Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence98.29%DateSun Sep 7 16:46:09 BST 2014
Rank123Aligned Residues248
% Identity18%Templatec4exlD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:phosphate-binding protein psts 1; PDBTitle: crystal structure of phosphate abc transporter, periplasmic phosphate-2 binding protein psts 1 (pbp1) from streptococcus pneumoniae canada3 mdr_19a
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30. ........40.........50.........60.....
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKD. TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  SITAVGST. ALQPLVEVAADEFGTIHVGKTVNVQGGGS. . GTGLSQVQSGAVDIGNSDVF
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G.GGSTT

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   32....... 40.........50.........60........ .70.........80........
 
   66...70.........80.........90.........100.........110.........120.....
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Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
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Template Sequence  AEEKDGIDASALVD. . . . . . . . . . . . . . . . . . . . . . . . . . . HKVAVAGLALIVNKEV. DV
Template Known Secondary structure  GGGSTT

GGG
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   8990.........100.. .......110........ .120
 
   126...130.........140.........150.........160.........170.........180.....
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Query Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
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Template Sequence  DNLTTEQLRQIF. . . . . . . . . . . . . . . . . . . . . . . . . . . IGEVTNWKEVGGKDLPISVIN
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BGGGGTS
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   121........130.. .......140.........150...
 
   186...190.........200........ .210.........220.........230.........240.
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Query Sequence  NAGAKAGLTFLVDLIKNKHMNAD. . . . TDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  RAAGSGSRATFDTVIMEGQSAMQSQEQDSNGAVKSIVSKSPGAISYLSLTYID. . DSVKS
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   154.....160.........170.........180.........190.........200...... ...210.
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  MKLNGYDLSPENISSNNWPLWSYEHMYTLGQPNELAAEFLN. FVLSDETQEGIVKGLKYI
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TTB


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   212.......220.........230.........240.........250.. .......260.........270
 
   302.......310.....
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Query Sequence  AVALKSYEEELAKD
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Template Sequence  PIKEMKVEKDAAGT
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GGG
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   271........280....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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