Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence49.87%DateSun Sep 7 16:46:09 BST 2014
Rank234Aligned Residues197
% Identity7%Templatec3n0xA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370... ......380. ........390.........400.........410
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Query Sequence  VDAALAAAQTNAAAKV. DILGVDFD. . . . . . NTTMLQMVENIKTFFANQSTNNLFIVTAN
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Template Sequence  TETGLXXGLEYATKGTXTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGAD. . IAIGTS
Template Known Secondary structure  TTT

TT
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   38.40.........50.........60.........70.........80......... 90.....
 
   411........420.........430.........440.........450.........460.........470
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Query Sequence  PEIVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHV
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Template Sequence  SSAAALADL. . PVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGK
Template Known Secondary structure  S..T


S


GGGGTTT

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   96...100.... .....110.........120.........130.........140.........150...
 
   471........480.........490...... ...500... ......510.........520.....
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Query Sequence  NHQKVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKLFKPD.
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Template Sequence  QGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDK
Template Known Secondary structure  TTSSTTTT

TT



TT
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   154.....160.........170.........180.........190.........200.........210...
 
   526...530.........540.........550........
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Query Sequence  . . YIFVGMGFPKQEEWIMTHENQFESTVMMGVGGS
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Template Sequence  PGKKIIWVIWAGGGDPLTKLQDXDPKRYGIELSTG
Template Known Secondary structure  SS


SSS
T
GGGGT
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   214.....220.........230.........240........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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