Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank28Aligned Residues371
% Identity98%Templatec2vgqA_
PDB info PDB header:immune system/transportChain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card
Resolution2.1 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60..
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Query Sequence  IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIF
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Template Sequence  IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIF
Template Known Secondary structure 

TTS

TTS
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TTTTT
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S
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   2.......10.........20.........30.........40.........50.........60.
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  WAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL
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Template Sequence  WAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL
Template Known Secondary structure  GGGTT
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TTB
TTT
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TTT
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   62.......70.........80.........90.........100.........110.........120.
 
   123......130.........140.........150.........160.........170.........180..
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Query Sequence  LPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDV
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Template Sequence  LPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDV
Template Known Secondary structure 
SS

SBGGGTT




SSTT
TT
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   122.......130.........140.........150.........160.........170.........180.
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  GVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN
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Template Sequence  GVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN
Template Known Secondary structure  TTSTTSS
TT

TTS
GGGT

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   182.......190.........200.........210.........220.........230.........240.
 
   243......250.........260.........270.........280.........290.........300..
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Query Sequence  YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGA
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Template Sequence  YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGA
Template Known Secondary structure 


BBTTB



BTT
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TTSSS


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   242.......250.........260.........270.........280.........290.........300.
 
   303......310.........320.........330.........340.........350.........360..
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Query Sequence  VALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAAL
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Template Sequence  VALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEAL
Template Known Secondary structure  SBTTSS


STTTSS
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   302.......310.........320.........330.........340.........350.........360.
 
   363......370...
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Query Sequence  AAAQTNAAAKV
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Template Sequence  KDAQTNSAMAF
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   362.......370..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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