Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence88.85%DateSun Sep 7 16:46:09 BST 2014
Rank138Aligned Residues235
% Identity12%Templatec4gotA_
PDB info PDB header:lipid binding proteinChain: A: PDB Molecule:methionine-binding lipoprotein metq; PDBTitle: crystal structure of a putative methionine-binding lipoprotein2 (bsu32730) from bacillus subtilis subsp. subtilis str. 168 at 1.95 a3 resolution
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60....
Predicted Secondary structure 


















Query SS confidence 



























































Query Sequence  EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWA
Query Conservation   
 
 

         
      


  



     

   

  
  

  


    
Alig confidence 


























.












.










.





Template Conservation   
 
 

        

      


 .

 

      
 .    

 

 
.

    
Template Sequence  KKEIVVAATKTPHAEILKEAEPLLKEK. GYTLKVKVLSDYK. XYNKALADKEV. DANYFQ
Template Known Secondary structure  TT
TTTTT.T


SST.TTS
.S
Template Predicted Secondary structure 





.





.


.
Template SS confidence 



























































   30.........40.........50...... ...60......... 70.........80 ......
 
   65....70.........80.........90.........100.........110.........120....
Predicted Secondary structure 













Query SS confidence 



























































Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
Query Conservation            
 
 

       
            


 



       
 





 
Alig confidence 











.......................























.
Template Conservation              .......................    
                   .
Template Sequence  HIPYLEQEXKEN. . . . . . . . . . . . . . . . . . . . . . . TDYKLVNAGAVHLEPFGIYSKTYK.
Template Known Secondary structure 
.......................TT





SS
S.
Template Predicted Secondary structure 



.......................














.
Template SS confidence 



























































   87..90........ .100.........110.........120..
 
   125....130.........140.........150.........160.........170.........180....
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGV
Query Conservation 


 




   




  
                 
   

       
  
     
Alig confidence  ....




.......











































Template Conservation  ....   

.......   
 
               
   

                 
Template Sequence  . . . . SLKDL. . . . . . . PDGATIILTNNVAEQGRXLAXLENAGLITLDSKVETVDATLKDI
Template Known Secondary structure  ....SGGG
.......
TT


GGGTTS

TTS
GGG

GGG
Template Predicted Secondary structure  ....
.......

























Template SS confidence 



























































   123.... ..130.........140.........150.........160.........170.
 
   185....190.........200.........210.........220.........230.........240....
Predicted Secondary structure 




















Query SS confidence 



























































Query Sequence  DNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYG
Query Conservation   

   


     
   
              
  

 

 
 
 
            
Alig confidence 



.............










































Template Conservation      .............  
 

         

  
 


     
    
        
Template Sequence  KKNP. . . . . . . . . . . . . KNLEFKKVAPELTAKAYENKEGDAVFINVNYAIQNKLNPKKDA
Template Known Secondary structure 
T.............T


TTTTT
SS
TT


Template Predicted Secondary structure 



.............















Template SS confidence 



























































   172... ....180.........190.........200.........210........
 
   245....250.........260.........270.........280.........290.......
Predicted Secondary structure 


















Query SS confidence 




















































Query Sequence  VTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD
Query Conservation 

 

   
       
     
 
 






  

   
 
 
        
Alig confidence 


......




























.













Template Conservation     ......                   
    
 
  .
    
    
   
Template Sequence  IEV. . . . . . ESTKNNPYANIIAVRKGEEDSAKIKALXE. VLHSKKIKDFIEKK
Template Known Secondary structure  S......

STT



TT
TTS.TS
Template Predicted Secondary structure  ......










.

Template SS confidence 




















































   219220. ........230.........240.........250 .........260....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D