Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence53.92%DateSun Sep 7 16:46:09 BST 2014
Rank222Aligned Residues125
% Identity13%Templatec4mncA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:trap dicarboxylate transporter-dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 polaromonas sp. js666 (bpro_4736), target efi-510156, with bound3 benzoyl formate, space group p21
Resolution1.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10....... ..20.........30... ......40.... .....50......
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Query Sequence  EEGKLVIWINGDKG. . . YNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGD
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Template Sequence  QEVTLRLVSAFPENGIYVQRLLPWIAKVNAEGKGVLQINFLGGPKAIPTFEAGNAVKTGV
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   28.30.........40.........50.........60.........70.........80.......
 
   57..60.........70.........80.. .......90.........100.........110...
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Query Sequence  GPDIIFWAHDRFGGYAQSGLLAEITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA
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Template Sequence  V. DMAMNTGAFYTNVMPEADFLKLTQIPVAEQRKNGAFDAINKVWNEKGNTQYLARMVEN
Template Known Secondary structure  S.S
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   88 .90.........100.........110.........120.........130.........140......
 
   114.....120.........130...
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Query Sequence  LSLIYNKDLLPNPPKTWEEI
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Template Sequence  QPFHIYT. . . . NKKIDKPDL
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   147..150... ......160..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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