Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank77Aligned Residues323
% Identity17%Templatec3ttkA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:polyamine transport protein; PDBTitle: crystal structure of apo-spud
Resolution2.97 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60...
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Query Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW
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Template Sequence  DNKVLHVYNWSDYIA. . . PDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVP
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Query Sequence  AHDRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRY. . NGKLIAYPIAVEALSLIYNK
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Template Sequence  SNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNP
Template Known Secondary structure  BTT
B



GGG
TTGGGB
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   83......90.........100.........110.........120.........130.........140..
 
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Query Sequence  DLLPN. . . . . . PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYEN
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Template Sequence  DKVKAAFGDNAPVDSWDLVFKPENIQKLKQCG. VSFLDSPTEILPAALHYLGYKPDT. . .
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   143......150.........160.........170.... .....180.........190........
 
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Query Sequence  GKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWS
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Template Sequence  . . . . . . . . . DNPKELKAAEELFLKIRPY. . . VTYFHSSKYISDLANGNICVAIGYSGDIY
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   199200.........210....... ..220.........230.........240......
 
   235....240.........250.........260.........270.........280.........290....
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Query Sequence  NIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAV
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Template Sequence  QAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVN. FLMKPEIMAEI
Template Known Secondary structure  TTSS




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   295....300........ .310.........320.........330...... ...340......
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Query Sequence  NKDKPLGAVALKSY. . . EEELAKDPRIAATMENAQKGEIMPNIPQ. . . . . MSAFWYAVRT
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Template Sequence  TDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKS
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BSBGGGGGGS
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SSSGGG
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Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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