Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence40.35%DateSun Sep 7 16:46:09 BST 2014
Rank269Aligned Residues115
% Identity14%Templatec4mcoC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:trap dicarboxylate transporter-dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodoferax ferrireducens (rfer_1840), target efi-510211, with bound3 malonate
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30... ......40.... .....50.........60........
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Query Sequence  NGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGDGPDIIFWAHDRF
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Template Sequence  EGDFRDRLVRNFAAEVEKRSKGAMKFEIYPGSSLMKTNAQFSSMRKGAL. DMALIPLSYA
Template Known Secondary structure  SS
TTTSS

TTSSS
GGGTS
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GGGG
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   43......50.........60.........70.........80.........90. ........100.
 
   6970.........80.. .......90.........100.........110.........120
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Query Sequence  GGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK
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Template Sequence  GGEVPELNIGLMPGLVVSYEQAYSWKTKPVGIELTRVLQEKGIVLISWIWQAGGVASRGK
Template Known Secondary structure  TTT
GGGGGGS
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STTTSTT

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   102.......110.........120.........130.........140.........150.........160.
 
   121........130...
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Query Sequence  DLLPNPPKTWEEI
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Template Sequence  . . . . . PVVEPEDA
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SGGGG
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   162.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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