Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence83.95%DateSun Sep 7 16:46:09 BST 2014
Rank143Aligned Residues194
% Identity12%Templatec3ip5A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine
Resolution1.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   359360.........370.........380 .........390.........400.........410..
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Query Sequence  DAALAAAQTNAAAKVDILGVDF. . . . . . DNTTMLQMVENIKTFFANQSTNNLFIVTANPE
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Template Sequence  QKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVADG. . VKFVVGHFNSG
Template Known Secondary structure  TT
BTTB

TT
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   23......30.........40.........50.........60......... 70.........80
 
   413......420.........430.........440.........450......... 460....... ..
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Query Sequence  IVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIE. . LMDECLKI. AH
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Template Sequence  VS. . . . . . IPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLAD
Template Known Secondary structure  ......TT
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   81. .......90.........100.........110.........120.........130....
 
   470... ......480.........490...... ...500... ......510.........520....
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Query Sequence  VNHQ. KVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKLFKP
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Template Sequence  HFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGV
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TT


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   135....140.........150.........160.........170.........180.........190....
 
   525....530.........540.........550.........560
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Query Sequence  DYIFVGMGFPKQEEWIMTHENQFESTVMMGVGGSLE
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Template Sequence  SIIYWGGLHTEAGLIIRQAADQGLKAKLVSGDGIVS
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   195....200.........210.........220.........230
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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