Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence29.19%DateSun Sep 7 16:46:09 BST 2014
Rank322Aligned Residues115
% Identity17%Templatec4ovsB_
PDB info PDB header:solute-binding proteinChain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 sulfurospirillum deleyianum dsm 6946 (sdel_0447), target efi-510309,3 with bound succinate
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40...... ...50.........60.........
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLEE. . KFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  NTPKGKGADFFAKRVGELTNGKVEVIVFPNSQLYGDGEEXKALKLGNA. HIAXPSFSKFT
Template Known Secondary structure  TSTTTS
TTSS

TTTTSS.


BGGGGT
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   35....40.........50.........60.........70.........80.. .......90...
 
   70.........80.. .......90.........100.........110.........120.
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Query Sequence  GYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  SLVPEXQLFDLPFIFRDKDHLYKVLDGEVGQILKDKVSKKGFVALDYWDAGFKHLSSN. .
Template Known Secondary structure  TT
GGGGGGGSTT


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   94.....100.........110.........120.........130.........140.........150.
 
   122.......130...
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Query Sequence  LLPNPPKTWEEI
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Template Sequence  . . KKPILLPEDA
Template Known Secondary structure  ..SS


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   152.......160.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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