Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence98.67%DateSun Sep 7 16:46:09 BST 2014
Rank120Aligned Residues234
% Identity12%Templated1twya_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.65

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30. ........40.........50.........60.....
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKD. TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  EITI. SGSTSVARIXDVLAEKYNQQHPETYVAVQGVGS. . TAGISLLKKGV. ADIAXTS.
Template Known Secondary structure  .

TT
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   2930.. .......40.........50.........60..... ....70...... ...80...
 
   66...70.........80.........90.........100.........110.........120.
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Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD. . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . RYLTESEAQNTLHTFTLAFDGLAIVVNQANPVT
Template Known Secondary structure  ...........................S


TTT

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   84.....90.........100.........110......
 
   122.......130.........140.........150.........160.........170..
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Query Sequence  . . . . . . . . . LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKY
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Template Sequence  NLTREQLYGIYKGQITNWKQVG. . . . . . GNDQKIAVVTREASSGTRYSFESLXGLTKTVK
Template Known Secondary structure 
TS

BGGGGT......S
S
B

TT
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   117..120.........130........ .140.........150.........160.........170
 
   173......180.........190.........200.........210.........220.........230..
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Query Sequence  ENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWA
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Template Sequence  DREVSDVA. . . . . . . . . . . . . . . . . . . . . . PTALVVNSNSXXKTLVNHNTQAVGFISIGS
Template Known Secondary structure  T
S
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TTGGG
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   171....... .180.........190.........200........
 
   233......240.........250.........260.........270.........280.........290..
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Query Sequence  WSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLE
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Template Sequence  VDKSVKAIQFEKADPTSDNIAKHTYQLSR. PFLILHYSDNADEQTKEFIA. FLKSESAKK
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   209210.........220.........230....... ..240.........250....... ..260......
 
   293......300..
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Query Sequence  AVNKDKPLGA
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Template Conservation 
    

  
Template Sequence  LIVEYGYIXP
Template Known Secondary structure  TT
B

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   267..270......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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