Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence28.11%DateSun Sep 7 16:46:09 BST 2014
Rank333Aligned Residues178
% Identity10%Templatec4pe5A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:glutamate receptor ionotropic, nmda 1; PDBTitle: crystal structure of glun1a/glun2b nmda receptor ion channel
Resolution3.96 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380...... ...390.........400.........410......
Predicted Secondary structure 













.






Query SS confidence 




























.





























Query Sequence  VDAALAAAQTNAAAKVDILGVDFDNTTML. QMVENIKTFFANQSTNNLFIVTANPEIVNY
Query Conservation   



  

  
 
 
 


   
  
  .                   
   
      
Alig confidence 




























.












..







.......
Template Conservation     
   

  

    
     
               
   .. 
 



 .......
Template Sequence  HEQMFREAVNQANKRIQLQATSVTHKPNAIQMALSVCEDLISS. . QVYAILVS. . . . . . .
Template Known Secondary structure 



SSTGGG..

.......
Template Predicted Secondary structure 











..



.......
Template SS confidence 



























































   38.40.........50.........60.........70.........80 ........
 
   417..420.........430.. .......440.........450......... 460.........470...
Predicted Secondary structure 




.











..


Query SS confidence 















.


























. .













Query Sequence  ATTHQAYLELINQASY. IVADGTGVVKASHRLKQPLAHRIPGIE. . LMDECLKIAHVNHQ
Query Conservation               
  .   

  
             

 
 
..
   
         
Alig confidence  .














.


























..













Template Conservation  . 

  
  
     

 

   
   

         
  
       

  

    
Template Sequence  . HTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNW
Template Known Secondary structure  .


TT

SS


GGGG
TTT
TTSS

GGGT
Template Predicted Secondary structure  .
























Template SS confidence 



























































   94.....100.........110.........120.........130.........140.........150..
 
   474.....480.........490....... ..500... ......510.........520........
Predicted Secondary structure  .





..

..











Query SS confidence  .























. .





. .
























Query Sequence  . KVFLLGATNEVVEAAQYALQQRYP. . NISFAH. . HHGYIDLEDETVVKRIKLFKPDYIF
Query Conservation  .    

            
    
..      ..  
            
         
Alig confidence  .























..





..
























Template Conservation    
 


     
      
          
           
    
  
      


Template Sequence  NHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTKNVTALLMEARELEARVII
Template Known Secondary structure 
SSTTSS

TT
S

SSS

Template Predicted Secondary structure 














Template SS confidence 



























































   161........170.........180.........190.........200.........210.........220
 
   529530.........540.....
Predicted Secondary structure 



Query SS confidence 
















Query Sequence  VGMGFPKQEEWIMTHEN
Query Conservation 
  
 
 

        
Alig confidence 
















Template Conservation 
         

  
  
Template Sequence  LSASEDDAATVYRAAAM
Template Known Secondary structure 

Template Predicted Secondary structure 

Template SS confidence 
















   221........230.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D