Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence47.89%DateSun Sep 7 16:46:09 BST 2014
Rank239Aligned Residues108
% Identity15%Templatec4mijA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 polaromonas sp. js666 (bpro_3107), target efi-510173, with bound3 alpha/beta d-galacturonate, space group p21
Resolution1.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40..... ....50.........60.........
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  DYPTVAAVKYMGELLEKKSGGKHKIKVFNKQALGSEKETIDQVKIGAL. DFTRVNVGPMN
Template Known Secondary structure  T
TTTS

TTTT

TTSS.SSGGGT
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   43......50.........60.........70.........80.........90 .........100.
 
   70.........80.. .......90.........100.........110.........120.
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Query Sequence  GYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  AICPLTQVPTMPFLFSSIAHMRKSLDGPVGDEILKSCESAGFIGLAFYDSGARSIYAKKP
Template Known Secondary structure  TTSGGGSTT
SSSSGGGGT



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   102.......110.........120.........130.........140.........150.........160.
 
   122
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Query Sequence  L
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Template Sequence  I
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   162
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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