Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank60Aligned Residues368
% Identity17%Templatec2uvgA_
PDB info PDB header:sugar-binding proteinChain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10 .........20.........30. ........ 40.........50.........60.
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Query Sequence  GKLVI. WINGDKGYNGLAEVGKKFEKD. TGIKVTVE. . HPDKLEEKFPQVAATGDGPDII
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Template Sequence  VNLRMSWWGGNGRHEVTLKALEEFHKEHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVM
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TT

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   28.30.........40.........50.........60.........70.........80.......
 
   62.......70.........80.. .......90.........100.........110........
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Query Sequence  FWAHDRFGGYAQSGLLAEITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY
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Template Sequence  QTNWNWLPIFSKDGTGFYNLFSVKEQLDLAQFDPKELQQTTVNGKLNGIPISVTARIFYF
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GGGGTTTS
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   88.90.........100.........110.........120.........130.........140.......
 
   119120.... .....130.........140.........150.........160.........170....
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Query Sequence  NKDLLP. . . . NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYEN
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Template Sequence  NDATWAKAGLEYPKTWDELLAAGQVFKEKLGDQYYPVVLEHQDTLALIRSYMTQKYNIPT
Template Known Secondary structure  T



SST
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   148.150.........160.........170.........180.........190.........200.......
 
   175....180.........190.........200........ .210.........220........
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Query Sequence  GKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . . . . . TDYSIAEAAFNKGETAMTIN
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Template Sequence  IDEANKKFAYSPEQWVEFFTMYKTMVDNHVMPSTKYYASFGKSNMYEMKPWNGEWAGTYM
Template Known Secondary structure  TTTT


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   208.210.........220.........230.........240.........250.........260.......
 
   229230......... 240.........250..... ....260.........270.........280...
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Query Sequence  GPWAWSNIDTS. . . KVNYGVTVLPTFKGQP. . SKPFVGVLSAGINAASPNKELAKEFLEN
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Template Sequence  WNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKSTKHPQESAMLIN.
Template Known Secondary structure  GGGTS
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   269270.........280.........290.........300.........310.........320.......
 
   284.....290.........300.........310... ......320.........330.......
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Query Sequence  YLLTDEGLEAVNKDKPLGAVALKSYEEELA. . . . . KDPRIAATMENAQKGEIMPNIPQM.
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Template Sequence  FLLNSKEGVELGLERGVPLSATAVTQLRASGVIKDEDPSVAGLNMALELPHKMTTSPYFD
Template Known Secondary structure  S

TTTTSSB
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   328.330.........340.........350.........360.........370.........380.......
 
   338.340.........350.........360.........370....
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Query Sequence  . SAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAKVD
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Template Sequence  DPQIVSLFGDAIQYIDYGQKTVQETAEYFNKQGDRILK
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   389390.........400.........410.........420......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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