Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence40.85%DateSun Sep 7 16:46:09 BST 2014
Rank265Aligned Residues192
% Identity11%Templated1qo0a_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution2.25

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   359360.........370.........380 .........390.........400.........410..
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Query Sequence  DAALAAAQTNAAAKVDILGVDF. . . . . . DNTTMLQMVENIKTFFANQSTNNLFIVTANPE
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Template Sequence  RYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHT
Template Known Secondary structure  TT
BTTB



TT
S




S
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   28.30.........40.........50.........60.........70.........80.......
 
   413......420.........430.........440.........450..... ....460.........470
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Query Sequence  IVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRI. . PGIELMDECLKIAHV
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Template Sequence  R. . . . . . . KAVMPVVERADALLCYPTP. . . YEGFEYSPNIVYGGPAPNQNSAPLAAYLIR
Template Known Secondary structure  .......T

S
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TT
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GGGT
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   88 .90.........100....... ..110.........120.........130.......
 
   471.. ......480. ........490.........500.........510... ......520...
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Query Sequence  NHQ. KVFLLGAT. . . . NEVVEAAQYALQQRYPNISFAHHHGYIDLEDE. . TVVKRIKLFK
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Template Sequence  HYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQAR
Template Known Secondary structure  S
SSSTTT

SS

T
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   138.140.........150.........160.........170.........180.........190.......
 
   524.....530.........540...... ...550.........560
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Query Sequence  PDYIFVGMGFPKQEEWIMTHENQ. . FESTVMMGVGGSLE
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Template Sequence  ADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSE
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S

STT
SS



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   198.200.........210.........220.........230......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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