Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank27Aligned Residues368
% Identity101%Templatec3osqA_
PDB info PDB header:fluorescent protein, transport proteinChain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60..
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Query Sequence  IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIF
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Template Sequence  IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIF
Template Known Secondary structure 

TTS

TTS





TTTT
S
S
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   2.......10.........20.........30.........40.........50.........60.
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  WAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL
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Template Sequence  WAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL
Template Known Secondary structure  GGGTT
B





TTB
TTT
S

TTT
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   62.......70.........80.........90.........100.........110.........120.
 
   123......130.........140.........150.........160.........170....
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Query Sequence  LPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYEN. . . . . . . .
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Template Sequence  LPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENHLSHNVYI
Template Known Secondary structure 
SS

SBSTTTTT




SSTT

S


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   122.......130.........140.........150.........160.........170.........180.
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  MADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPN
Template Known Secondary structure  GGGTBTTS
SSSS





S

TT
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   182.......190.........200.........210.........220.........230.........240.
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  EKRDHMVLLEFVTAAGITLGMDELYKGVSKGEELFTGVVPILVELDGDVNGHKFSVSGEG
Template Known Secondary structure 

SS




TT


TGGGGGSSTT
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   242.......250.........260.........270.........280.........290.........300.
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  EGDATYGKLTLKFICTTGKLPVPWPTLVTTLVQCFSRYPDHMKQHDFFKSAMPEGYIQER
Template Known Secondary structure  TTTTTTSS
SS
GGGGTTT

GGG
B

GGGGGG
TTTT
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   308.310.........320.........330.........340.........350.........360.......
 
   175....180...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GKYDIKDVG
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Template Sequence  TIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNGGKYDIKDVG
Template Known Secondary structure  TTS
TTS

TTSTTTTT
B
SSSTTTT
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   371........380.........390.........400.........410.........420.........430
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  VDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNY
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Template Sequence  VDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNY
Template Known Secondary structure  SSSTTSS
TT

TTS
GGGT

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   431........440.........450.........460.........470.........480.........490
 
   244.....250.........260.........270.........280.........290.........300...
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Query Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV
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Template Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV
Template Known Secondary structure 


BBTTB



BTT
S
TTSSS


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   491........500.........510.........520.........530.........540.........550
 
   304.....310.........320.........330.........340.........350.........360...
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Query Sequence  ALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALA
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Template Sequence  ALKSYEEELVKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEDLK
Template Known Secondary structure  SBTTSS



TTTTSS
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   551........560.........570.........580.........590.........600.........610
 
   364.....370
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Query Sequence  AAQTNAA
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Template Sequence  DAQTRIT
Template Known Secondary structure 
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   611......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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