Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank66Aligned Residues363
% Identity20%Templatec3qufB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30. ........40 .........50.......
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Query Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKD. TGIKVTVEH. . . PDKLEEKFPQVAATGDG
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Template Sequence  GGGKTKISFYSYFKD. . NQIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGGKP
Template Known Secondary structure  GG

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   35....40......... 50.........60.........70.........80.........90..
 
   58.60.........70.........80.........90.........100.........110.......
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Query Sequence  PDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLI
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Template Sequence  PTIFNLTXDNRTDVXKSGAALDISGED. FLDGIDDTNFALFQQDGKTYGXPVSAWVGAFF
Template Known Secondary structure 
S
TTTT
B


TT
G.GGTTB
GGGGGGGTT

B

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   93......100.........110......... 120.........130.........140.........150.
 
   118.120..... ....130.........140.........150..... ....160.........
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Query Sequence  YNKDLLPN. . . . . PPKTWEEIPALDKELKAKGKSALMFNLQEP. . . YFTWPLIAADGGYA
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Template Sequence  YNKDILKKAGYDKFPKTWDEFIEXGKKINSNGSTAFLEDFNTQIAGSFTGLLASYYGEQG
Template Known Secondary structure  TT
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   152.......160.........170.........180.........190.........200.........210.
 
   170.........180.........190.........200......... 210.........220......
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Query Sequence  FKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADT. . . DYSIAEAAFNKGETAMT
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Template Sequence  KSGDLDADIWSGKSTFTKDWTPVFKRWEAAAKAGVIPQKSVGLSADQVKQEFVSGNLGVX
Template Known Secondary structure 

SSTTTSS
TTSS
GGGTT

TT
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   212.......220.........230.........240.........250.........260.........270.
 
   227..230.........240.........250..... ....260.........270.........280..
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Query Sequence  INGPWAWSNIDTSKVNYGVTVLPTFKGQP. . . . SKPFVGVLSAGINAASPNKELAKEFLE
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Template Sequence  RSGPWDLPDLQKSDIDFGVAPFPAYSKEDGQWINGGPDQGFAIASRASDKEKAAAKKFLA
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GGGSS




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   272.......280.........290.........300.........310.........320.........330.
 
   283......290.........300.........310.........320.........330.........340..
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Query Sequence  NYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWY
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Template Sequence  . YLNSEEGLEAFTSAAGTLSLSSKYNAEPPAELKDVVDNYFKQNKFYWVNWPKSPTVXST
Template Known Secondary structure  .TST

BTTS




TGGGT




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   332.......340.........350.........360.........370.........380.........390
 
   343......350.........360........
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Query Sequence  AVRTAVINAASGRQTVDAALAAAQTN
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Template Sequence  EGIAQQQKIVQGQISAKDAAKALDAK
Template Known Secondary structure  TTSS
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   391........400.........410......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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