Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence27.44%DateSun Sep 7 16:46:09 BST 2014
Rank336Aligned Residues115
% Identity10%Templatec3b50A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac.
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40..... ....50.........60.........
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  SSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL. DFTFAESARFQ
Template Known Secondary structure  TSTTTS
TTTT

TS
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GGGGG
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   14.....20.........30.........40.........50.........60. ........70..
 
   70.........80. ........90.........100.........110.........120
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Query Sequence  GYAQSGLLAEIT. . . . . . . . . PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK
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Template Sequence  LFYPEAAVFALPYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSN
Template Known Secondary structure  GTSGGGGGGGSTTTS
SSS
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   73......80.........90.........100.........110.........120.........130..
 
   121........130...
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Query Sequence  DLLPNPPKTWEEI
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Template Sequence  . . . . RAINSIADM
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SGGGG
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   133......140.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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