Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.87%DateSun Sep 7 16:46:09 BST 2014
Rank104Aligned Residues285
% Identity11%Templatec3k6wA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:solute-binding protein ma_0280; PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans
Resolution2.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30. ........40.........50.........60... .
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKD. TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW. A
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Template Sequence  VLTVFHAG. SLSVPFEELEAEFEAQHPGVDVQREAAG. SAQSVRKITELGKKADVLASAD
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G.GG
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   42....... 50.........60.........70....... ..80.........90.........
 
   65....70.........80.. .......90.........100.........110.........120.
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Query Sequence  HDRFGGYAQSGLLAEITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  YALIPSLMVPEYADWYAAFARNQMILAYTNESKYGDEINTDNWYEILRRPDVRYGFSNPN
Template Known Secondary structure  TTTTTTT
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TTSTTTTS

TTTSTT


TT
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   100.........110.........120.........130.........140.........150.........
 
   122.......130.........140.........150.........160.........170.........180.
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Query Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  DDPAGYRSQMVTQLAESYYNDDMIYDDLMLANTGMTLTTEENGTALIHVPASEEISPNTS
Template Known Secondary structure  T
TT
TTTTTTSS

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TT
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   160.........170.........180.........190.........200.........210.........
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  KIMLRSMEVELSSALETG. . . . . . EIDYLYIYRSVAEQHGFEYVALPPAIDLSSLEYAD.
Template Known Secondary structure  TSSGGGSTT......S
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   220.........230....... ..240.........250.........260.........270..
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  NYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVA. LLLGETGQQIFIENGQPP
Template Known Secondary structure  TT
TTS






TT
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   273......280.........290.........300.........310... ......320.........330.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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