Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence38.13%DateSun Sep 7 16:46:09 BST 2014
Rank279Aligned Residues156
% Identity12%Templatec3gyyC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:periplasmic substrate binding protein; PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60........
Predicted Secondary structure 



















Query SS confidence 



























































Query Sequence  VIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRF
Query Conservation   

         
      


  



     

   

  
  

  


        
Alig confidence 
















































.









Template Conservation     
           

  
 
 
 
 
 
   
 

 
   

  
 
.
         
Template Sequence  HEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELSDDIMEQTQNGIL. QFVNQSPGFT
Template Known Secondary structure 
SS
TTSSS

TT


TTTTS
.S
GGG
Template Predicted Secondary structure 
















.


Template SS confidence 



























































   7..10.........20.........30.........40.........50..... ....60.....
 
   6970.........80......... 90.........100.........110.......
Predicted Secondary structure 






...........




Query SS confidence 




















. . . . . . . . . . .



























Query Sequence  GGYAQSGLLAEITPDKAFQDK. . . . . . . . . . . LYPFTWDAVRYNGKLIAYPIAVEALSLI
Query Conservation        
 
 

       
 ...........           


 



       
 
Alig confidence 




















...........



























Template Conservation      
   
  


                              

  
           
Template Sequence  GSLIPSAQIFFIPYLMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT
Template Known Secondary structure  TTTSGGGGGGGSTTSS
SS
TTTT
Template Predicted Secondary structure 


















Template SS confidence 



























































   68.70.........80.........90.........100.........110.........120.......
 
   118.120.........130.........140.........150.........160.........170.......
Predicted Secondary structure 




















Query SS confidence 



























































Query Sequence  YNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKY
Query Conservation 





 


 




   




  
                 
   

       
  
Alig confidence 


.....







............

























......
Template Conservation     .....

 
  

............

 


             


 

 ......
Template Sequence  ADE. . . . . PITSPEDF. . . . . . . . . . . . DNKKIRTMTNPLLAETYKAFGATPTP. . . . . .
Template Known Secondary structure  SS.....


SGGGS............TT


S
TT


......
Template Predicted Secondary structure 

.....



............










......
Template SS confidence 



























































   128.130 ........ .140.........150.........160....
 
   178.180.........190....
Predicted Secondary structure 








Query SS confidence 
















Query Sequence  DIKDVGVDNAGAKAGLT
Query Conservation 
     
 

   


 
Alig confidence  ......










Template Conservation  ......
   

  


Template Sequence  . . . . . . LPWGEVYGGLQ
Template Known Secondary structure  ......

Template Predicted Secondary structure  ......

Template SS confidence 
















   165....170.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D