Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence91.74%DateSun Sep 7 16:46:09 BST 2014
Rank134Aligned Residues194
% Identity14%Templated1usga_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.53

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   359360.........370.........380 .........390.........400.........410..
Predicted Secondary structure 









......










Query SS confidence 





















. . . . . .































Query Sequence  DAALAAAQTNAAAKVDILGVDF. . . . . . DNTTMLQMVENIKTFFANQSTNNLFIVTANPE
Query Conservation 



  

  
 
 
 


   ......
  
                     
   
  
Alig confidence 





















......


















..










Template Conservation    
   
   

  


 
  
 
   
       
      
    ..    

     
Template Sequence  FNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDG. . IKYVIGHLCSS
Template Known Secondary structure  TTTBTTB

TT
TT..



SS
Template Predicted Secondary structure 











..





Template SS confidence 



























































   23......30.........40.........50.........60......... 70.........80
 
   413......420.........430.........440.........450......... 460.........470
Predicted Secondary structure 
















..
Query SS confidence 














































. .










Query Sequence  IVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIE. . LMDECLKIAHV
Query Conservation                   
     

  
             

 
 
..
   
      
Alig confidence 

......






































..










Template Conservation    ......                                                    
Template Sequence  ST. . . . . . QPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILE
Template Known Secondary structure  ......T





GGGGSS

SS
S

GGG
Template Predicted Secondary structure  ......






















Template SS confidence 



























































   81. .......90.........100.........110.........120.........130....
 
   471. .......480.........490...... ...500... ......510.........520....
Predicted Secondary structure 

..





..


..










Query SS confidence 

. .























. .






. .




















Query Sequence  NH. . QKVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKLFKP
Query Conservation    ..     

            
    ..
      ..  
            
     
Alig confidence 

..























..






..




















Template Conservation        
 
                      
  
                   
     
Template Sequence  TVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENI
Template Known Secondary structure  TT

SS
SSTT



TT



TT
Template Predicted Secondary structure 





















Template SS confidence 



























































   135....140.........150.........160.........170.........180.........190....
 
   525....530.........540.........550.........560
Predicted Secondary structure 










Query SS confidence 



































Query Sequence  DYIFVGMGFPKQEEWIMTHENQFESTVMMGVGGSLE
Query Conservation      
  
 
 

         
       

   
Alig confidence 



































Template Conservation    
            
      
             
Template Sequence  DFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGN
Template Known Secondary structure 
S
TT



GGG

Template Predicted Secondary structure 












Template SS confidence 



































   195....200.........210.........220.........230
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D