Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank50Aligned Residues360
% Identity22%Templatec3uorB_
PDB info PDB header:sugar binding proteinChain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.. ....... 40.........50.........60...
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDT. GIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFW
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Template Sequence  TVRFWAMG. KEAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADGLPDVCQL
Template Known Secondary structure  T.TTTSTT

TTTTTTT


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   2930...... ...40.........50.........60.........70.........80.......
 
   64.....70.........80.. .......90.........100.........110........
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Query Sequence  AHDRFGGYAQSGLLAEITP. . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY
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Template Sequence  GNTWLPEFALLDTLEPMQPYVARSKIVDPADYFPGVWDTNLVDGTLYGVPWYVDTRLLFY
Template Known Secondary structure  GGGTT
B



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   88.90.........100.........110.........120.........130.........140.......
 
   119120.... .....130.........140... ......150.........160.........170
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Query Sequence  NKDLLP. . . . . NPPKTWEEIPALDKELKAK. . . GKSALMFNLQEPYFTWPLIAADGGYAF
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Template Sequence  RKDLLREAGYSQMPKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDRLL
Template Known Secondary structure  TT
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B
TTS

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   148.150.........160.........170.........180.........190.........200.......
 
   171........180.........190.........200......... 210.........220........
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Query Sequence  KYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADT. . DYSIAEAAFNKGETAMTIN
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Template Sequence  RDHDNY. . . . . GNFRGAGFRKALGFYDNMYQQGWAPKVSETQVSNVWYEFFNGYYAFYLS
Template Known Secondary structure  TTTT.....
TTSTTSS
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GGG
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   208.210... ......220.........230.........240.........250.........260..
 
   229230......... 240.........250.........260.........270.........280...
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Query Sequence  GPWAWSNIDTS. . . . . KVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLEN
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Template Sequence  GPWNVREFKLRQPPGMEGNWGTAPLPGPNG. LGAGIAGGSSLVIFKSSQHKDASWKLIE.
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   263......270.........280.........290.. .......300.........310.........320
 
   284.....290.........300....... ..310.........320.........330.........340..
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Query Sequence  YLLTDEGLEAVNKDKPLGAVALKS. YEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWY
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Template Sequence  YLSQPQVQARFHAIIGDLPPRRSTWKLPSLANDALAHAFGDQLERVKATPKVLEWERIVQ
Template Known Secondary structure  TS

B
SBST
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   321........330.........340.........350.........360.........370.........380
 
   343......350.........360.........370....
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Query Sequence  AVRTAVINAASGRQTVDAALAAAQTNAAAKVD
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Template Sequence  EMRLVTERVVRGGQSHDAAVQELDQRVDEILA
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   381........390.........400.........410..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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