Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank88Aligned Residues310
% Identity19%Templatec4edpA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter, substrate-binding protein; PDBTitle: 1.85 angstrom resolution crystal structure of an abc transporter from2 clostridium perfringens atcc 13124
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60......
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHD
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Template Sequence  KLVVSTWGLNEDVLKETVFEPFAKEHGVEIVLDIGNNSERLTKMKNNPNSQIDITYLAES
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   33......40.........50.........60.........70.........80.........90..
 
   67..70.........80.........90.........100.........110.........120......
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Query Sequence  RFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNP
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Template Sequence  FAEQGVEAGIFDKLDYS. . KIPNASEMNEKAKSTVEAGYGPAYTLNSIGIVVDPSAGIE.
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GG..G
GGGGGB
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   93......100......... 110.........120.........130.........140.........
 
   127..130.........140.........150.........160.........170.........180......
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Query Sequence  PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDN
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Template Sequence  INSWEDL. . WKPELKNKIAIPDITTTNGPAMVEIAAEKAGVD. . . . . . . . . . . . . . . VKT
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SGGGG..G
GGGTT

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   150...... ...160.........170.........180......... 190..
 
   187..190.........200.........210.........220.........230.........240......
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Query Sequence  AGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVT
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Template Sequence  DNGEAAFKELEALKPNVV. KTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINV
Template Known Secondary structure  TTGGG.

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   193......200.........210 .........220.........230.........240.........250.
 
   247..250.........260.........270.........280.........290.........300......
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Query Sequence  VLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALK
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Template Sequence  IPE. . . . . . SGTYLNFNTININKNSKNKDLAYEFIN. YALSKEVQEKTAKALNESPVNKE
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T......T

BBTT
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   252.. .....260.........270.........280. ........290.........300....
 
   307.. 310.........320.........330. ........340....
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Query Sequence  SYE. EELAKDPRIAATMENAQKGEIM. . . PNIPQMSAFWYAV
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Template Sequence  VKLSEEETKNLTYGPVVDNAKVIDFKFVNSVMDQWVNNWNRI
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   305....310.........320.........330.........340......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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