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Job Descriptionmulti-dom
Confidence92.84%DateSun Sep 7 16:46:09 BST 2014
Rank130Aligned Residues234
% Identity18%Templatec4ib2B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of a putative lipoprotein (rumgna_00858) from2 ruminococcus gnavus atcc 29149 at 1.76 a resolution
Resolution1.76 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60......
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHD
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Template Sequence  TIKVAASATPHAEIL. EQAKSILKKEGYQLEVTVFDDYV. QPNEVVESGEF. DANYFQHV
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   38.40.........50.. .......60.........70..... ....80...... ...90....
 
   67..70.........80.........90.........100.........110.........120......
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Query Sequence  RFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNP
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Template Sequence  PYLESFNEEKGTHLVD. . . . . . . . . . . . . . . . . . . . . . . AGDIHYEPFGIYPGT. . . . . .
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   95....100.........110 .........120.....
 
   127..130.........140.........150.........160.........170.........180......
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Query Sequence  PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDN
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Template Sequence  KKSLDEI. . . . . . . . SEGDKIAVPNDTTNEARALLLLQDNGIITLKDGAGLNATVNDIEE
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GGG
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   126...130.. .......140.........150.........160.........170.......
 
   187..190.........200.........210.........220.........230.........240......
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Query Sequence  AGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVT
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Template Sequence  . . . . . . . . . . . . . . . NPYNVEIVELEAAQVARVTGETAYVVLNGNYALEAGYSVAKDALA
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TT


GGGGGGGTTTSS
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   178.180.........190.........200.........210.........220..
 
   247..250.........260.........270.........280.........290.........
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Query Sequence  VLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKP
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Template Sequence  YEK. . . SDSEAAKTYVNIIAVKEGNEKEEKIQALVK. ALKSDEIKEYIEKTYD
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TT
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   223.. ....230.........240.........250..... ....260.........270.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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