Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank48Aligned Residues368
% Identity24%Templated1eu8a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10........ .20.........30. ........ 40....... ..50.....
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Query Sequence  IEEGKLVIWINGDKGY. NGLAEVGKKFEKD. TGIKVTVE. . HPDKLEEK. . . FPQVAATG
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Template Sequence  IEEGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKS
Template Known Secondary structure 

SS

SSTT


SSTTT
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   2.......10.........20.........30.........40.........50.........60.
 
   56...60.........70.........80.. .......90.........100.........110
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Query Sequence  DGPDIIFWAHDRFGGYAQSGLLAEITP. . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIA
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Template Sequence  SDPDVFLMDVAWLGQFIASGWLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVY
Template Known Secondary structure  SSTTTT
B

ST

GGGB
TTT

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   62.......70.........80.........90.........100.........110.........120.
 
   111........120.... .....130.........140.... .....150.....
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Query Sequence  VEALSLIYNKDLLP. . . . . NPPKTWEEIPALDKELKAKG. . . . . . KSALMFNLQEP. . . .
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Template Sequence  IDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERETNPNFWGFVWQGKQYEGLV
Template Known Secondary structure 
TT

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SBTTT
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   122.......130.........140.........150.........160.........170.........180.
 
   156...160.........170.........180.........190.........200........ .210
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Query Sequence  YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . . . . TD
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Template Sequence  CDFVEYVYSNGGSLGEFKDGKW. . . VPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMT
Template Known Secondary structure  TTT

STT...
TT
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   182.......190.........200... ......210.........220.........230........
 
   211........220.........230......... 240.........250.........260......
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Query Sequence  YSIAEAAFNKGETAMTINGPWAWSNIDTS. . . . KVNYGVTVLPTFKGQPSKPFVGVLSAG
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Template Sequence  EEPVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIG
Template Known Secondary structure  TT

TTSTT
TTTT



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   239240.........250.........260.........270.........280.........290........
 
   267..270.........280.........290.........300.........310 .........320....
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Query Sequence  INAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEE. . ELAKDPRIAATMEN
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Template Sequence  ISKYSDNKALAWEFVK. FVESYSVQKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAV
Template Known Secondary structure  BTT
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.TST


BSBTTGGGS
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   299300.........310.... .....320.........330.........340.........350.......
 
   325....330.........340.........350.........360.........370....
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Query Sequence  AQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAKVD
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Template Conservation                               
      
           
 
Template Sequence  FENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKEAEELVK
Template Known Secondary structure  T
B




TTTSS
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   358.360.........370.........380.........390.........400.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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