Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank58Aligned Residues366
% Identity14%Templatec4ovjA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:extracellular solute-binding protein family 1; PDBTitle: extracellular solute-binding protein family 1 from alicyclobacillus2 acidocaldarius subsp. acidocaldarius dsm 446
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10........ .20.........30.. ....... 40.........50.......
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Query Sequence  IEEGKLVIWINGDKGY. NGLAEVGKKFEKDT. GIKVTVE. . . HPDKLEEKFPQVAATGDG
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Template Sequence  KPVVTLTFGFWGDAKEEAVTLAAVKAFEKAYPNIHIQTEFGGPFNQYFTKLSTEVAGGNA
Template Known Secondary structure  S





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   45....50.........60.........70.........80.........90.........100....
 
   58.60.........70.........80.. .......90.........100.........110......
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Query Sequence  PDIIFWAHDRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSL
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Template Sequence  PDIXQXDYEYIDAYAKEGQLLNLKGAKGINISTISPSVLKSGYIDGGLYGIPNALNNYAV
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   105....110.........120.........130.........140.........150.........160....
 
   117..120..... ....130.........140.........150.........160.........170.
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Query Sequence  IYNKDLLPN. . . . . PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFK
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Template Sequence  IYDEAAFAKAGYHGQRVSWQQWADILEKVHKATGKWAENDDESWQTFGYWARQHGQHLYN
Template Known Secondary structure  TTT

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   165....170.........180.........190.........200.........210.........220....
 
   172.......180.........190.........200........ .210.........220.....
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Query Sequence  YENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . . . . . TDYSIAEAAFNKGETAM
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Template Sequence  ASGTK. . . . . LGFTESTLVSYLNYWANLRKEGVVPPGTVTSLIKQTADPTDPXVQGKSDA
Template Known Secondary structure  TTSSS.....S
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   225.... 230.........240.........250.........260.........270.........
 
   226...230......... 240.........250... ......260.........270.........280...
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Query Sequence  TINGPWAWSNIDTS. KVNYGVTVLPTFKG. QPSKPFVGVLSAGINAASPNKELAKEFLEN
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Template Sequence  ELTWVNYVVSLQSEXTRSLALALPPTQPGGEEGLYIKPSQFWSIYSKTKYPQQAELFVN.
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   280.........290.........300.........310.........320.........330........
 
   284.....290.........300.........310..... ....320.........330. ....
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Query Sequence  YLLTDEGLEAVNKDKPLGAVALKSYEEELAKD. . . . . . PRIAATMENAQKGEIM. . PNIP
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Template Sequence  FLLNNVQAGKALGLVRGIPVSSSVRTQLXASGTSAPEKAEFQLVNEALKVATPIDPPPPQ
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   339340.........350.........360.........370.........380.........390........
 
   336...340.........350.........360.........370....
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Query Sequence  QMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAKVD
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Template Sequence  HDKEIDQDFANXVQAVQYGKETPQQGAEQFXQEANDLLQ
Template Known Secondary structure  TTTSS
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   399400.........410.........420.........430.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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