Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence94.59%DateSun Sep 7 16:46:09 BST 2014
Rank128Aligned Residues197
% Identity10%Templatec3lopA_
PDB info PDB header:substrate binding proteinChain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   359360.........370.........380 .........390.........400.........410..
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Query Sequence  DAALAAAQTNAAAKVDILGVDF. . . . . . DNTTMLQMVENIKTFFANQSTNNLFIVTANPE
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Template Sequence  NAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDXARVD. . NPVALLTVVGT
Template Known Secondary structure  TTTBTTB

TT
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   56...60.........70.........80.........90.........100.. .......110...
 
   413......420.........430.........440.........450.........460.........470..
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Query Sequence  IVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHVNH
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Template Sequence  ANVEA. . . LXREGVLAEARLPLVGPATGASSXTTDPLVFPIKASYQQEIDKXITALVTIG
Template Known Secondary structure  ...TTT

S
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GGGGS
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   114.... .120.........130.........140.........150.........160.........170
 
   473 ......480.........490...... ...500... ......510.........520.......
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Query Sequence  Q. KVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKLFKPDYI
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Template Sequence  VTRIGVLYQEDALGKEAITGVERTLKAHALAITAXASYPRNTANVGPAVDKLLAADVQAI
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TTTTT


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S
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   171........180.........190.........200.........210.........220.........230
 
   528.530.........540.........550.........560
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Query Sequence  FVGMGFPKQEEWIMTHENQFESTVMMGVGGSLE
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Template Sequence  FLGATAEPAAQFVRQYRARGGEAQLLGLSSIDP
Template Known Secondary structure  S
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   231........240.........250.........260...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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