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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank14Aligned Residues511
% Identity75%Templatec2nvuB_
PDB info PDB header:protein turnover, ligaseChain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex
Resolution2.80 Å
Model Dimensions (Å)X:73.177 Y:85.226 Z:58.841

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   2.......10.........20.........30.........40.........50.........60.
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Query Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
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Template Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
Template Known Secondary structure 


TTS

TTS
SS



TTSS
S
S
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   1002.......1010.........1020.........1030.........1040.........1050.........1060.
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
Template Known Secondary structure  TT
B





TSB
TTTTT


TT
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   1062.......1070.........1080.........1090.........1100.........1110.........1120.
 
   122.......130.........140.........150.........160.........170.........180.
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Query Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
Template Known Secondary structure  T
SS

SBSTTTTT




SSTT

SSS
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   1122.......1130.........1140.........1150.........1160.........1170.........1180.
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
Template Known Secondary structure  TSSSSS

TT

TTT

TTTTTTTTTTT
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   1182.......1190.........1200.........1210.........1220.........1230.........1240.
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKVAL
Template Known Secondary structure 



B


B
SSS




BSS
STTTTTSSTT


B
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   1242.......1250.........1260.........1270.........1280.........1290.........1300.
 
   302.......310.........320.........330.........340.........350.........360.
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Query Sequence  AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAA
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Template Sequence  KSYEE. . . . . . . . . . . . EATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAA
Template Known Secondary structure  T............

S
B


STTTTSS
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   1306...1310 .........1320.........1330.........1340.........1350...
 
   362.......370.........380.........390.........400 .........410.........
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Query Sequence  LAAAQTNAAAKVDILGVDFDNTTMLQMVENIKTFFANQS. . TNNLFIVTANPEIVNYATT
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Template Sequence  LAAAQTNAAADWE. . . . . . . . . . . . GRWNHVKKFLERSGPFTHPDFEPST. . . . . . . . . .
Template Known Secondary structure  SSS
T............TTTS

TTS
TT



S..........
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   1362.......1370.... .....1380.........1390.........
 
   420.........430.. .......440.........450... ......460.........470
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Query Sequence  HQAYLELINQASY. . IVADGTGVVKASHRLKQPLAH. . . . . . . RIPGIELMDECLKIAHV
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Template Sequence  . ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD
Template Known Secondary structure  .T



SSTTT



B

GGGGGT
TT

GGG
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   2040.........2050.........2060.........2070.........2080.........2090........
 
   471........480.........490.........500.........510.........520.........530
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Query Sequence  NHQKVFLLGATNEVVEAAQYALQQRYPNISFAHHHGYIDLEDETVVKRIKLFKPDYIFVG
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Template Sequence  IGRPK. . . . . . . . . AEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQ. . . . . FHIIVCG
Template Known Secondary structure  TTSB.........STT
S
GGGS
T.....
S
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   20992100... ......2110.........2120.........2130....... ..2140....
 
   531........540....... ..550.........560.
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Query Sequence  MGFPKQEEWIMTHENQF. . . . . . . . . . ESTVMMGVGGSLEV
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Template Sequence  LDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGF
Template Known Secondary structure 
S
T

TT
GGG


TT
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   2145....2150.........2160.........2170.........2180.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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