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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank49Aligned Residues362
% Identity23%Templatec3k02A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:acarbose/maltose binding protein gach; PDBTitle: crystal structures of the gach receptor of streptomyces glaucescens2 gla.o in the unliganded form and in complex with acarbose and an3 acarbose homolog. comparison with acarbose-loaded maltose binding4 protein of salmonella typhimurium.
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10........ .20.........30. ........ 40.........50...... ...60
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Query Sequence  GKLVIWINGDKGY. NGLAEVGKKFEKD. TGIKVTVE. . HPDKLEEKFPQVAATGD. GPDI
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Template Sequence  GTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDV
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TTT
TT

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   20.........30.........40.........50.........60.........70.........
 
   61........70.........80.. .......90.........100.........110........
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Query Sequence  IFWAHDRFGGYAQSGLLAEITP. . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY
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Template Sequence  MRTEVAWVADFASIGYLAPLDGTPALDDGSDHLPQAAASTRYEGKTYAVPQVIDTLALFY
Template Known Secondary structure  TTTT
B


TTSTT
SSGGGB
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   80.........90.........100.........110.........120.........130.........
 
   119120.... .....130.........140.. .......150.........160.........170...
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Query Sequence  NKDLLP. . . . NPPKTWEEIPALDKELKA. KGKSALMFNLQEPYFTWPLIAADGGYAFKYE
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Template Sequence  NKELLTKAGVEVPGSVAELKTAAAEITEKTGATGLYLRGDDPYWFLPYLYGEGGDLVDEK
Template Known Secondary structure  T



SBS



S
GGGGTT

STT
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   140.........150.........160.........170.........180.........190.........
 
   174.....180.........190.........200........ .210.........220.........230.
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Query Sequence  NGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . TDYSIAEAAFNKGETAMTINGPW
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Template Sequence  NKT. . . . . VTVDDEAGVRAYRVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMVNGPW
Template Known Secondary structure  TT.....
TTSTTS

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   200.. .......210.........220.........230.........240.........250....
 
   232....... 240.........250.........260.........270.........280......
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Query Sequence  AWSNIDTS. . . . . KVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLL
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Template Sequence  AIEDVKAGARFKDAGNLGVAPVPAGSAG. QGSPQGGWNLSVYAGSKNLDASYAFVK. YMS
Template Known Secondary structure  GTSGGGSSGGG


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   255....260.........270.........280.. .......290.........300......... 310..
 
   287..290.........300.........310 .........320.........330.........340.....
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Query Sequence  TDEGLEAVNKDKPLGAVALKSYEE. ELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVR
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Template Sequence  SAKVQQQTTEKLSLLPTRTSVYEVPSVADNEMVKFFKPAVDKAVERPWIAEGNALFEPIR
Template Known Secondary structure  S

SBGGGGGST

B




TTSGGG
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   313......320.........330.........340.........350.........360.........370..
 
   346...350.........360.........370....
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Query Sequence  TAVINAASGRQTVDAALAAAQTNAAAKVD
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Template Sequence  LQMANVLSGETSPDEAAANTGDAYRKLLK
Template Known Secondary structure  TSS

T
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   373......380.........390.........400.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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