Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank67Aligned Residues358
% Identity18%Templatec2b3fD_
PDB info PDB header:sugar binding proteinChain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose
Resolution1.56 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10........ .20.........30. ........40 .........50........
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Query Sequence  GKLVIWINGDKGY. NGLAEVGKKFEKD. TGIKVTVEH. . . . . PDKLEEKFPQVAATGDGP
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Template Sequence  MKLEIFSWWAGDEGPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRMLGGDPP
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GGG

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   1........10.........20.........30.........40.........50.........60
 
   5960..... ....70.........80.. .......90.........100.........110. .
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Query Sequence  DIIFWAH. . DRFGGYAQSGLLAEITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAV. E
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Template Sequence  DTFQVHAGMELIGTWVVANRMEDLSALFRQEGWLQAFPKGLIDLISYKGGIWSVPVNIHR
Template Known Secondary structure  STTTTTTTTT
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   61........70.........80.........90.........100.........110.........120
 
   113......120.... .....130.........140.........150.........160........
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Query Sequence  ALSLIYNKDLLP. . . . NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGY
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Template Sequence  SNVMWYLPAKLKGWGVNPPRTWDKFLATCQTLKQKGLEAPLALGENWTQQHLWESVALAV
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   121........130.........140.........150.........160.........170.........180
 
   169170.........180.........190.........200......... 210.........220.......
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Query Sequence  AFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADT. DYSIAEAAFNKGETAMTI
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Template Sequence  LGPDDWNNLWNGKLKFTDPKAVRAWEVFGRVLDCANKDAAGLSWQQAVDRVVQGKAAFNI
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   181........190.........200.........210.........220.........230.........240
 
   228.230......... 240.........250.........260.........270.........280..
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Query Sequence  NGPWAWSNIDTS. . . . . KVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLE
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Template Sequence  MGDWAAGYMTTTLKLKPGTDFAWAPSP. . . GTQGVFMMLSDSFGLPKGAKNRQNAINWLR
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   241........250.........260....... ..270.........280.........290.......
 
   283......290.........300.........310.........320.........330........
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Query Sequence  NYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMS. . . .
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Template Sequence  . LVGSKEGQDTSNPLKGSIAARLDSDPSKY. . NAYGQSAMRDWRSNRIVGSLVHGAVAPE
Template Known Secondary structure  .TSS
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   298.300.........310.........320...... ...330.........340.........350....
 
   339340.........350.........360.........370
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Query Sequence  AFWYAVRTAVINAASGRQTVDAALAAAQTNAA
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Template Sequence  SFMSQFGTVMEIFLQTR. NPQAAANAAQAIAD
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   355....360.........370. ........380.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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