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Job Descriptionmulti-dom
Confidence99.46%DateSun Sep 7 16:46:09 BST 2014
Rank111Aligned Residues220
% Identity18%Templatec4kd5A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc-type transport system, molybdenum-specific PDBTitle: substrate binding domain of putative molybdenum abc transporter from2 clostridium difficile
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30. ........40.........50.........60....
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Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKD. TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWA
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Template Sequence  VELNISAAASL. KEAXAKIEEEYKKVDSNVKLTVNYGAS. . GSLQQQIEQGAPCDLFISA
Template Known Secondary structure  GGG.TT
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   43......50... ......60.........70.........80 .........90.........
 
   65 ....70.........80.........90.........100.........110.........120...
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Query Sequence  H. DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL
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Template Sequence  GQKQXKVLDEEKLLVS. . . . . . . . . . . . . . . . . . . . . . . . DTXKDLVKNDLVLISSAD. .
Template Known Secondary structure  SSTT
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   100.........110..... ....120.........130...
 
   124.....130.........140.........150.........160.........170.........180...
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Query Sequence  PNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVG
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Template Sequence  . SSVSGXKDL. . . . . . . TTDKVKKIAVGEAES. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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SGGGG.......GTTT
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   134.....140.. .......150.......
 
   184.....190.........200........ .210.........220.........230.........
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Query Sequence  VDNAGAKAGLTFLVDLIKNKHMNAD. . . . TDYSIAEAAFNKGETAMTINGPWAWSNIDTS
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Template Sequence  . . VPAGKYADEVLTNLNLKDKLKDKLVFAKDVKEVLAWVQSGNADVGFV. . . YFSDTVNN
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   158.160.........170.........180.........190.........200.... .....210..
 
   240.........250.........260.........270.........280.........290.........
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Query Sequence  KVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKP
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Template Sequence  DKIKVVEKTD. . . . . EKTHSPITYPVSVIKASKNVDAAKKFEE. FLLSESGQKIFEEFGY
Template Known Secondary structure  SS

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   213......220.. .......230.........240.........250 .........260......
 
   300.
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Query Sequence  LG
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Template Sequence  KK
Template Known Secondary structure  B
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   267.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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