Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.93%DateSun Sep 7 16:46:09 BST 2014
Rank101Aligned Residues293
% Identity13%Templated2onsa1
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.55

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30. ........ 40.........50.........60.
Predicted Secondary structure 






.


..







Query SS confidence 


























.







. .





















Query Sequence  EGKLVIWINGDKGYNGLAEVGKKFEKD. TGIKVTVE. . HPDKLEEKFPQVAATGDGPDII
Query Conservation   
 
 

         
      


 . 



   ..  

   

  
  

  


 
Alig confidence 









.















.







..








...









Template Conservation   




  

.
        
  

   
 
 
             
...   
  


 
Template Sequence  NVKLKVFHAG. SLTEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKV. . . TELGRKADVI
Template Known Secondary structure 
G.GG
TT
...TS



S
Template Predicted Secondary structure 



.






...





Template SS confidence 



























































   32.......40. ........50.........60.........70....... ..80.......
 
   62. ......70.........80.. .......90.........100.........110.......
Predicted Secondary structure  .









...




Query SS confidence 

.


















. . .


































Query Sequence  FW. AHDRFGGYAQSGLLAEITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLI
Query Conservation    .           
 
 

  ...     
            


 



       
 
Alig confidence 

.


















...


































Template Conservation                
 
  
                                        
Template Sequence  ATADYTLIQKMMYPEFANWTIMFAKNQIVLAYRNDSRYADEINSQNWYEILKRPDVRFGF
Template Known Secondary structure  SSTTTT
S




TTSTTTTT

TTTTSTT

Template Predicted Secondary structure 

































Template SS confidence 



























































   88.90.........100.........110.........120.........130.........140.......
 
   118.120.........130.........140.........150.........160.........170.......
Predicted Secondary structure 




















Query SS confidence 



























































Query Sequence  YNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKY
Query Conservation 





 


 




   




  
                 
   

       
  
Alig confidence 



























































Template Conservation   
                                                          
Template Sequence  SNPNDDPCGYRSLMAIQLAELYYNDPTIFDELVAKNSNLRFSEDNGSYVLRMPSSERIEI
Template Known Secondary structure 
TTT
TT
TTTGGGBS

TT


GGG

B
Template Predicted Secondary structure 










































Template SS confidence 



























































   148.150.........160.........170.........180.........190.........200.......
 
   178.180.........190.........200.........210.........220.........230.......
Predicted Secondary structure 






















Query SS confidence 



























































Query Sequence  DIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNID
Query Conservation 
     
 

   


     
   
              
  

 

 
 
 
      
Alig confidence 








.....





















..





















Template Conservation           .....           
          ..                      
Template Sequence  NKSKIMIRS. . . . . MEMELIHLVESGELDYFFIYKS. . VAKQHGFNFVELPVEIDLSSPD
Template Known Secondary structure 
TTTS.....SGGGTS
S..TT


TTTSS

GG
Template Predicted Secondary structure 








.....








..





Template SS confidence 



























































   208.210...... ...220.........230........ .240.........250.........260
 
   238.240.........250.........260.........270.........280.........290.......
Predicted Secondary structure 























Query SS confidence 



























































Query Sequence  TSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD
Query Conservation        


 

   
       
     
 
 






  

   
 
 
        
Alig confidence 











.































.













Template Conservation              .                
   
   
 
  

 .

 
 
 
      
Template Sequence  YAELYSKVKVVL. ANGKEVTGKPIVYGITIPKNAENRELAVEFVK. LVISEEGQEILREL
Template Known Secondary structure  GTT
.TTS






TT
TT.ST
Template Predicted Secondary structure 






.













.


Template SS confidence 



























































   261........270.. .......280.........290.........300.... .....310........
 
   298.300.........310
Predicted Secondary structure 









Query SS confidence 












Query Sequence  KPLGAVALKSYEE
Query Conservation      
    
   
Alig confidence 












Template Conservation 
  
     
   
Template Sequence  GQEPLVPPRADTA
Template Known Secondary structure  T

SS
Template Predicted Secondary structure 












Template SS confidence 












   319320.........330.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D