Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence52.77%DateSun Sep 7 16:46:09 BST 2014
Rank227Aligned Residues114
% Identity17%Templatec4magA_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:sialic acid binding protein; PDBTitle: crystal structure of the periplasmic sialic acid binding protein from2 vibrio cholerea
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40..... ....50.........60.........
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  GSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLGDL. DITYAEFGRMG
Template Known Secondary structure  TSTTTS
TTTT
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TGGGG
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   13......20.........30.........40.........50.........60 .........70.
 
   70.........80. ........90.........100.........110.........120
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Query Sequence  GYAQSGLLAEIT. . . . . . . . . PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK
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Template Sequence  LWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNR
Template Known Secondary structure  GTSGGGGGGGSTTSSSSS
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   72.......80.........90.........100.........110.........120.........130.
 
   121........130...
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Query Sequence  DLLPNPPKTWEEI
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Template Sequence  . . . . . PLNSIEDF
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SGGGG
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   132.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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