Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence50.60%DateSun Sep 7 16:46:09 BST 2014
Rank233Aligned Residues119
% Identity13%Templatec2vpnB_
PDB info PDB header:transportChain: B: PDB Molecule:periplasmic substrate binding protein; PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40..... ....50.........60......
Predicted Secondary structure 










..








Query SS confidence 




































. .




















Query Sequence  VIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWAHD
Query Conservation   

         
      


  



     

  .. 

  
  

  


      
Alig confidence 




































..











.







Template Conservation     
           

  
   
 
 
 
   
 

        
  
 
.
       
Template Sequence  HEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGIL. QFVNQSPG
Template Known Secondary structure 
SS
TTSSS

TTSS
STTS
.S
Template Predicted Secondary structure 


















.


Template SS confidence 



























































   7..10.........20.........30.........40.........50....... ..60.....
 
   67..70.........80......... 90.........100.........110.....
Predicted Secondary structure 






...........




Query SS confidence 






















. . . . . . . . . . .

























Query Sequence  RFGGYAQSGLLAEITPDKAFQDK. . . . . . . . . . . LYPFTWDAVRYNGKLIAYPIAVEALS
Query Conservation          
 
 

       
 ...........           


 



       
Alig confidence 






















...........

























Template Conservation        
      

 
                             

  
     
   
Template Sequence  FTGSLIPSAQIFFIPYLMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMV
Template Known Secondary structure  TTTSGGGGGGGSTT
S
SS
TTTT
Template Predicted Secondary structure 

















Template SS confidence 



























































   66...70.........80.........90.........100.........110.........120.....
 
   116...120.........130...
Predicted Secondary structure 




Query SS confidence 

















Query Sequence  LIYNKDLLPNPPKTWEEI
Query Conservation 
 





 


 




Alig confidence 




.....







Template Conservation       .....

 
  

Template Sequence  VTADE. . . . . PITSPEDF
Template Known Secondary structure  SS.....


SGGGG
Template Predicted Secondary structure 

.....



Template SS confidence 

















   126...130 ........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D