Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank72Aligned Residues347
% Identity15%Templated3thia_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30 .........40.........50.........60.....
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEK. DTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH
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Template Sequence  KVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSAD. . . . . . PPDDLDVFVLDS
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S
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   12.......20.........30.........40.........50... ......60.....
 
   66...70.........80.. .......90.........100.........110.........120....
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Query Sequence  DRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  IFLSHFVDAGYLLPFGSQDIDQAEDVLPFALQGAKRNGEVYGLPQILCTNLLFYRKGDLK
Template Known Secondary structure  GGTT

B
GGG
TTGGGB
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   66...70.........80.........90.........100.........110.........120.....
 
   125. ...130.........140.... .....150.........160.........170........
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Query Sequence  NP. . . . . PKTWEEIPALDKELKAKG. KSALMFNLQEPYFTWPLIAADGGYAFKYENGKYD
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Template Sequence  IGQVDNIYELYKKIGTSHSEQIPPPQNKGLLINMAGGTTKASMYLEALIDVTGQYTEYDL
Template Known Secondary structure  T

B






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   126...130.........140.........150.........160.........170.........180.....
 
   179180.........190.........200......... 210.........220.........230.....
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Query Sequence  IKDVGVDNAGAKAGLTFLVDLIKNKHMNADT. . . DYSIAEAAFNKGETAMTINGPWAWSN
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Template Sequence  LPPLDPLNDKVIRGLRLLINMAGEKPSQYVPEDGDAYVRASWFAQGSGRAFIGYSESMMR
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   186...190.........200.........210.........220.........230.........240.....
 
   236...240.........250.........260.........270.........280.........290.....
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Query Sequence  IDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVN
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Template Sequence  MGDYAEQVRFKPISSSAG. QDIPLFYSDVVSVNSKTAHPELAKKLAN. VMASADTVEQAL
Template Known Secondary structure  GGGGGT

BS
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   246...250.........260... ......270.........280.........290. ........300...
 
   296...300.........310.........320.........330.........340.........350.....
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Query Sequence  KDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGR
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Template Sequence  RPQADGQYPQYLL. . . . . . . PARHQVYEALMQ. . . . . DYPIYSELAQIVNKPSNRVFRLG
Template Known Secondary structure  S

STT





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   304.....310...... ...320........ .330.........340.........350.
 
   356...360.........370...
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Query Sequence  QTVDAALAAAQTNAAAKV
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Template Sequence  PEVRTWLKDAKQVLPEAL
Template Known Secondary structure  TTTTT
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   352.......360.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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