Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence53.07%DateSun Sep 7 16:46:09 BST 2014
Rank225Aligned Residues223
% Identity9%Templatec3ksmA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380.........390.........400.........410.......
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Query Sequence  VDAALAAAQTNAAAKVDILGVDFDNTTMLQMVENIKTFFANQSTNNLFIVTANPEIVNYA
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Template Sequence  VYLGAQKAADEAGVTLLHRSTKDD. GDIAGQIQILSYHLSQAPPDALILAPNSAED. . . .
Template Known Secondary structure  T



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   56...60.........70......... 80.........90.........100.........110
 
   418.420.........430.........440.........450.........460.........470... ...
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Query Sequence  TTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHVNHQ. KVF
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Template Sequence  . LTPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKERNIA
Template Known Secondary structure  .TTT

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   111........120.........130.........140.........150.........160.........
 
   477..480... .. ....490.........500... ......510.........520.........
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Query Sequence  LLGATNE. . VV. . . EAAQYALQQRYPNISFAH. . HHGYIDLEDETVVKRIKLFKPDYIFV
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Template Sequence  LLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEXLRLLKETPTIDGL
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   170.........180.........190.........200.........210.........220.........
 
   530.........540.........550 .........560.. .......570........
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Query Sequence  GMGFPKQEEWIMTHENQFEST. . . VMMGVGGSLEVF. . . . . . . . AGAKKRAPYIFRKLNI
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Template Sequence  FTPNESTTIGALVAIRQSGXSKQFGFIGFDQTEELEAAXYAGEISNLVVQNPEYXGYLAV
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   230.........240.........250.........260.........270.........280.........
 
   579580......
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Query Sequence  EWIYRALI
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Template Sequence  QRALDLVR
Template Known Secondary structure  T
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   290.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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