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Job Descriptionmulti-dom
Confidence69.29%DateSun Sep 7 16:46:09 BST 2014
Rank173Aligned Residues180
% Identity13%Templatec4maaA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:putative branched-chain amino acid abc transporter, PDBTitle: the crystal structure of amino acid abc transporter substrate-binding2 protein from pseudomonas fluorescens pf-5
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   357..360.........370.........380. ........390.........400.........410
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Query Sequence  TVDAALAAAQTNAAAKVDILGVDFD. . . . . . NTTMLQMVENIKTFFANQSTNNLFIVTAN
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Template Sequence  FADXGSRLAVEQYPT. . . LLGRPLHYKVIDTEGNAGKAVRRVQEAIAQDGARFFQGCTLS
Template Known Secondary structure  T
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   50.........60.... .....70.........80.........90.........100......
 
   411........420.........430.........440.........450.........460... ..
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Query Sequence  PEIVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDE. . . . . CL
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Template Sequence  SSA. . . . . . . LAVAKEVGKVGGVFXTPVGADEITGKDCNASTFRWSVPTYGAIRETXVPL
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GGGGTTT

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   107.. 110.........120.........130.........140.........150.........
 
   466...470.........480.........490...... ...500... ......510.........520.
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Query Sequence  KIAHVNHQKVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKL
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Template Sequence  IKLLPEAKRWYTITPQYVFGEALLEGAKQVCAEHGIEHIGNSYHSLQEQEFSGYLTNAIA
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   160.........170.........180.........190.........200.........210.........
 
   522.......530.........540......
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Query Sequence  FKPDYIFVGMGFPKQEEWIMTHENQ
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Template Sequence  ARPDVLVLLNFGSQSSNALRQAVNF
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   220.........230.........240....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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