Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank64Aligned Residues365
% Identity16%Templatec4r2bB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:extracellular solute-binding protein family 1; PDBTitle: crystal structure of sugar transporter oant_3817 from ochrobactrum2 anthropi, target efi-510558, with bound glucose
Resolution1.87 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  EEGKLVIWINGDKGYNG. . LAEVGKKFEK. DTGIKVTVEH. . . PDKLEEKFPQVAATGDG
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Template Sequence  DKQNVEVLHWWTAGGEAAALDVLKKDLEKKGISWTDMPVAGGGGTEAMTVLRARVTAGNA
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GGGTT

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Query Sequence  PDIIFWAHDRFGGYAQSGLLAEITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEAL
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Template Sequence  PTAVQMLGFDIRDWAEQGALGNLDEIANKEGWEKVIPAPLQEFAKYDGHWIAAPVNVHST
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Query Sequence  . SLIYNKDLLP. . . . NPPKTWEEIPALDKELKAKGKSALMFNLQEP. . . YFTWPLIAADG
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Template Sequence  NWMWINKAALDKAGGKEPTNWDELIALLDKFKEQGITPIAHGGQPWQDATIFDAVVLSFG
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   149150.........160.........170.........180.........190.........200........
 
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Query Sequence  GYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADT. DYSIAEAAFNKGETAM
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Template Sequence  TDFYKKA. . FIDLDPETLGSDTMKQAFDRMTKLRSYVDDNFSGRDWNLASAMVIEGKAGL
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Query Sequence  TINGPWAWSNIDTSKVNYG. . VTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLEN
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Template Sequence  QFMGDWAKGEFVKAGKKPGEDFVCMRYPGTQGAITFNSDMFAMFKVSEDKVPAQLEMAS.
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   267..270.........280.........290.........300.........310.........320.....
 
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Query Sequence  YLLTDEGLEAVNKDKPLGAVALKSYEEEL. . AKDPRIAATMENAQKGEIMP. . . . NIPQM
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Template Sequence  AIESPTFQSAFNVVKGSAPARTDVPDTDFDACGKKAIADEKEASEKGTMLGSMAHGYANP
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   326...330.........340.........350.........360.........370.........380.....
 
   338.340.........350.........360.........370.
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Query Sequence  SAFWYAVRTAVINAASGRQTVDAALAAAQTNAAA
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Template Sequence  AAVKNAIYDVVTRQFNGQLSSEDAVKELVSAVEG
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   386...390.........400.........410.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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