Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence55.59%DateSun Sep 7 16:46:09 BST 2014
Rank216Aligned Residues232
% Identity13%Templatec4kq9A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:ribose abc transporter, substrate binding protein; PDBTitle: crystal structure of periplasmic ribose abc transporter from2 conexibacter woesei dsm 14684
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380.........390.........400.........410.......
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Query Sequence  VDAALAAAQTNAAAKVDILGVDFDNTTMLQMVENIKTFFANQSTNNLFIVTANPEIVNYA
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Template Sequence  IGEGAKAQATVRRLDFDISTSEIDPGKQIDSIDNA. . . . VAQQPDGLIVSPIDGSA. . . .
Template Known Secondary structure  TT

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   66...70.........80.........90.........100 .........110.......
 
   418.420.........430.........440.........450.........460.........470.......
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Query Sequence  TTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHVNHQKVFL
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Template Sequence  . LVPTIKGAVEDGVPVILLADGLSEDVGQLSFVGSDFAEIGRLKATYIADRLGDGGTVAX
Template Known Secondary structure  .TTT

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   118.120.........130.........140.........150.........160.........170......
 
   478.480.. .......490.........500.........510.. .......520.........
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Query Sequence  LGATN. . . . . . EVVEAAQYALQQRYPNISFAHHHGYIDLED. . ETVVKRIKLFKPDYIFV
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Template Sequence  VNGTRGXSFVEEQGEAAREVFEERGIEIVDDVYTKAITPDEGLTATQNILTRHSDVGAIY
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STT
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   177..180.........190.........200.........210.........220.........230......
 
   530.........540.........550 .........560.. .......570........
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Query Sequence  GMGFPKQEEWIMTHENQFEST. . . VMMGVGGSLEVF. . . . . . . . AGAKKRAPYIFRKLNI
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Template Sequence  YSGDDGALGGIRAIAARNIAPGKIXVVGTDANEGALAAVRAGTXALTVSQCAYEQGGIAI
Template Known Secondary structure  SSTT

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   237..240.........250.........260.........270.........280.........290......
 
   579580.........590........
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Query Sequence  EWIYRALIDWKRIGRLKSIP
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Template Sequence  DVXADYLETGKKPDRRIFTP
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   297..300.........310......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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