Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank81Aligned Residues313
% Identity17%Templated1pota_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.... .....60...
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Query Sequence  EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT. GDGPDIIFW
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Template Sequence  NNTLYFYNWTEYVP. . . PGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVP
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SSSS
...TT
S
TT
SSS
SSBB

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   26...30......... 40.........50.........60.........70.........80..
 
   64.....70.........80.. .......90.........100.........110.........120..
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Query Sequence  AHDRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL
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Template Sequence  STYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDA
Template Known Secondary structure  BGGGT
B



TTS
TTGGGB
GGGS

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TTT
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   83......90.........100.........110.........120.........130.........140..
 
   123... ...130.........140.........150.........160.........170.........180.
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Query Sequence  LPNP. PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  VDPKSVTSWADL. . . . . . WKPEYKGSLLLTDDAREVFQMALRKLGYSGNT. . . . . . . . . .
Template Known Secondary structure  S
TTT

SSGGG......GSGGGTT

S
TT

TT
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   143......150.... .....160.........170.........180......
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  . . TDPKEIEAAYNELKKLMPNVA. . . AFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGT
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TGGG...
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   187..190.........200....... ..210.........220.........230.........240.
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  PIDVVWPK. . . . . . EGGIFWMDSLAIPANAKNKEGALKLIN. FLLRPDVAKQVAETIGYP
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T......T

B
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   242....... 250.........260.........270...... ...280.........290....
 
   302....... 310.........320.........330.........340........
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Query Sequence  AVALKSYE. . . EELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAV
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Template Conservation 
                                                 
Template Sequence  TPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAASSIYEEYYQKL
Template Known Secondary structure 
SBSTTTTTS
T
TTTS

S



GGG
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   295....300.........310.........320.........330.........340....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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