Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank73Aligned Residues369
% Identity17%Templated1j1na_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10........ .20.........30......... 40.........50.......
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Query Sequence  IEEGKLVIWINGDKGY. . NGLAEVGKKFEKDTGIKVTVE. . . HPDKLEEKFPQVAATGDG
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Template Sequence  DKPLTLKIHMHFRDKWVWDENWPVAKESFRLTNVKLQSVANKAATNSQEQFNLMMASGDL
Template Known Secondary structure  SS
TTT

TTSS
S
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   8.10.........20.........30.........40.........50.........60.......
 
   58.60.... .....70.........80...... ...90.........100.......
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Query Sequence  PDIIFWA. . HDRFGGYAQSGLLAEITPDKAF. . . . . . . . QDKLYPFTWDAVRYNGKLIAY
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Template Sequence  PDVVGGDNLKDKFIQYGQEGAFVPLNKLIDQYAPHIKAFFKSHPEVERAIKAPDGNIYFI
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SSS
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   68.70.........80.........90.........100.........110.........120.......
 
   108.110... ......120...... ...130.........140..... ....150....
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Query Sequence  PIAVEA. . . LSLIYNKDLLPNP. . . . PKTWEEIPALDKELKAKGK. . . . . . SALMFNLQE
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Template Sequence  PYVPDGVVARGYFIREDWLKKLNLKPPQNIDELYTVLKAFKEKDPNGNGKADEVPFIDRH
Template Known Secondary structure 


S

TT




BS
TT
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SS
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   128.130.........140.........150.........160.........170.........180.......
 
   155....160.........170.........180. ........190.........200........
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Query Sequence  PYFTWPLIAADGGYAFKYENGKYDIKD. . . . . VGVDNAGAKAGLTFLVDLIKNKHMNAD.
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Template Sequence  PDEVFRLVNFWGARSSGSDNYMDFYIDNGRVKHPWAETAFRDGMKHVAQWYKEGLIDKEI
Template Known Secondary structure  TTGGGGGT

S
SSSSTT

TT
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   188.190.........200.........210.........220.........230.........240.......
 
   209210.........220.........230...... ...240.........250......
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Query Sequence  . . TDYSIAEAAFNKGETAMTINGPWAWSNI. . . . DTSKVNYGVTVLPTFKGQPS. . . . . .
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Template Sequence  FTRKAKAREQMFGGNLGGFTHDWFASTMTFNEGLAKTVPGFKLIPIAPPTNSKGQRWEED
Template Known Secondary structure  TT
GGGTT
TTTTTSTT




B
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   248.250.........260.........270.........280.........290.........300.......
 
   257..260.........270.........280.........290.....
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Query Sequence  . KPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVN. . . . . . . . . . . . . . . . . . . .
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Template Sequence  SRQKVRPDGWAITVKNKNPVETIKFFD. FYFSRPGRDISNFGVPGVTYDIKNGKAVFKDS
Template Known Secondary structure 


SS
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BTT
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   308.310.........320.........330.... .....340.........350.........360......
 
   296...300.........310.........320.... .....330......
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Query Sequence  . . . . . . . . . . . . . . . KDKPLGAVALKSYEEELAKDPRIAATMEN. AQKGEIMPNIPQ. . .
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Template Conservation                                                              
Template Sequence  VLKSPQPVNNQLYDMGAQIPIGFWQDYDYERQWTTPEAQAGIDMYVKGKYVMPGFEGVNM
Template Known Secondary structure 
SS
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TT

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   367..370.........380.........390.........400.........410.........420......
 
   337..340.........350.........360.........370..
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Query Sequence  . . . . . . . . . . . MSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAK
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Template Conservation                
           
 
  
 
   
        
Template Sequence  TREERAIYDKYWADVRTYMYEMGQAWVMGTKDVDKTWDEYQRQLKLR
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TSS
T
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   427..430.........440.........450.........460.........470...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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