Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank74Aligned Residues369
% Identity17%Templated1y3na1
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.. .......20.........30......... 40.........50.......
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Query Sequence  IEEGKLVIWI. . NGDKGYNGLAEVGKKFEKDTGIKVTVE. . . HPDKLEEKFPQVAATGDG
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Template Sequence  EKPLTLKIHMHFRDKWVWDENWPVAREVARLTNVKLVGVANRAATNSQEQFNLMMASGQL
Template Known Secondary structure  SS
TTT

TTSS
S
SS
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   8.10.........20.........30.........40.........50.........60.......
 
   58.60.... .....70.........80..... ....90.........100.......
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Query Sequence  PDIIFWA. . HDRFGGYAQSGLLAEITPDKA. . . . . . . . FQDKLYPFTWDAVRYNGKLIAY
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Template Sequence  PDIVGGDNLKDKFIRYGMEGAFIPLNKLIDQNAPNLKAFFKTHPEVQRAITAPDGNIYYL
Template Known Secondary structure 
STT
TTSB




B
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   68.70.........80.........90.........100.........110.........120.......
 
   108.110.... .....120...... ...130.........140..... ....150....
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Query Sequence  PIAVEAL. . . SLIYNKDLLPNP. . . . PKTWEEIPALDKELKAKGK. . . . . . SALMFNLQE
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Template Sequence  PYVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRD
Template Known Secondary structure 


S

TT




BS
TT
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S
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   128.130.........140.........150.........160.........170.........180.......
 
   155....160.........170.........180 .........190.........200........
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Query Sequence  PYFTWPLIAADGGYAFKYENGKYDIK. . . . . DVGVDNAGAKAGLTFLVDLIKNKHMNAD.
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Template Sequence  PEEVFRLVNFWGARSTGSNTWMDFYVENGKIKHPFAEVAFKDGIKHVAQWYKEGLIDPEI
Template Known Secondary structure  TGGGGGT

S
SSSSTT

TT
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   188.190.........200.........210.........220.........230.........240.......
 
   209210.........220.........230......... 240.........250......
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Query Sequence  . . TDYSIAEAAFNKGETAMTINGPWAWSNIDTS. . . . . . KVNYGVTVLPTFKGQPS. . . .
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Template Sequence  FTRKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINSKGQRWEED
Template Known Secondary structure  TTSGGGTTTT
STTTSTT




B
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   248.250.........260.........270.........280.........290.........300.......
 
   257..260.........270.........280.........290....
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Query Sequence  . KPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAV. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ARQIPRPDGWAITATNKNPVETIKLFD. FYFGPKGRELSNFGVPGLTYDIKNGKPVYKDT
Template Known Secondary structure 


SS
S
BTT
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   308.310.........320.........330.... .....340.........350.........360......
 
   295....300.........310.........320.........330......
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Query Sequence  . . . . . . . . . . . . . . . NKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQ. . .
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Template Conservation                                                              
Template Sequence  VLKAAQPVNNQMYDIGAQIPIGFWQDYEYERQWTNDVALQGIDMYIKNKYVLPQFTGVNL
Template Known Secondary structure  T
SS
TTT
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TT

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   367..370.........380.........390.........400.........410.........420......
 
   337..340.........350.........360.........370..
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Query Sequence  . . . . . . . . . . . MSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAK
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Template Conservation                
           
 
  
            
  
Template Sequence  TVEEREIYDKYWPDVKTYMFEMGQSWVMGTKDPEKTWNDYQQQLKNR
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TSS
T
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   427..430.........440.........450.........460.........470...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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