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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank87Aligned Residues306
% Identity15%Templatec3c9hB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDT. GIKVTVE. . HPDKLEEKFPQVAATGDGP
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Template Sequence  KTDAQTLVVYSSLD. . EPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKT
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TT

S
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B
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Query Sequence  DIIFW. . AHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSL
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Template Sequence  ADFAFSSAMDLQVKLSNDGYAQRSDL. . . . . . AMSARWPAWANWRNTAYALTF. . EPAVF
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SS
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Query Sequence  IYNKDLLPNP. . PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYEN
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Template Sequence  VYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMS. . . . . . . . . .
Template Known Secondary structure  GGG
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   140.........150.........160.........170.........180.........
 
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Query Sequence  GKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWS
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Template Sequence  . . . . . . . . . RDQEQFGDIWSVIKAMGAAGVKVY. STSSAILERVSDGRFVLGYNILGSYA
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TTTT
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   190.........200.........210... ......220.........230.........
 
   235....240.........250.........260.........270.........280.........290....
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Query Sequence  NIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAV
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Template Sequence  ADWASRHPDVGIVLP. . . . . KDYTVVMSRIGLVPEAAANPELGRRYLE. FFMSKEGQTIM
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   240.........250.... .....260.........270.........280.. .......290...
 
   295....300.........310.........320.........330.........340.......
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Query Sequence  NKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTA
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Template Sequence  ARQLQIPAVSP. . . . EVAGENTANTMQAIHGAQLRPVPVSPGLMVYLDQVKRS
Template Known Secondary structure  S


B

T....T

SSSBGGG

STTGGGGS

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Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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