Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank85Aligned Residues285
% Identity21%Templatec3ombA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30......... 40.........50.........60....
Predicted Secondary structure 








..








Query SS confidence 
































. .
























Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFWA
Query Conservation   
 

         
      


  



   ..  

   

  
  

  


    
Alig confidence 
































..
























Template Conservation                     
  

 


 
        
   

   



  



   
Template Sequence  TVLVKKNANQEKXANXQWAKDLEADCDCKIEWQEVTREAWAQQKNATLASGDIADVNLNG
Template Known Secondary structure 
TTB

GGG
TST


SSS
Template Predicted Secondary structure 





















Template SS confidence 



























































   42.......50.........60.........70.........80.........90.........100.
 
   65....70.........80... ......90.........100.........110...
Predicted Secondary structure 








.......




....
Query SS confidence 


















. . . . . . .





























. . . .
Query Sequence  HDRFGGYAQSGLLAEITPD. . . . . . . KAFQDKLYPFTWDAVRYNGKLIAYPIAVEA. . . .
Query Conservation            
 
 

   .......    
            


 



     ....
Alig confidence 


















.......





























....
Template Conservation            
 
 

   
                       




 

         
Template Sequence  YGAVEAYQYPGXFEDLSKDLDKLPNVKAFFKQKPDAKKXSTDSKGRIYAIADGRGKAYSG
Template Known Secondary structure 

TSTTSB

GGGGGGG



TTS

SS

GGG
S
Template Predicted Secondary structure 



















Template SS confidence 



























































   102.......110.........120.........130.........140.........150.........160.
 
   114.....120.... .....130.........140.........150.. ..
Predicted Secondary structure  ......









.............

Query SS confidence  . .










. . . .



























. . . . . . . . . . . . .

Query Sequence  . . LSLIYNKDLLP. . . . NPPKTWEEIPALDKELKAKGKSALMFNL. . . . . . . . . . . . . QE
Query Conservation  ..  
 





 ....


 




   




  
        .............  
Alig confidence  ..










....



























.............

Template Conservation          

 
   

  
 
 

        
   
   
                  
Template Sequence  TGQHXLINKAWLDKLGLQVPTTWDELENVLKAFKTQDPNGNGQADEIPXNIKKLEGSYFT
Template Known Secondary structure 
S
T




BS
TT
SSSS







SSS

Template Predicted Secondary structure 































Template SS confidence 



























































   162.......170.........180.........190.........200.........210.........220.
 
   155....160...... ...170.........180.........190.........200....
Predicted Secondary structure 
..........



















Query SS confidence 











. . . . . . . . . .





































Query Sequence  PYFTWPLIAADG. . . . . . . . . . GYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH
Query Conservation         
   
..........
       
  
     
 

   


     
   
 
Alig confidence 











..........










...























Template Conservation                                   ...            
     
   
 
Template Sequence  WYSPXLLLNSTGIVTGFNKGVSEYGFYAKNGVV. . . KSFLTSDEYKEVIKYYHKLISEGL
Template Known Secondary structure  TT
GGGGGGGGT



TTSSGGGGTTT...GGGSTTS
Template Predicted Secondary structure 












...







Template SS confidence 



























































   222.......230.........240.........250.... .....260.........270........
 
   205... .210.........220.........230...... ...240.........250....
Predicted Secondary structure 



...






...











....
Query SS confidence 



. . .



























. . .

















. . . .
Query Sequence  MNAD. . . TDYSIAEAAFNKGETAMTINGPWAWSNI. . . DTSKVNYGVTVLPTFKGQ. . . .
Query Conservation      ...         
  

 

 
 
 
     ...       


 

   
 ....
Alig confidence 



...



























...

















....
Template Conservation 
  
                                                        
Template Sequence  IPAEWATKDDDAYNADQISDGKTAKTGVVFGWSPSDNFGKLKDQYIAXPVPSAPGVSPDQ
Template Known Secondary structure  S
TTGGG

TTSSS

S
GGGGGG



B
TT

GGG
Template Predicted Secondary structure 

































Template SS confidence 



























































   279280.........290.........300.........310.........320.........330........
 
   255....260.........270.........280.........290.....
Predicted Secondary structure  ....










Query SS confidence  . . . .








































Query Sequence  . . . . PSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVN
Query Conservation  ....      
     
 
 






  

   
 
 
      
Alig confidence  ....



























.











Template Conservation                  
   

  
 
  


. 
 
 
      
Template Sequence  TVWDGSSSELSPAGLSISSHAANKDAALKLAN. LLYSEKYSVQQF
Template Known Secondary structure 






SSBTT
TT.TS
Template Predicted Secondary structure 
















.
Template SS confidence 












































   339340.........350.........360.........370 .........380..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D