Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence41.81%DateSun Sep 7 16:46:09 BST 2014
Rank259Aligned Residues116
% Identity11%Templatec4oanB_
PDB info PDB header:membrane protein/protein transportChain: B: PDB Molecule:trap dicarboxylate transporter dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodopseudomonas palustris haa2 (rpb_2686), target efi-510221, with3 density modeled as (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-4 acetolactate)
Resolution1.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40..... ....50.........60.........
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  THPXNIRAREXAAAIKAETNGRVQIDIFPSNQLGSDTDXLSQIRSGGV. EFFTLSGLILS
Template Known Secondary structure  TSTTTS
TTTT

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   45....50.........60.........70.........80.........90.. .......100...
 
   70.........80.. .......90.........100.........110.........120.
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Query Sequence  GYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  TLVPAASINGIGFAFPDYDTVWKAXDGELGGYVRGEIGKAGLVVXDKIWDNGFRQTTTST
Template Known Secondary structure  TTSGGGGGGG
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STSTT

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   104.....110.........120.........130.........140.........150.........160...
 
   122.......130...
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Query Sequence  LLPNPPKTWEEI
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Template Sequence  . . . RPITGPDDF
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SGGGG
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   164.....170..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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