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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank83Aligned Residues315
% Identity14%Templatec4i1dB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter substrate-binding protein; PDBTitle: the crystal structure of an abc transporter substrate-binding protein2 from bradyrhizobium japonicum usda 110
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20... ......30.........40.........50........ .60..
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Query Sequence  EGKLVIWINGDKGYNGLAE. VGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGP. DIIF
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Template Sequence  NAQITFVSQGGAYQAAQTVAILDPSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVD
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   42.......50.........60.........70.........80.........90.........100.
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  WAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL
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Template Sequence  TPTGYCLRGGEQGLIEKLDF. . . . . . SKIPNAAAXPEAYRSPYSVSYEFYSSVLAYSQKT
Template Known Secondary structure  TTSB



G......GG
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   102.......110.........120. ........130.........140.........150.....
 
   123... ...130.........140.........150.........160.........170.........180.
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Query Sequence  LPNP. PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  FPKDAPNSWVDFWDVKKF. . . . . PGRRALRNHPIATLEAALXADGVAPDK. . . . . . . . . .
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   156...160.........170... ......180.........190.........200
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  . . LYPLDVDRAFKKLEEIKPHITV. WWTSGAQSAQLLNDGEVDXEXAWNGRVSAVAKEGA
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   201........210.........220.. .......230.........240.........250.......
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  KVSFTY. . . . . . . . NQGILQSTSLCILKGAPNLETAVKFLN. EAVDPVHQANLPLHIDYG
Template Known Secondary structure  S........BTT
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   258.260... ......270.........280.........290 .........300........
 
   302.......310.........320.........330.........340.........350...
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Query Sequence  AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS
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Template Sequence  PGNPKAFETNV. IKPERAAQLPSEPANAAKQALXSYAWWSSPAGEAAEKRWA
Template Known Secondary structure  SSGGGGGSS
.S
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   309310......... 320.........330.........340.........350.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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