Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.01%DateSun Sep 7 16:46:09 BST 2014
Rank116Aligned Residues228
% Identity18%Templatec3muqB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10......... 20.........30.........40.........50.........60.....
Predicted Secondary structure 



.














Query SS confidence 












.













































Query Sequence  KLVIWINGDKGYN. GLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
Query Conservation   
 

        . 
      


  



     

   

  
  

  


     
Alig confidence 












.























..



















Template Conservation     
    
    

   
   


 


 
      
..            
       
Template Sequence  HVRLATTTSTYHSGLLDYLLPQFEKDTGYKVDVIAAGT. . GKALKXGENGDVDLVXTHAP
Template Known Secondary structure  TGGGGT


..TTSSS

Template Predicted Secondary structure 









..







Template SS confidence 



























































   28.30.........40.........50.........60..... ....70.........80.....
 
   66...70.........80.........90.........100.........110.........120.....
Predicted Secondary structure 













Query SS confidence 



























































Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
Query Conservation           
 
 

       
            


 



       
 





 
Alig confidence 












..........................
















.


Template Conservation       
   
   ..........................                 .   
Template Sequence  KAEGTFVEKGYGV. . . . . . . . . . . . . . . . . . . . . . . . . . LPRKLXYNDFVIVGPKA. DPA
Template Known Secondary structure  TTS..........................
TT.
TT
Template Predicted Secondary structure 




..........................





.


Template SS confidence 



























































   86...90........ .100.........110..... ...
 
   126...130.........140.........150.........160.........170.........180.....
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
Query Conservation 

 




   




  
                 
   

       
  
     
 
Alig confidence 
































...........................
Template Conservation     
  

                         ...........................
Template Sequence  KIKDDESVLDVFKEIANKNATFISRGDDSGTHK. . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

TT
S
TT



S
S...........................
Template Predicted Secondary structure 














...........................
Template SS confidence 



























































   119120.........130.........140.........150.
 
   186...190.........200.........210.........220.........230.........240.....
Predicted Secondary structure 



















Query SS confidence 



























































Query Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV
Query Conservation 

   


     
   
              
  

 

 
 
 
            

Alig confidence  ...
























































Template Conservation  ...                                                         
Template Sequence  . . . KEXGFWAQTKIEPNFGGYRSVGQGXGPTLNXASEXQGYTXSDRGTWLAYQNKLDLEI
Template Known Secondary structure  ...T



STT



T
GGG
S
Template Predicted Secondary structure  ...



















Template SS confidence 



























































   152.......160.........170.........180.........190.........200........
 
   246...250.........260.........270.........280.........290......
Predicted Secondary structure 

















Query SS confidence 


















































Query Sequence  TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNK
Query Conservation 
 

   
       
     
 
 






  

   
 
 
       
Alig confidence 



..






























.












Template Conservation    
 ..                         
  


.

 
 


 

  
Template Sequence  LFQG. . DEKLFNPYQVILVNPERYPTINYQGAKAFSD. WLVNPRGQELING
Template Known Secondary structure 

..
GGG
TTT
TTS
.S
Template Predicted Secondary structure 

..












.

Template SS confidence 


















































   209210.. .......220.........230.........240... ......250......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D