Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank51Aligned Residues370
% Identity18%Templatec2z8fB_
PDB info PDB header:sugar binding proteinChain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10... ......20.........30.. .......40. ........50......
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Query Sequence  EEGKLVIWIN. . GDKGYNGLAEVGKKFEKDT. GIKVTVEHP. . . . DKLEEKFPQVAATGD
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Template Sequence  GVVNITYMHRLPDSEGMTLVNDIVAKWNKQHPDIQVKATKFDGKASDMIKKLETDVKSGE
Template Known Secondary structure  S





TTS


TT
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GGGT
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   40.........50.........60.........70.........80.........90.........
 
   57..60.........70.........80.. .......90.........100.........110.....
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Query Sequence  GPDIIFWAHDRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALS
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Template Sequence  APDLAQVGYAELPEVFTKGLLQDVTQYAEQYKNDFASGPYSLVQVGGKAYGLPQDTGPLV
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STTTTT
B


GGGB
TTTT


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   100.........110.........120.........130.........140.........150.........
 
   116...120.... .....130.........140.........150.........160.........170
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Query Sequence  LIYNKDLLP. . . . . NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAF
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Template Sequence  YFYNKAEFEKLGITEIPQTADEFIAAAKTAAAAGKYIMSYQPDEAGNMISGLAGASGGWY
Template Known Secondary structure  TT

S


BTT
BS
B

GGGTTTTT

S
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   160.........170.........180.........190.........200.........210.........
 
   171........180.........190.........200......... 210.........220.........
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Query Sequence  KYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADT. DYSIAEAAFNKGETAMTING
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Template Sequence  KVKGDSW. . . VVNTETDGSKATADFYQQLLDAKAATTNPRWDPSFDASIKDGSLIGTVAA
Template Known Secondary structure  TT...



TT
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TTSTT
B
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   220...... ...230.........240.........250.........260.........270......
 
   230.........240. ........250.. .......260.........270.........280...
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Query Sequence  PWAWSNIDTSKV. . . . . NYGVTVLPTFK. GQPSKPFVGVLSAGINAASPNKELAKEFLEN
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Template Sequence  AWEAPLFMTSSGGTGSGEWQVAQLGDWFGNAGKTGPDGGSAVAVLKNSKHPKEAMEFLD.
Template Known Secondary structure  GGGTTTTTTTT


B
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B


BTT
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   277..280.........290.........300.........310.........320.........330.....
 
   284.....290.........300.........310 .........320.........330.........
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Query Sequence  YLLTDEGLEAVNKDKPLGAVALKSYEE. . . . ELAKDPRIAATMENAQKGEIMPNIPQMSA
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Template Sequence  WFNTQVPDLVSQGLVPAATTEDAETPSEWSTFFGGQDIMKEFKTANNNMGDFTYMPGFSA
Template Known Secondary structure  T
TT
SB
SS




TTT

TB





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   336...340.........350.........360.........370.........380.........390.....
 
   340.........350.........360.........370.........380
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Query Sequence  FWYAVRTAVINAASGRQTVDAALAAAQTNAAAKVDILGVDF
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Template Sequence  VAAKMNETAAK. . . ATGKVADIFSDAQTTSVDTLKNFGLSV
Template Known Secondary structure  ...T


TTTT

B
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   396...400...... ...410.........420.........430...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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