Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank39Aligned Residues367
% Identity98%Templatec1svxB_
PDB info PDB header:de novo protein/sugar binding proteinChain: B: PDB Molecule:maltose-binding periplasmic protein; PDBTitle: crystal structure of a designed selected ankyrin repeat2 protein in complex with the maltose binding protein
Resolution2.24 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
Predicted Secondary structure 


















Query SS confidence 



























































Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
Query Conservation 
 
 

         
      


  



     

   

  
  

  


     
Alig confidence 



























































Template Conservation 
 



                


   
 
           
     

  


     
Template Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
Template Known Secondary structure 


TTS




TTTTTT


S
Template Predicted Secondary structure 

















Template SS confidence 



























































   5....10.........20.........30.........40.........50.........60....
 
   66...70.........80.........90.........100.........110.........120.....
Predicted Secondary structure 













Query SS confidence 



























































Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
Query Conservation           
 
 

       
            


 



       
 





 
Alig confidence 



























































Template Conservation           
 
  
                    

  
  
         

      
Template Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
Template Known Secondary structure  TT
B





TTB
TTSBSSS
B
S

TTT
SS
Template Predicted Secondary structure 





















Template SS confidence 



























































   65....70.........80.........90.........100.........110.........120....
 
   126...130.........140.........150.........160.........170.........180.....
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
Query Conservation 

 




   




  
                 
   

       
  
     
 
Alig confidence 



























































Template Conservation   
 
 

       
                                             
Template Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
Template Known Secondary structure 

SBGGGTTT




SSTT
TTSS
Template Predicted Secondary structure 































Template SS confidence 



























































   125....130.........140.........150.........160.........170.........180....
 
   186...190.........200.........210.........220.........230.........240.....
Predicted Secondary structure 



















Query SS confidence 



























































Query Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV
Query Conservation 

   


     
   
              
  

 

 
 
 
            

Alig confidence 



























































Template Conservation        

     
   
              
  
  
                     
Template Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV
Template Known Secondary structure  STTSS
TT

TT

GGGT

Template Predicted Secondary structure 





















Template SS confidence 



























































   185....190.........200.........210.........220.........230.........240....
 
   246...250.........260.........270.........280.........290.........300.....
Predicted Secondary structure 


























Query SS confidence 



























































Query Sequence  TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL
Query Conservation 
 

   
       
     
 
 






  

   
 
 
            
   
Alig confidence 



























































Template Conservation     
                 
   
   
 
  

                        
Template Sequence  TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL
Template Known Secondary structure 


TT


BTT
S
TTSSS


SB
Template Predicted Secondary structure 




























Template SS confidence 



























































   245....250.........260.........270.........280.........290.........300....
 
   306...310.........320.........330.........340.........350.........360.....
Predicted Secondary structure 




















Query SS confidence 



























































Query Sequence  KSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAA
Query Conservation   
       

      
    
   
 

    
   
  

  
  
  
 



  
Alig confidence 



























































Template Conservation                            
                     
      

   
Template Sequence  KSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDA
Template Known Secondary structure  TTSS


STTTTSS
Template Predicted Secondary structure 















Template SS confidence 



























































   305....310.........320.........330.........340.........350.........360....
 
   366...370..
Predicted Secondary structure 




Query SS confidence 






Query Sequence  QTNAAAK
Query Conservation 
  
 
 
Alig confidence 






Template Conservation 
  
 
 
Template Sequence  QTGSGGT
Template Known Secondary structure  TT

Template Predicted Secondary structure 


Template SS confidence 






   365....370.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D