Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence98.49%DateSun Sep 7 16:46:09 BST 2014
Rank122Aligned Residues237
% Identity10%Templatec4ecfA_
PDB info PDB header:phosphate-binding proteinChain: A: PDB Molecule:abc-type phosphate transport system, periplasmic component; PDBTitle: crystal structure of an abc-type phosphate transport system,2 periplasmic component (lvis_0633) from lactobacillus brevis atcc 3673 at 1.55 a resolution
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30. ........40.........50.........60.....
Predicted Secondary structure 





.












Query SS confidence 
























.

































Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKD. TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
Query Conservation   
 

         
      


 . 



     

   

  
  

  


     
Alig confidence 







.















.











..



















Template Conservation 

 
  
 .
       
   
    
 
 
      
..      
  
  
       
Template Sequence  SITAVGST. ALQPLVEAAGEQYTGEHLGTFINVQGGGT. . GTGLSQIQEGAVQIGNSDLF
Template Known Secondary structure 
T.TTSTT
..TSSSSS
Template Predicted Secondary structure 
.




..







Template SS confidence 



























































   34.....40. ........50.........60.........70 .........80.........90
 
   66...70.........80.........90.........100.........110.........120.
Predicted Secondary structure 












....
Query SS confidence 























































. . . .
Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD. . . .
Query Conservation           
 
 

       
            


 



       
 



....
Alig confidence 














...........................













....
Template Conservation             
   ...........................                  
Template Sequence  AGEQKGINARQLVDH. . . . . . . . . . . . . . . . . . . . . . . . . . . RVAVVGITPIVNKKVGVK
Template Known Secondary structure  GGGSTT

GGG

...........................
TTSS
S
Template Predicted Secondary structure 





...........................






Template SS confidence 



























































   91........100..... ....110.........120...
 
   122.......130.........140.........150.........160.........170..
Predicted Secondary structure  .........















Query SS confidence  . . . . . . . . .


















































Query Sequence  . . . . . . . . . LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKY
Query Conservation  .........

 


 




   




  
                 
   

     
Alig confidence  .........











......






























..
Template Conservation                       ......               
 
             ..
Template Sequence  NLSTNQLIKIFTGQITNWKEV. . . . . . GGADQSIVLINRAQGSGTRATFEQFGLANHR. .
Template Known Secondary structure 
TTS

BGGGG......TS
S
B

TT
TSTT

..
Template Predicted Secondary structure 












......
















..
Template SS confidence 



























































   124.....130.........140.... .....150.........160.........170.....
 
   173......180.........190.........200.........210.........220.........230..
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  ENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWA
Query Conservation    
  
     
 

   


     
   
              
  

 

 
 
 
 
Alig confidence  .............................






























Template Conservation  .............................                
       
      
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SKTAQEQDSSGXVRSIVATTPGAISYVAFSY
Template Known Secondary structure  .............................

S
SSSTTGGG
Template Predicted Secondary structure  .............................












Template SS confidence 



























































   176...180.........190.........200......
 
   233......240.........250.........260.........270.........280.........290..
Predicted Secondary structure 






















Query SS confidence 



























































Query Sequence  WSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLE
Query Conservation             


 

   
       
     
 
 






  

   
 
 
   
Alig confidence 





























..

















.








Template Conservation                          


   ..  
         
  

 .



 


 
Template Sequence  VNKTVQALSLNHVAPTEVNVTTNDWRIWSY. . EHLYTKGHPTGLTKAFIT. YVQSPAIQN
Template Known Secondary structure 

TTS
TTB


TTSS

..SS

.ST
Template Predicted Secondary structure 


















..




.

Template SS confidence 



























































   207..210.........220.........230...... ...240.........250.... .....260...
 
   293......300.........310...
Predicted Secondary structure 










Query SS confidence 




















Query Sequence  AVNKDKPLGAVALKSYEEELA
Query Conservation           
    
      
Alig confidence 




















Template Conservation   
    

 
           
Template Sequence  TLVRQLGYLSPDQXLVERDAN
Template Known Secondary structure  TTT
B
GGG
S
TT
Template Predicted Secondary structure 







Template SS confidence 




















   264.....270.........280....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D