Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence44.53%DateSun Sep 7 16:46:09 BST 2014
Rank251Aligned Residues117
% Identity11%Templatec4mx6A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:trap-type c4-dicarboxylate:h+ symport system substrate- PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 shewanella oneidensis (so_3134), target efi-510275, with bound3 succinate
Resolution1.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30... ......40.... .....50.........60......
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Query Sequence  WINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGDGPDIIFWAHD
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Template Sequence  VAENTPKGQMALKFKELVEQRLPGEYTVSVFPNSQLFGDNNELAALLLNDV. QFVAPSLS
Template Known Secondary structure  S
SSSSTTT
TTSS

TTTTTS
.SBB

BGG
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   45....50.........60.........70.........80.........90..... ....100...
 
   67..70.........80.. .......90.........100.........110........
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Query Sequence  RFGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY
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Template Sequence  KFERYTKRLQVFDLPFLFNDMDAVNRFQQGEAGQALLNSMSRKGIVGLGYLHNGMKQFTA
Template Known Secondary structure  G
TTT
SGGGGGGSTT

SSSTTTTGGGT
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   104.....110.........120.........130.........140.........150.........160...
 
   119120.........130...
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Query Sequence  NKDLLPNPPKTWEEI
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Template Sequence  NT. . . . . PLKQPSDA
Template Known Secondary structure  SS.....

SSGGGG
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   164. ....170...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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