKRIKLFKPDY
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Template Sequence  FFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFH
Template Known Secondary structure  TT
SSSTSTGGGTSS


SSGGG
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   135....140.........150.........160.........170.........180.........190....
 
   527..530.........540..... ....550.........560.........570
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Query Sequence  IFVGMGFPKQEEWIMTHEN. QFESTVMMGVGGSLEVFAGAKKRAP
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Template Sequence  VIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYR
Template Known Secondary structure  S
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   195....200.........210.........220.........230.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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