Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.97%DateSun Sep 7 16:46:09 BST 2014
Rank97Aligned Residues269
% Identity21%Templated1nnfa_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30......... 40.........50.........60....
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFWA
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Template Sequence  DITVYNGQQK. . EAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQ
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   1........10 .........20.........30.........40.........50........
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  TATFADLSEAGLLAPI. . . . . SEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLS
Template Known Secondary structure  GGGTT
B


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   5960.........70.... .....80.........90.........100.........110...
 
   125. ...130.........140.........150.........160.........170.........180..
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Query Sequence  NP. . PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDV
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Template Sequence  EKDMEKSVLDYATP. . . . KWKGKIGYVSTSGAFLEQVVALSKMKGD. . . . . . . . . . . . . .
Template Known Secondary structure  GGGS
SSGGGGGSG....GGTTT
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   114.....120....... ..130.........140.........150.....
 
   183......190.........200.........210.........220.........230........ .240
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Query Sequence  GVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT. . SK
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Template Sequence  . . . . . . . KVALNWLKGLKENGKLYA. . KNSVALQAVENGEVPAALINNYYWYNLAKEKGV
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S..STTS
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   156...160.........170... ......180.........190.........200......
 
   241........250.........260.........270.........280.........290.........300
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Query Sequence  VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPL
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Template Sequence  ENLKSRLYF. VRHQDPGALVSYSGAAVLKASKNQAEAQKFVD. FLASKKGQEALVAARAE
Template Known Secondary structure  GG
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   207..210..... ....220.........230.........240....... ..250.........260....
 
   301........310.
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Query Sequence  GAVALKSYEEE
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Template Sequence  YPLRADVVSPF
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   265....270.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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