Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank63Aligned Residues366
% Identity18%Templatec3zkkA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:xos binding protein; PDBTitle: structure of the xylo-oligosaccharide specific solute2 binding protein from bifidobacterium animalis subsp.3 lactis bl-04 in complex with xylotetraose
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10........ .20.........30.. ....... 40.........50.... ...
Predicted Secondary structure 





..


.

..


.


Query SS confidence 














. .













.






. .














.


Query Sequence  EEGKLVIWINGDKGY. . NGLAEVGKKFEKDT. GIKVTVE. . HPDKLEEKFPQVAAT. GDG
Query Conservation 
 
 
 

       ..  
      


  .



   ..  

   

  
  
.
  
Alig confidence 














..













.






..














.


Template Conservation 
 



 
                  
    
 
 
            

     
 
  
Template Sequence  DDKTITFWHNASAGEGRQYWENLAKSFEEANPGTKVEIQAIQNEDFAGKLQTAMQDPASG
Template Known Secondary structure 

S


SSTT


TTSGGGS
Template Predicted Secondary structure 















Template SS confidence 



























































   30.........40.........50.........60.........70.........80.........
 
   58.60... ......70.........80.. .......90.........100.........110.....
Predicted Secondary structure 

.









.




Query SS confidence 





.


















.
































Query Sequence  PDIIFW. AHDRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALS
Query Conservation 


   .           
 
 

  .     
            


 



       
Alig confidence 





.


















.
































Template Conservation 


               
 
  
                      
  
  
       
Template Sequence  PDVFMSLGGAKTKEMIDAGQVMDLTDKISDTVKTDMKTTLSAATFDGKVYGVPVSVEPGG
Template Known Secondary structure 
S


TTT
S


TTTS
TTTTGGGGTT

Template Predicted Secondary structure 
























Template SS confidence 



























































   90.........100.........110.........120.........130.........140.........
 
   116...120..... ....130.........140.........150.........160.........170
Predicted Secondary structure 
.....













Query SS confidence 









. . . . .












































Query Sequence  LIYNKDLLPN. . . . . PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAF
Query Conservation 
 





 
.....

 




   




  
                 
   

   
Alig confidence 









.....












































Template Conservation    

       
    
 



                                      
Template Sequence  MWYSKDLFKKAGVSDVPATYEELLADAKKLKDSGTDAIALGAKDAWPAAHWYYWLVLREC
Template Known Secondary structure  T

S

SBTTS


GGGSS
Template Predicted Secondary structure 




























Template SS confidence 



























































   150.........160.........170.........180.........190.........200.........
 
   171........180.........190.........200........ .210.........220...
Predicted Secondary structure 





















.......




Query SS confidence 





































. . . . . . .














Query Sequence  KYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . . . . . . TDYSIAEAAFNKGET
Query Conservation      
  
     
 

   


     
   
     .......         
  

 
Alig confidence 





































.......














Template Conservation 
                    
      
   
                     
  
  
Template Sequence  SPEVYDKSVQDHDFSNACWVNAGKKLQELKDLKVFNDGFLTTTAQQGANSSAGLLANHKA
Template Known Secondary structure 
T


STTT
B
TTGGG

SSSSTTSTTS
Template Predicted Secondary structure 





























Template SS confidence 



























































   210.........220.........230.........240.........250.........260.........
 
   224.....230......... 240.........250... ......260.........270......
Predicted Secondary structure 



......








.









Query SS confidence 















. . . . . .













.






















Query Sequence  AMTINGPWAWSNIDTS. . . . . . KVNYGVTVLPTFKG. QPSKPFVGVLSAGINAASPNKEL
Query Conservation 

 
 
 
        ......    


 

   
.       
     
 
 





Alig confidence 















......













.






















Template Conservation 
                                                 
   
     
Template Sequence  AMELMGAWEPGVLKDLTPDQKPMADLGFFAFPEVAGGEGEPGALMGGVTYFCVNPKASQT
Template Known Secondary structure  TTTTSTTSS

TT


B
TT

S
TT

TT

Template Predicted Secondary structure 





























Template SS confidence 



























































   270.........280.........290.........300.........310.........320.........
 
   277..280.........290.........300.........310 .........320.........330.....
Predicted Secondary structure 












.












Query SS confidence 

































.
























Query Sequence  AKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEE. ELAKDPRIAATMENAQKGEIMPNIP
Query Conservation 
  

   
 
 
            
    
   .    

      
    
   
 

Alig confidence 





.


























.
























Template Conservation 
  
  .   
 
         
  
                                  
Template Sequence  SIDFVN. YMGEKKNQEDYAKAFSTIPASEPARAVVTDESLKQVIEYLDKAPSMQLWMDTA
Template Known Secondary structure  .STS
BSSTGGGGG


TT
S

Template Predicted Secondary structure  .
























Template SS confidence 



























































   330..... ....340.........350.........360.........370.........380........
 
   336...340.........350.........360.........370
Predicted Secondary structure 








Query SS confidence 


































Query Sequence  QMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAA
Query Conservation      
   
  

  
  
  
 



  

  
 
Alig confidence 


































Template Conservation                    
  
 



        
Template Sequence  LGTNIGNALNAAVVNMLSGQGSPEDIVKAMQDAAQ
Template Known Secondary structure 
TTS

T
Template Predicted Secondary structure 





Template SS confidence 


































   389390.........400.........410.........420...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D