Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank68Aligned Residues365
% Identity15%Templatec3i3vC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.. .......20.........30 ......... 40.........50.......
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Query Sequence  IEEGKLVIWI. . . NGDKGYNGLAEVGKKFEK. DTGIKVTVE. HPDKLEEKFPQVAATGDG
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Template Sequence  SDPDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKE
Template Known Secondary structure 
STTS
SSSSTT
TT

STTTT

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   37..40.........50.........60.........70.........80.........90......
 
   58.60.... .....70.........80.. .......90.........100.........110..
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Query Sequence  PDIIFWA. HDRFGGYAQSGLLAEITP. . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVE
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Template Sequence  ADVVXVNLYDKTLAWTDVGATVDVKPYLDDWGLRGRVLPAALADWTDDEGRVRAFPYFAT
Template Known Secondary structure 
S

STTGGGTSS


GGG
TTSB
TB
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SB

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   97..100.........110.........120.........130.........140.........150......
 
   113......120..... ....130.........140.........150.........160.......
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Query Sequence  ALSLIYNKDLLPN. . . . . PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGG
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Template Sequence  NWPVAYNRALLDRAGVDAIPTTGDQLIAAARKLRAKGIAPVTVGGND. WTGQKLLAQIIQ
Template Known Secondary structure 
T

S


BTT


TTS.G
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   157..160.........170.........180.........190.........200... ......210.....
 
   168.170.........180.........190.........200........ .210.........220....
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Query Sequence  YAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . . TDYSIAEAAFNKGETA
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Template Sequence  TFLSQDEARHVYSTGDFGVRGARLGIEYFAHLRDAGVFADKAQGLTSDSXTTQFNTEEAA
Template Known Secondary structure  GG

T
TTSTT
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   216...220.........230.........240.........250.........260.........270.....
 
   225....230......... 240.........250....... ..260.........270.. .....
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Query Sequence  MTINGPWAWSNIDTS. KVNYGVTVLPTFKGQPSK. . . . . PFVGVLSAGINAASP. NKELA
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Template Sequence  VQSAXSSALAKVPEKVAGHTEVGGWPLADGAAHDGPTVIRAYTLIGFWISPNGVRKIEQV
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TTS
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   276...280.........290.........300.........310.........320.........330.....
 
   278.280.........290.........300.........310.........320........ .330.....
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Query Sequence  KEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG. . EIMPNIP
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Template Sequence  EKFLR. FXYRPDVVARFVTESGRDXALRTD. . AVSTGFPLVGAAQRLGSEVSQVLLPDVY
Template Known Secondary structure  .TS

SB

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   336...340 .........350.........360.... .....370.........380.........390..
 
   336...340.........350.........360.........370.
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Query Sequence  QMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAA
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Template Sequence  VPPAAAQPLITATSTSFTRGTSPARVRAALESAYRS
Template Known Secondary structure  S
STT

TT

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   393......400.........410.........420........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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