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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank25Aligned Residues373
% Identity97%Templatec4b3nA_
PDB info PDB header:sugar binding protein/ligaseChain: A: PDB Molecule:maltose-binding periplasmic protein, tripartite PDBTitle: crystal structure of rhesus trim5alpha pry/spry domain
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
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Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
Template Known Secondary structure 


SSS





TTT
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SG
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   5....10.........20.........30.........40.........50.........60....
 
   66...70.........80.........90.........100.........110.........120.....
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Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
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Template Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
Template Known Secondary structure  GGT
B





B
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   65....70.........80.........90.........100.........110.........120....
 
   126...130.........140.........150.........160.........170.........180.....
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Query Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
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Template Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
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SBTTTTT



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   125....130.........140.........150.........160.........170.........180....
 
   186...190.........200.........210.........220.........230.........240.....
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Query Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV
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Template Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV
Template Known Secondary structure  STTSS
TT

TT

GGGT

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   185....190.........200.........210.........220.........230.........240....
 
   246...250.........260.........270.........280.........290.........300.....
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Query Sequence  TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL
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Template Sequence  TVLPTFKGQPSKPFVGVLSAGIDAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL
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TT


BTT
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   245....250.........260.........270.........280.........290.........300....
 
   306...310.........320.........330.........340.........350.........360.....
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Query Sequence  KSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAA
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Template Sequence  KSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDA
Template Known Secondary structure  TTSS


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   305....310.........320.........330.........340.........350.........360....
 
   366...370........
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Query Sequence  QTNAAAKVDILGV
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Template Sequence  QTRITRRVFRLDM
Template Known Secondary structure  T





S
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   365....370.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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