Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.97%DateSun Sep 7 16:46:09 BST 2014
Rank98Aligned Residues271
% Identity17%Templated1y9ua_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.39

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40 .........50.........60.....
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEH. PDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  EVSLYTTREP. . KLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDI
Template Known Secondary structure  SS
G..GGT


SS
GGG



S
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   7..10...... ...20.........30.........40.........50.........60....
 
   66...70.........80.........90.........100.........110.........120.....
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Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
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Template Sequence  GNLIDLVNGGVTQKIQ. . . . . . SQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLD
Template Known Secondary structure  TT



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GGGB
GGGS
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   65....70.........80 .........90.........100.........110........
 
   126...130.........140.........150.........160.........170.........180.....
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Query Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
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Template Sequence  . SFRYGDLADPKWKGK. . . . . . VCIRSGQHPYNTALVAAM. . . . . . . . . . . . . . . . . . IA
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BGGGGG
GGGTT
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   119120.........130... ......140.........150. ..
 
   186...190.........200.........210.........220.........230.........240..
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Query Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN. . .
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Template Sequence  HDGAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDA
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BSS
S
S
TTS
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   154.....160.........170.........180.........190.........200.........210...
 
   243......250.........260.........270.........280.........290.........300
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Query Sequence  . . YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPL
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Template Sequence  RKWGDAIKVVRPTFAGGTHVNISGAAVAAHAPNKANAVKLLE. YLVSEPAQTLYAQANYE
Template Known Secondary structure  T

B



B
TT
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   214.....220.........230.........240.........250..... ....260.........270..
 
   301........310.
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Query Sequence  GAVALKSYEEE
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Template Sequence  YPVRAGVKLDA
Template Known Secondary structure  SSTT



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   277..280.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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