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Job Descriptionmulti-dom
Confidence99.32%DateSun Sep 7 16:46:09 BST 2014
Rank114Aligned Residues228
% Identity13%Templatec4jb7A_
PDB info PDB header:cell invasionChain: A: PDB Molecule:accessory colonization factor acfc; PDBTitle: 1.42 angstrom resolution crystal structure of accessory colonization2 factor acfc (acfc) in complex with d-aspartic acid
Resolution1.42 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFW
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Template Sequence  ADVNLYGPGGP. HVPLIKVAESFEKSQSKRVNITFGPQATWNDKAKKN. . . . . . ADILFG
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Query Sequence  AHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL
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Template Sequence  ASEHSALAIAEGHSERFSKFN. . . . . . . . . . . . . . . . . . . . . IHPVFXREAIILVKKG. N
Template Known Secondary structure  SSTTTTT

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   77..80.........90....... ..100.........110... .
 
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Query Sequence  PNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVG
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Template Sequence  PKNIKGXADLLKPGIGIVVNDGAGVSNTSGTAVWEDSVGRXKN. . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


SGGGGGSTT



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   115....120.........130.........140.........150.......
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  VDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNY
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Template Sequence  . . . . . . . . . VEKLQAFRSNIHVFAPNSGSARKAFVDGEDIDAWIT. . . WVDWAIANPTIG
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Query Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK
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Template Sequence  DXVRXE. . . . . . . DEYRIYRDFNVVLAKNPSSEAIDFFDYLTKSKDAEAIFQHYG
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Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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