Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence92.44%DateSun Sep 7 16:46:09 BST 2014
Rank131Aligned Residues264
% Identity13%Templated1pc3a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.16

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LAEVGKKFEK. DTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAE
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Template Sequence  FNLWGPAFHERYPNVTITAQGTGS. . GAGIAQAAAGTV. NIGASD. . . . . . . . . . . . . AY
Template Known Secondary structure  STT

B

..TTS
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   42.......50.........60..... ....70....... ..80... ..
 
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Query Sequence  ITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD. . . . . . . . . . . . . . . LLP
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Template Sequence  LSEGDMAAHK. . . . . . . . . . . . . GLMNIALAISAQQVNYNLPGVSEHLKLNGKVLAAMYQ
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   86...90..... ....100.........110.........120.........130..
 
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Query Sequence  NPPKTWEEIPALDKELKAKGKS. . . . . . ALMFNLQEPYFTWPLIAADGGYAFKYENGKYD
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Template Sequence  GTIKTWDDPQIAALNPGVNLPGTAVVPLHRSDGSGDTFLFTQYLSKQDPEGWGKSPGFGT
Template Known Secondary structure  TS

BTT
STT





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   133......140.........150.........160.........170.........180.........190..
 
   179180........ .190.........200.........210.........220....... ..230.
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Query Sequence  IKDVGVDNAG. . AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTI. . . NGPW. .
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Template Sequence  TVDFPAVPGALGENGNGGMVTGCAETPGCVAYIGISFLDQASQRGLGEAQLGNSSGNFLL
Template Known Secondary structure  S





TT


STTGGGTT


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   193......200.........210.........220.........230.........240.........250..
 
   232.......240.........250.........260.........270.... .....280
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Query Sequence  . . . . . . . . AWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNK. . . ELAKEF
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Template Sequence  PDAQSIQAAAAGFASKTPANQAISMIDGPAPDGYPIINYEYAIVNNRQKDAATAQTLQAF
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   253......260.........270.........280.........290.........300.........310..
 
   281........290.........300.........310....
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Query Sequence  LENYLLTDEGLEAVNKDKPLGAVALKSYEEELAK
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Template Sequence  LH. WAITDGNKASFLDQVHFQPLPPAVVKLSDAL
Template Known Secondary structure  .TTGGGST
B


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Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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