Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence70.76%DateSun Sep 7 16:46:09 BST 2014
Rank168Aligned Residues115
% Identity12%Templatec4pddA_
PDB info PDB header:solute-binding proteinChain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 polaromonas sp js666 (bpro_0088, target efi-510167) bound to d-3 erythronate
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40..... ....50.........60.........
Predicted Secondary structure 






..


..








Query SS confidence 



















. .











. .























Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWAHDRFG
Query Conservation         
      


  
..


     

  .. 

  
  

  


         
Alig confidence 



















..











..











.










Template Conservation            

  
 
 
 
 
 
     
 
         
  
  .
          
Template Sequence  DSHYGVGATTFCDEVEKGTQERYKCQHFPSSALGGEREMIESVQLGTQ. DLVNTSTGPLG
Template Known Secondary structure  SSTTTS

TTTT

TSS.
STTGG
Template Predicted Secondary structure 














.



Template SS confidence 



























































   44.....50.........60.........70.........80.........90. ........100..
 
   70.........80.. .......90.........100.........110.........120.
Predicted Secondary structure 






........




Query SS confidence 












. . . . . . . .






































Query Sequence  GYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
Query Conservation       
 
 

  ........     
            


 



       
 



Alig confidence 












........




































..
Template Conservation     
   
  

                                
     
       ..
Template Sequence  NFVPETRIVDIPFLFRDYEHARKVMDGAIGQDLLKKMQAKGLIGLAWTENGFRHMTNS. .
Template Known Secondary structure  GT
GGGGGGGSTT


SSTTS..
Template Predicted Secondary structure 


















..
Template SS confidence 



























































   103......110.........120.........130.........140.........150.........160
 
   122.......130...
Predicted Secondary structure 




Query SS confidence 











Query Sequence  LLPNPPKTWEEI
Query Conservation 

 


 




Alig confidence  ..









Template Conservation  ..  

 
  

Template Sequence  . . KRPILQASDA
Template Known Secondary structure  ..S



S
Template Predicted Secondary structure  ..





Template SS confidence 











   161........170
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D