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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank44Aligned Residues365
% Identity33%Templatec2fncA_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose.
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30......... 40.........50.........60....
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFWA
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Template Sequence  KLTIWCS. EKQVDILQKLGEEFKAKYGIPVEVQYVDFGSIKSKFLTAAPQGQGADIIVGA
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.S



GGGT
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   6...10.. .......20.........30.........40.........50.........60....
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  HDWVGELAVNGLIEPIPNFS. DLKNFYDTALKAFSYGGKLYGVPYAMEAVALIYNKDYVD
Template Known Secondary structure  GGGTT
B





G.GGGGB
TTT



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   65....70.........80.... .....90.........100.........110.........120...
 
   125....130.........140...... ...150.........160.........170.........180.
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Query Sequence  NPPKTWEEIPALDKELKAKGKS. . . ALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  SVPKTMDELIEKAKQIDEEYGGEVRGFIYDVANFYFSAPFILGYGGYVFKETPQGLDVTD
Template Known Secondary structure  S

SBTTTSS

TT
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   124.....130.........140.........150.........160.........170.........180...
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  IGLANEGAVKGAKLIKRMIDEGVLTPGDNYGTMDSMFKEGLAAMIINGLWAIKSYKDAGI
Template Known Secondary structure  TTSTTSS
TT

TT

GGGTT
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   184.....190.........200.........210.........220.........230.........240...
 
   242.......250... ......260.........270.........280.........290.........300
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Query Sequence  NYGVTVLPTFKG. QPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPL
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Template Sequence  NYGVAPIPELEPGVPAKPFVGVQGFMINAKSPNKVIAMEFLTNFIARKETMYKIYLADPR
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BSBTTB



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   244.....250.........260.........270.........280.........290.........300...
 
   301........310.........320.........330.........340.........350.........360
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Query Sequence  GAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDA
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Template Sequence  LPARKDVL. ELVKDNPDVVAFTQSASMGTPMPNVPEMAPVWSAMGDALSIIINGQASVED
Template Known Secondary structure  SB.TT
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SGGGTTTTSS
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   304.....310. ........320.........330.........340.........350.........360..
 
   361........370....
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Query Sequence  ALAAAQTNAAAKVD
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Template Sequence  ALKEAVEKIKAQIE
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   363......370......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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