Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.87%DateSun Sep 7 16:46:09 BST 2014
Rank103Aligned Residues284
% Identity12%Templatec3cfzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30 .........40.........50.........60...
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Query Sequence  EGKLVIWINGDKGYNGLAEVGKKFEK. DTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW
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Template Sequence  KIVLKIFHAG. SLSVPFEEYEKMFEKEHPNVDVEREPAG. SVACVRKIIDLGKKADILAS
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G.GG
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   37..40...... ...50.........60.........70.... .....80.........90....
 
   64.....70.........80.. .......90.........100.........110.........
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Query Sequence  . AHDRFGGYAQSGLLAEITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYN
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Template Conservation              
 
                                             
Template Sequence  ADYSLIPQMMMPKYADWYVMFARNEIVLAYTDKSKYKDEINSTNWYKILQRPDVKIGFSN
Template Known Secondary structure  SSTTTTTTT
S




TTSTTTTT

TTTTTSTT


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   95....100.........110.........120.........130.........140.........150....
 
   120.........130.........140.........150.........160.........170.........
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Query Sequence  KDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDI
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Template Sequence  PNDDPCGYRTQMVLQLAELYYKDPTIYDNLVLKHSNIKV. . . . . . . EENNGTYLILVPKE
Template Known Secondary structure  TTT
T
TTTGGGBS
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   155....160.........170.........180.........190... ......200.......
 
   180.........190.........200.........210.........220.........230.........
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Query Sequence  KDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTS
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Template Sequence  LDVDTNKLFVRSKETDLLAPLEAGAFDYLFIYKS. . VANQHHLKYIELPKEINLGYYEYA
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B
TTTSSGGGGTTSSS..TT



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GGG
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   208.210.........220.........230.........240. ........250.........260.....
 
   240.........250.........260.........270.........280.........290.........
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Query Sequence  KVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKP
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Template Sequence  DTYKKVALKIIAKNKTINAKPIVYGMTVPTNAPHKKEAIEFVK. FVLGHPEVLENNGQPA
Template Known Secondary structure  TTGGGT





TT
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TTTT

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   266...270.........280.........290.........300........ .310.........320....
 
   300
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Query Sequence  L
Query Conservation   
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Template Conservation 
Template Sequence  I
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   325
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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