Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence54.64%DateSun Sep 7 16:46:09 BST 2014
Rank219Aligned Residues120
% Identity18%Templatec4pf8A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:trap-t family transporter, dctp (periplasmic binding) PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 sulfitobacter sp. nas-14.1 (target efi-510299) with bound beta-d-3 galacturonate
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30... ......40..... ....50.........60....
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Query Sequence  VIWINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWA
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Template Sequence  NIHVEDYPVSHGXEAFXEEVTEKTGGEIKGKVFHAGVLGSQPDAIEQLRLGIX. DFGVFS
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   31........40.........50.........60.........70.........80... ......
 
   65....70.........80.. .......90.........100.........110......
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Query Sequence  HDRFGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSL
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Template Sequence  LGPXGQAVPATNVVSLPFVFKSVPQXYELXDGEPGAALGKALEEKGIVALGYYDAGARSF
Template Known Secondary structure  TTT
GGGGGGGSTT
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   90.........100.........110.........120.........130.........140.........
 
   117..120.........130...
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Query Sequence  IYNKDLLPNPPKTWEEI
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Template Sequence  YNS. . . . VKPINTPEDV
Template Known Secondary structure  S....S



SGGGG
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   150.. .......160..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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