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Job Descriptionmulti-dom
Confidence24.75%DateSun Sep 7 16:46:09 BST 2014
Rank357Aligned Residues286
% Identity13%Templatec2qpqC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis
Resolution1.92 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10 .........20.........30.........40.........50.........
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Query Sequence  IEEGKLVI. WINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPD. .
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Template Sequence  NKPLDIIVTFPPGGGTDMLARLIGNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGY
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   7..10.........20.........30.........40.........50.........60......
 
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Query Sequence  IIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYN
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Template Sequence  SLLMVNSSFAVNPGVFRNLPFDP. . . . . . . . . . . . . . . . . KKDFAAVINVAYVPSVFVVP
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   67..70.........80......... 90.........100.........
 
   120.........130.........140.........150.........160.........170.........
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Query Sequence  KDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDI
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Template Sequence  AG. . . SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHMV. . . . . . . .
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Query Sequence  KDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGET. AMTINGPWAWSNIDT
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Template Sequence  . HVPYKG. . . . . CGPALNDVLGSQIGLAVVTASSAIPFIKAGKLQALAVTSKERSALLPE
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   159160.... .....170.........180.........190.........200.........210..
 
   239240.........250.. .......260.........270........ .280.........290....
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Query Sequence  SKVNYGVTVLPTFK. . GQPSKPFVGVLSAGINAASPNKELAK. . EFLENYLLTDEGLEAV
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Template Sequence  . . . . . . . . . VPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKL
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   213......220.........230.........240.........250.........260...
 
   295....300.........310.........320.........330..
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Query Sequence  NKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMP
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Template Sequence  AD. LGYSTASDGPEVFQKMVETDIDRFSALTKQIGLKV
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   264. ....270.........280.........290.........300
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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