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Job Descriptionmulti-dom
Confidence99.96%DateSun Sep 7 16:46:09 BST 2014
Rank99Aligned Residues272
% Identity15%Templatec2qryD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10..... ....20.........30.........40 .........50.........60.
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Query Sequence  KLVIWINGD. . KGYNGLAEVGKKFEKDTGIKVTVEH. . . PDKLEEKFPQVAATGDGPDII
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Template Sequence  VLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRXEGKNSKADVVL
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STTSSSS
S
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S
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   21........30.........40.........50.........60.........70.........80
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  GLDNNLLDAASKTGLFAKSGV. . . . . . . . AADAVNVPGGWNNDTFVPFDYGYFAFVYDKN
Template Known Secondary structure  GGGTTT
B




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   81........90.........100. ........110.........120.........130..
 
   122.......130.........140.........150.........160.........170.........180.
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Query Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  KLKNPPQSLKELVES. . . . DQNWRVIYQDPRTSTPGLGLLLWXQ. . . . . . . . . . . . . . . .
Template Known Secondary structure  T
SS

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   133......140....... ..150.........160.........170..
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  . . . . KVYGDDAPQAWQKLA. KKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEK
Template Known Secondary structure  ....GGG.TTSSTTS
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   173......180....... ..190.........200.........210.........220.......
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  KDNYAAANFSEG. . . . HYLQVEVAARTAASKQPELAQKFLQ. FXVSPAFQNAIPTGNWXY
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   228.230......... 240.........250.........260.... .....270.........280..
 
   302.......310......
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Query Sequence  AVALKSYEEELAKDP
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Template Conservation 
              
Template Sequence  PVANVTLPAGFEKLT
Template Known Secondary structure  SS




TTGGGS
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   283......290.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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