Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence66.37%DateSun Sep 7 16:46:09 BST 2014
Rank182Aligned Residues196
% Identity9%Templatec4gnrA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter substrate-binding protein-branched chain PDBTitle: 1.0 angstrom resolution crystal structure of the branched-chain amino2 acid transporter substrate binding protein livj from streptococcus3 pneumoniae str. canada mdr_19a in complex with isoleucine
Resolution1.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380 .........390.........400.........410.
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Query Sequence  VDAALAAAQTNAAAKVDILGVDF. . . . . . DNTTMLQMVENIKTFFANQSTNNLFIVTANP
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Template Sequence  EQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATSG
Template Known Secondary structure  TT
BTTB
TT
TS

S


S
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   60.........70.........80.........90.........100.........110.........
 
   412.......420.........430. ........440.........450.........460.........470
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Query Sequence  EIVNYATTHQAYLELINQAS. YIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHV
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Template Sequence  AT. . . . . . . AAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQDSFQGKIISNYVSE
Template Known Secondary structure  .......TT

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TTTTTT
TT
S

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   120. ........130.........140.........150.........160.........170..
 
   471.. ......480.........490.........500... ......510.........520......
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Query Sequence  NHQ. . KVFLLGATNEVVEAAQYALQQRYPNISFAH. . HHGYIDLEDETVVKRIKLFKPDY
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Template Sequence  KLNAKKVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKDFDA
Template Known Secondary structure  TS

STT


S
TT



TS

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   173......180.........190.........200.........210.........220.........230..
 
   527..530.........540.........550.........560
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Query Sequence  IFVGMGFPKQEEWIMTHENQFESTVMMGVGGSLE
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Template Sequence  IVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNG
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S
TT

S

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S
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   233......240.........250.........260......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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