Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence45.41%DateSun Sep 7 16:46:09 BST 2014
Rank247Aligned Residues117
% Identity15%Templatec2pfzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30... ......40.... .....50.........60......
Predicted Secondary structure 







..


..








Query SS confidence 






















. .










. .





















Query Sequence  WINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGDGPDIIFWAHD
Query Conservation 
         
      


  
..


     

 ..  

  
  

  


      
Alig confidence 






















..










..












.







Template Conservation   
           

  
 
 
 
 
 
 
   
 
    
    
  
 
.
       
Template Sequence  YPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQA. QIGEILLT
Template Known Secondary structure  S
TTSTTS

TTSSS
GGGTTSS.SGG
Template Predicted Secondary structure 

















.


Template SS confidence 



























































   10.........20.........30.........40.........50.........60 ........
 
   67..70.........80. ........90.........100.........110.........
Predicted Secondary structure 





.......





Query SS confidence 














. . . . . . .





































Query Sequence  RFGGYAQSGLLAEIT. . . . . . . PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYN
Query Conservation          
 
 

 .......      
            


 



       
 

Alig confidence 














.......





































Template Conservation        
   
  

                           
   
           
 
Template Sequence  NFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQGIFAN
Template Known Secondary structure  GGTTT
GGGTGGGSTTS

STTT



S
Template Predicted Secondary structure 






















Template SS confidence 



























































   6970.........80.........90.........100.........110.........120........
 
   120.........130...
Predicted Secondary structure 




Query SS confidence 













Query Sequence  KDLLPNPPKTWEEI
Query Conservation 



 


 




Alig confidence  .....








Template Conservation  ..... 

    

Template Sequence  . . . . . RDIKQVSDM
Template Known Secondary structure  .....S

SSGGGG
Template Predicted Secondary structure  .....




Template SS confidence 













   129130.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D