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Job Descriptionmulti-dom
Confidence95.73%DateSun Sep 7 16:46:09 BST 2014
Rank127Aligned Residues233
% Identity15%Templatec4ntlA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:lipoprotein, yaec family; PDBTitle: crystal structure of a lipoprotein, yaec family (ef3198) from2 enterococcus faecalis v583 at 1.80 a resolution
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60....
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Query Sequence  EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWA
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Template Sequence  DKEITVAVQLESSKDILEIAKKEAEKK. GYKINIXEVSD. NVAYNDAVQHDEA. DANFAQ
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   31........40.........50....... ..60........ .70.........80. ......
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  HQPFXEXFNKEKKADL. . . . . . . . . . . . . . . . . . . . . . . VAVQPIYYFAGGF. . . . . . YS
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   88.90.........100... ......110...... ..
 
   125....130.........140.........150.........160.........170.........180....
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Query Sequence  NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGV
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Template Sequence  KEYQDAKDL. . . . . . . . PENAKVGIPSDPTNEGRALAILNANGVIKLKEGVGFNGTVADV
Template Known Secondary structure  SS
SSGGG
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   119120....... ..130.........140.........150.........160.........170
 
   185....190.........200.........210.........220.........230.........240....
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Query Sequence  DNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYG
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Template Sequence  VEN. . . . . . . . . . . . . PKNITFESIDLLNLAKAYDEKDIAXVFCYPAYLEPAGLTTKDAI
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GGGTT
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   171.. ......180.........190.........200.........210.......
 
   245....250.........260.........270.........280.........290.......
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Query Sequence  VTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD
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Template Sequence  LLEDK. . . . . . EASKHYALQVVTRKGEKDSEKIKVLKE. AXTTKEVAEYIKKN
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   218.220.. .......230.........240......... 250.........260...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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