Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.59%DateSun Sep 7 16:46:09 BST 2014
Rank109Aligned Residues224
% Identity18%Templated1amfa_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.75

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
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Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  GKITVFAAA. SLTNAMQDIATQFKKEKGVDVVSSFASS. . STLARQIEAGAPADLFISAD
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G.GG


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   3......10. ........20.........30......... 40.........50.........
 
   66 ...70.........80.........90.........100.........110.........120....
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Query Sequence  D. RFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  QKWMDYAVDKKAIDTATR. . . . . . . . . . . . . . . . . . . . . . . . QTLLGNSLVVVAPKASVQ
Template Known Secondary structure  TT
B
GGG
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   60.........70....... ..80.........90.....
 
   125 ....130.........140.........150.........160.........170.........180..
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Query Sequence  N. . PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDV
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Template Sequence  KDFTIDSKTNWTSL. . . . LNGGRLAVGDPEHVPAGIYAKEA. . . . . . . . . . . . . . . . . . .
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STT

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   96...100......... 110.........120.........130..
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  GVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN
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Template Sequence  . . . . . . . LQKLGAWDTL. . SPKLAPAEDVRGALALVERNEAPLGIVYGSD. . . AVASKGV
Template Known Secondary structure  .......TT
..GGGSSTTSSS...
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   133......140.. .......150.........160.........170... ......180
 
   243......250.........260.........270.........280.........290........
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Query Sequence  YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK
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Template Sequence  KVVATFP. . . . . EDSHKKVEYPVAVVEGHNNA. TVKAFYD. YLKGPQAAEIFKRYG
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BTT

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   181...... ..190.........200....... ..210.... .....220.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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