Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence80.02%DateSun Sep 7 16:46:09 BST 2014
Rank149Aligned Residues194
% Identity11%Templatec3lkbB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:probable branched-chain amino acid abc PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  DAALAAAQTNAAAKVDILGVDF. . . . . . DNTTMLQMVENIKTFFANQSTNNLFIVTANPE
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Template Sequence  GAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIP. . VFLSYATG
Template Known Secondary structure  TSSTT
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   28.30.........40.........50.........60.........70....... ..80.....
 
   413......420.........430.........440.........450.........460 .........470
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Query Sequence  IVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIEL. . MDECLKIAHV
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Template Sequence  AN. . . . . . LQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAR
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   86. ..90.........100.........110.........120.........130.........
 
   471.. ......480.........490...... ...500... ......510.........520....
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Query Sequence  NHQ. . KVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKLFKP
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Template Sequence  EKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGV
Template Known Secondary structure  STT

SSTTT


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   140.........150.........160.........170.........180.........190.........
 
   525....530.........540.........550.........560
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Query Sequence  DYIFVGMGFPKQEEWIMTHENQFESTVMMGVGGSLE
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Template Sequence  EYVVHQNVAGPVANILKDAKRLGLKMRHLGAHYTGG
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   200.........210.........220.........230.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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