Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence29.11%DateSun Sep 7 16:46:09 BST 2014
Rank324Aligned Residues97
% Identity15%Templatec4bubA_
PDB info PDB header:ligaseChain: A: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate--ld-lysine PDBTitle: crystal structure of mure ligase from thermotoga maritima2 in complex with adp
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   441........450.. .......460.........470....... ..480.........490...
Predicted Secondary structure 




......








.


Query SS confidence 











. . . . . .
























.















Query Sequence  VKASHRLKQPLA. . . . . . HRIPGIELMDECLKIAHVNHQKVFL. LGATNEVVEAAQYALQ
Query Conservation              ...... 

 
 

   
             .

            
 
Alig confidence 











......
























.















Template Conservation 

 
  


    
   
       

 
 
      
  



 
 

 
   

  
 
Template Sequence  IAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLLKNVR
Template Known Secondary structure  TTT

TTTTT


BTTBS
GGGTTTT




S
Template Predicted Secondary structure 



















Template SS confidence 



























































   301........310.........320.........330.........340.........350.........360
 
   494.....500.. .......510.........520.........530.......
Predicted Secondary structure 


..
















Query SS confidence 








. .


































Query Sequence  QRYPNISFA. . HHHGYIDLEDETVVKRIKLFKPDYIFVGMGFPKQE
Query Conservation     
     ..   
            
         
  
 
 

Alig confidence 








..


































Template Conservation       
 
 
 
                     
 



      
Template Sequence  KISQGRVIVVFGAGGNSDRGKRPXXSEVASKLADVVILTTDDPRGE
Template Known Secondary structure 
SS



TTS
SSTT
S




SSS
Template Predicted Secondary structure 






















Template SS confidence 













































   361........370.........380.........390.........400......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D