Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank92Aligned Residues275
% Identity17%Templated1q35a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
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Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  NEVNVYSYRQP. . YLIEPMLKNFEKDTGIKVNIIFADGLVDRVKQEGELSPADVLLTVDI
Template Known Secondary structure 
SS
G..GGT





GGG



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   2.......10.. .......20.........30.........40.........50.........
 
   66...70.........80.........90.........100.........110.........120.....
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Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
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Template Sequence  SRVMEIVNADLAQKIDS. . . . . . KVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGK
Template Known Secondary structure  TT
B




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GGGB
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   61........70....... ..80.........90.........100.........110....
 
   126...130.........140.........150.........160.........170.........180.....
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Query Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
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Template Sequence  LPAGFDYLDLAKPEYKGK. . . . VCVRSGKNSYNVSLFAAM. . . . . . . . . . . . . . . . . . IE
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TT

GGGGGSGGGTT
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   115....120.........130.. .......140.........150 ..
 
   186...190.........200.........210.........220.........230.........240.. .
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Query Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN. . Y
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Template Sequence  HYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSW
Template Known Secondary structure  TBSS


S
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STSTTT
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   153......160.........170.........180.........190.........200.........210..
 
   244.....250.........260.........270.........280.........290.........300...
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Query Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV
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Template Sequence  AEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIE. YLSGEKAQGLYAELNHEYPV
Template Known Secondary structure  T


STT
BBTT
TT.S

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   213......220.........230.........240.........250. ........260.........270.
 
   304.....310.
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Query Sequence  ALKSYEEE
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Template Sequence  KEGIEPSA
Template Known Secondary structure  STT



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   272.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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