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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank84Aligned Residues316
% Identity18%Templatec4gl0A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:lmo0810 protein; PDBTitle: putative spermidine/putrescine abc transporter from listeria2 monocytogenes
Resolution1.92 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
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Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  NTLTIYNWGDYID. . . PSLITKFEKETGIKVIYQTFDSNEAXXTKIEQGGTTFDIAVPSD
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TT
S
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S
T
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B
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   35....40....... ..50.........60.........70.........80.........90.
 
   66...70.........80.. .......90.........100.........110.........120....
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Query Sequence  DRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  YAISKXKEENLLIPLDHSKLPNEKYLDPRFXDLSFDDDNKYSXPYFWGTLGIIYNKEXFP
Template Known Secondary structure  TT
B



GGG
GGGGGB
GGGSS
GGGGGGSSTTT
T
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   92.......100.........110.........120.........130.........140.........150.
 
   125. ...130.........140.........150.........160.........170.........180...
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Query Sequence  NP. PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVG
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Template Sequence  DKNFDTWNALFD. . . . . . PELKNQILLIDGAREVXGLGLNSLGYSLND. . . . . . . . . . . .
Template Known Secondary structure  T

TTSGGGGG
......GGGTT
S
TT

TT
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   152.......160... ......170.........180.........190...
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  VDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNY
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Template Sequence  TNKAHLQAARDKLETXTPN. . . . VKAIVGDEIKLLXADNAGVAVTFSGEAAEXLSENEDL
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GGG....STTTS




TT
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   194.....200.........210.. .......220.........230.........240.........
 
   244.....250.........260.........270.........280.........290.........300...
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Query Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV
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Template Sequence  EYVIPK. . . . . . DGSNLWFDNXVIPKTAKNVDGAHKFIN. FXLKPENAAINAEYVGYATP
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S......S

BTT
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   251..... ...260.........270.........280... ......290.........300...
 
   304..... 310.........320.........330.........340.........350.....
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Query Sequence  ALKSYE. . . EELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGR
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Template Sequence  NAKAVELLPKEISSDERFYPDXDELNNLEVYDNLG. . KRXLSYYNELFLEFKXYR
Template Known Secondary structure  BS
T
TTTS

GGGGTT





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   304.....310.........320.........330........ .340.........350......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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