Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence26.05%DateSun Sep 7 16:46:09 BST 2014
Rank350Aligned Residues152
% Identity13%Templatec4p8bA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:trap-type transporter, periplasmic component; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound3 (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate)
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40.... .....50.........60.......
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . . . EEKFPQVAATGDGPDIIFWAHDR
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Template Sequence  AFPWGKGGEIWADLVKQRTNGRINIKLYPGTSLVAGDQTREFSAIRQGVI. DXAVGSTIN
Template Known Secondary structure  TSTTT
S
GGGGGGTT
GGGTSS.S
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   42.......50.........60.........70.........80.........90. ........100
 
   68.70.........80.. .......90.........100.........110.........
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Query Sequence  FGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYN
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Template Sequence  WSPQVRELNLFSLPFLXPDYKALDALTQGEVGKSIFATLEKAGVVPLAWGENGFREVSNS
Template Known Secondary structure  TTT
GGGGGGGSTT


STSTT
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   101........110.........120.........130.........140.........150.........160
 
   120.........130.........140.........150.........160.........170.........
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Query Sequence  KDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDI
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Template Sequence  K. . . . REIRKPEDL. . . . . . . . . . . . KGXKLRVVGSPLYIETFNALGANPTQ. . . . . . . .
Template Known Secondary structure  S....



SGGGG............TT

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   161 ........170 .........180.........190......
 
   180.........190....
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Query Sequence  KDVGVDNAGAKAGLT
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Template Sequence  . . . . XSWADAQPAXA
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   197..200.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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