Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank61Aligned Residues362
% Identity16%Templatec3oo6A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.. .......20.........30......... 40.........50.........60
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Query Sequence  EGKLVIWI. . NGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDI
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Template Sequence  NGPITFGSNYSDEAPKAAFASLMQQATTSTTVPVTVNTTDHNTFQNNISNYLQGTPDSLA
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   16...20.........30.........40.........50.........60.........70.....
 
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Query Sequence  IFWAHDRFGGYAQSGLLAEITP. . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY
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Template Sequence  TWFAGYRLQFFAAQGLLTPIDDVWDKIGGTFNDAAKSLSKGLDGHYYLVPLYNYPWVVFY
Template Known Secondary structure 
TTTT
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   76...80.........90.........100.........110.........120.........130.....
 
   119120.... .....130.........140.........150..... ....160.........170
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Query Sequence  NKDLLP. . . . NPPKTWEEIPALDKELKAKGKSALMFNLQEP. . . . YFTWPLIAADGGYAF
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Template Sequence  NKSVFQSKGYEVPASWEAFIALARKMQSDGLVPLAFADKDGWPALGTFDILNLRINGYDY
Template Known Secondary structure  T




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   136...140.........150.........160.........170.........180.........190.....
 
   171........180.........190.........200........ .210.........220.........
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Query Sequence  KYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. TDYSIAEAAFNKGETAMTING
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Template Sequence  HIKL. . . MKHEVPWTDPGVTKVFDQWRELAAYQQKGANGRTWQDAAKALENKQAGMMFQG
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   196... 200.........210.........220.........230.........240.........250..
 
   230......... 240.........250.........260 .........270.........280.....
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Query Sequence  PWAWSNIDTS. . KVNYGVTVLPTFKGQPSKPFV. . GVLSAGINAASPNKELAKEFLENYL
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Template Sequence  SNQVAANYSAKNLPDLDFFVFPAINPQYGTDYMDAPTDGFILPKKGKNAAAAKKVLQ. YI
Template Known Secondary structure  S
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   253......260.........270.........280.........290.........300......... 310.
 
   286...290.........300.........310.........320.........330....... ..340..
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Query Sequence  LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQM. . . SAFWY
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Template Sequence  GTAEAEAAFLKTDHWDVGLANGLIAP. TYNDIQKKSVAEIGKCKSVSQFMDRDTVPDMAN
Template Known Secondary structure  TSTT

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   312.......320.........330....... ..340.........350.........360.........370
 
   343......350...... ...360.........370.
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Query Sequence  AVRTAVINAASGRQ. . TVDAALAAAQTNAAA
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Template Sequence  AMIKLIQQFIDQPTPETIATVQKSAEDQAKT
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S
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   371........380.........390.........400.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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