Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence41.99%DateSun Sep 7 16:46:09 BST 2014
Rank257Aligned Residues155
% Identity13%Templatec4p47A_
PDB info PDB header:solute-binding proteinChain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ochrobactrum anthropi (oant_4429), target efi-510151, c-termius bound3 in ligand binding pocket
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.. .......40.... .....50.........60......
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Query Sequence  WINGDKGYNGLAEVGKKFEKDT. . GIKVTVEHPDKL. . EEKFPQVAATGDGPDIIFWAHD
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Template Sequence  NSKGHPQVTGMEKFAELVKEKSGGQINVKLFPGGVLGSDPQTLSGLQGGVV. EMTVMNAG
Template Known Secondary structure  S
TTSTTTS
TTTT

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GG
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   38.40.........50.........60.........70.........80........ .90......
 
   67..70.........80.. .......90.........100.........110........
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Query Sequence  RFGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY
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Template Sequence  ILSSTVKAFEAVDLPFLFNSGEEADKVMDGPFGTNLMKRLPDTGLIGLAYWELGFRNLTN
Template Known Secondary structure  GGGGTSGGGGGGGSTT

SSSTTSGGGT
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   97..100.........110.........120.........130.........140.........150......
 
   119120.........130.........140.........150.........160.........170........
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Query Sequence  NKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYD
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Template Sequence  NR. . . . HPVAKLEDI. . . . . . . . . . . . AGLKIRTLQSPVPVALFNALGANAVP. . . . . . .
Template Known Secondary structure  SS....S


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   157. .160....... ..170.........180.........190...
 
   179180.........190....
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Query Sequence  IKDVGVDNAGAKAGLT
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Template Sequence  . . . . . LPYTELYTALE
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   194.....200....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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