Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank89Aligned Residues276
% Identity20%Templated1y4ta_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30......... 40.........50.........60....
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFWA
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Template Sequence  ELNIYSARHY. . NADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITAD
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..T




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   6...10..... ....20.........30.........40.........50.........60...
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  ISNLTEAKNLGLLSPVSS. . . . . . KYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNI
Template Known Secondary structure  TT




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GGGB
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   64.....70.........80. ........90.........100.........110.......
 
   125....130.........140.........150.........160.........170.........180..
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Query Sequence  . . NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDV
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Template Sequence  DISKMKNYEDL. . . . . . AKAEFKGEIVMRSATAPYSKTLLASI. . . . . . . . . . . . . . . . .
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TT

SGGGG......G
GGGTT



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   118.120........ .130.........140.........150....
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  GVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN
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Template Sequence  . IANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNP
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BSSS

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   155....160.........170.........180.........190.........200.........210...
 
   243......250.........260.........270.........280.........290.......
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Query Sequence  . . . . . YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD
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Template Sequence  KDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFME. FMLSPEIQKILTDS
Template Known Secondary structure  T
TTTTTT
B
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   214.....220.........230.........240.........250........ .260.........270..
 
   298.300.........310.....
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Query Sequence  KPLGAVALKSYEEELAKD
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Template Sequence  NYEFPIRNDVELSQTVKD
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   273......280.........290
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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