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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank86Aligned Residues316
% Identity20%Templatec3rpwA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.... .....30.........40.........50........ .60....
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Query Sequence  KLVIWINGDKGYNGLAEV. GKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGP. DIIFWA
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Template Sequence  VVIXQDPGGGYGDALRKVXYDPFEKETGIKVVTVQEARSGPRIKAQAEAGKAQWDLTFIF
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   31........40.........50.........60.........70.........80.........90
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  . DQETKLLGDCCLADIDYSK. LSESAHKTLAAXPDNLKRKKGVALQVIGVGLVYNKDKFK
Template Known Secondary structure  .TB



GGG.S
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GGGTTTTTS
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   91........100......... 110.........120.........130.........140........
 
   125....130.........140.........150.........160.........170.........180..
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Query Sequence  . . NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDV
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Template Sequence  GDKAPQTWADFWDVKK. . . . . FPGRRCXPAWPRFTFEAALXADGVTKDK. . . . . . . . . . .
Template Known Secondary structure  TTSS

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TTT.....S
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   149150.........160.... .....170.........180.........190..
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  GVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN
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Template Sequence  . LYPIDXDRALKKLKEIKPHVVKWW. TTAAQPPQLILDGEADXCLAYTGSXSKLALEGAP
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GGG.
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   193......200.........210...... ...220.........230.........240.........250
 
   243......250.........260.........270.........280.........290.........300..
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Query Sequence  YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGA
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Template Sequence  IDLTFNQ. . . . . . . . GFVYYDFFSIPKGAPNYDNALKLLS. WRLDPKRAAQLTSTFPVAL
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   251...... ..260.........270.........280.. .......290.........300.
 
   303......310..... ....320.........330.. .......340.........350.
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Query Sequence  VALKSYEEELAKD. . PRIAATMENAQKGEIMP. . . . . . NIPQMSAFWYAVRTAVINA
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Template Sequence  PSKVVFDAATDKNIARYWANNPENVAKAIEWSPDFWGAPSPAGNSTNEEYGQEKLNA
Template Known Secondary structure  S

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GGGGGGSTTSS



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   302.......310.........320.........330.........340.........350........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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