Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank23Aligned Residues368
% Identity99%Templatec4ifpC_
PDB info PDB header:immune systemChain: C: PDB Molecule:maltose-binding periplasmic protein, nacht, lrr and pyd PDBTitle: x-ray crystal structure of human nlrp1 card domain
Resolution1.99 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.
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Query Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
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Template Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
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TTTT
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   2.......10.........20.........30.........40.........50.........60.
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  FWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
Template Known Secondary structure  GGGTT
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TTB
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   62.......70.........80.........90.........100.........110.........120.
 
   122.......130.........140.........150.........160.........170.........180.
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Query Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKD
Template Known Secondary structure  T
SS

SBSTTTTT




SSGGGTTT
TT
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   122.......130.........140.........150.........160.........170.........180.
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAV
Template Known Secondary structure  SSSTTSS
TT

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GGGTT
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   182.......190.........200.........210.........220.........230.........240.
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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BBTTB



BTT
S
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S
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   242.......250.........260.........270.........280.........290.........300.
 
   302.......310.........320.........330.........340.........350.........360.
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Query Sequence  AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAA
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Template Sequence  AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAA
Template Known Secondary structure  SBTT
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   302.......310.........320.........330.........340.........350.........360.
 
   362.......
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Query Sequence  LAAAQTNA
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Template Sequence  LAAAQTNA
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   362.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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