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Job Descriptionmulti-dom
Confidence70.82%DateSun Sep 7 16:46:09 BST 2014
Rank167Aligned Residues195
% Identity12%Templatec4m88A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: crystal structure of extracellular ligand-binding receptor from2 verminephrobacter eiseniae ef01-2
Resolution1.76 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380... ......390.........400.........410.
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Query Sequence  VDAALAAAQTNAAAKVDILGVDFDNT. . . . . . TMLQMVENIKTFFANQSTNNLFIVTANP
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Template Sequence  LNQGIKAYLAQANKAGGIRGQKLTLFEADDRFSGEGFAEQFPKAXEKKPL. . . ALISPXG
Template Known Secondary structure  TT
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   21........30.........40.........50.........60.........70 .......
 
   412.......420.........430.........440.........450....... ..460.........
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Query Sequence  EIVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPG. . IELMDECLKIAH
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Template Sequence  SAAIKR. . . XLDDKLLDTAPVVVVNGVPGAESLRTPGHPKFFHVRAGDKQEIEEIVSHAQ
Template Known Secondary structure  ...TTTTSS
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   78.80... ......90.........100.........110.........120.........130....
 
   470... ......480.........490...... ...500... ......510.........520..
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Query Sequence  VNHQ. KVFLLGATNEVVEAAQYALQQRY. . . . . PNISFAH. HHGYIDLEDETVVKRIKLF
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Template Sequence  XLGXSKLATLYQDLPTGTSGXAVVQEAVKTVPGGKIELNGVKSGPDAAALAAAARQIAAL
Template Known Secondary structure  TT
SSST
TT



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   135....140.........150.........160.........170.........180.........190....
 
   523......530.........540.........550........
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Query Sequence  KPDYIFVGMGFPKQEEWIMTHENQFESTVMMGVGGS
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Template Sequence  GAQGVLVIGPPPFIVAGIAALRKADVTQPLFVLSYV
Template Known Secondary structure  T
SSSTT

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TT
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   195....200.........210.........220.........230
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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