Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.98%DateSun Sep 7 16:46:09 BST 2014
Rank93Aligned Residues269
% Identity18%Templatec4eloD_
PDB info PDB header:metal transportChain: D: PDB Molecule:iron abc transporter, periplasmic iron-binding protein; PDBTitle: ferric binding protein in apo form 1
Resolution1.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30......... 40.........50.........60....
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFWA
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Template Sequence  TLTIYSGRGQ. . SLVEPLVKQFEAETGIRVQVRYSTDAQILAALQEEGSRSPADLFWANT
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   23......30.. .......40.........50.........60.........70.........80
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  AGALGQASAKGLLRPLGETLLEKPIAF. . . . . . . . VPASRTWVPVTVRLRVLAYNPDRIK
Template Known Secondary structure  TT
B



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   81........90.........100....... ..110.........120.........130..
 
   125....130.........140.........150.........160.........170.........180..
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Query Sequence  . . NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDV
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Template Sequence  AEELPESLLDLPRFAREKGLVGRVGWTPTYSSFQDMVAGMIALYG. . . . . . . . . . . . . . .
Template Known Secondary structure  GGGS
SSGGGT
TT

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   133......140.........150.........160.........170.......
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  GVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN
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Template Sequence  . . . . . . EEKTREWLLAMK. ALAPKAYPSNPAMLDAIRAGEVDLGSTNHYYVVRFRRAGYR
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   178.180......... 190.........200.........210.........220.........230
 
   243......250.........260.........270.........280.........290.........300..
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Query Sequence  YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGA
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Template Sequence  LGMHHFR. . . DGDAGNLALVTGAGLLKTSKNLAAATRFLT. YLLSPQAQQYFVGNIGEYP
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S...TT
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   231...... ..240.........250.........260....... ..270.........280......
 
   303......310.
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Query Sequence  VALKSYEEE
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Template Conservation      
   
Template Sequence  LVKGVALDP
Template Known Secondary structure  SSSSS


T
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   287..290.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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