Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence64.94%DateSun Sep 7 16:46:09 BST 2014
Rank187Aligned Residues120
% Identity17%Templatec4p1lA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 chromohalobacter salexigens dsm 3043 (csal_2479), target efi-510085,3 with bound d-glucuronate, spg i213
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30... ......40..... ....50.........60....
Predicted Secondary structure 







..


..






Query SS confidence 
























. .











. .


















Query Sequence  VIWINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWA
Query Conservation   

         
      


  
..


     

  .. 

  
  

  


    
Alig confidence 
























..











..











.





Template Conservation     
           

  
 
 
 
 
 
 
   
 

   
    
  
 
.
     
Template Sequence  NIHPPSYPNGKALESFAKEVAEKTEGRVEPKVYHNAVLGDQPDAIEQTRSGAL. DFANFN
Template Known Secondary structure 
SS
TTSTTTSS

TTTT

TTSS.
Template Predicted Secondary structure 



















.
Template SS confidence 



























































   40.........50.........60.........70.........80.........90.. ......
 
   65....70.........80.. .......90.........100.........110......
Predicted Secondary structure 








........




Query SS confidence 

















. . . . . . . .

































Query Sequence  HDRFGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSL
Query Conservation            
 
 

  ........     
            


 



       
Alig confidence 

















........

































Template Conservation          
      

                            
   
          
Template Sequence  XGPXGPIVPAANVLSLPFIFKSPDDXYRIXDGEIGERFADALAEKNLIVLSWFGSGARSL
Template Known Secondary structure  STTTTTTSGGGGGGGSTT
SS
TSTT



Template Predicted Secondary structure 
























Template SS confidence 



























































   99100.........110.........120.........130.........140.........150........
 
   117..120.........130...
Predicted Secondary structure 




Query SS confidence 
















Query Sequence  IYNKDLLPNPPKTWEEI
Query Conservation   





 


 




Alig confidence 



....








Template Conservation      .... 

 
  

Template Sequence  YNTD. . . . HPVETPDDV
Template Known Secondary structure  SS....



SGGGG
Template Predicted Secondary structure 

....




Template SS confidence 
















   159160.. .......170.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D