Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank90Aligned Residues313
% Identity16%Templatec3pu5A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20. ........30.........40.........50........ .60..
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Query Sequence  EGKLVIWINGDKGYNGL. AEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGP. DIIF
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Template Sequence  DDHIYVTSSGGSFLENVRKHXAEPFEKQSGVKVTLVPGTNPAHALKILSSRGTPPYDVAA
Template Known Secondary structure  T


T





SS
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S
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   32.......40.........50.........60.........70.........80.........90.
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  WAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL
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Template Sequence  FGGNDXYRLIRAKKLAQVDE. . . KSVPSLADVPEKFKADWEGCGSLYDYSSVGIAYRPDK
Template Known Secondary structure 
TT
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T...TT
GGGGGS
GGGTGGGTTS


B
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   92.......100.........110. ........120.........130.........140........
 
   123......130.........140.........150.........160.........170.........180..
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Query Sequence  LPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDV
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Template Sequence  IQGGVKSWKEFVERTVAGEFGKQVFFNNLSSNVRG. . AEVLSXFGKIYG. . . . . . . . . . .
Template Known Secondary structure  STT

SSTTTTT

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   149150.........160.........170.........180... ......190.....
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  GVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN
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Template Sequence  . SGYGDIEASIATLERX. KPHIFKFFTAFNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKG
Template Known Secondary structure  .SSTT
.GGG
STTTS
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   196...200.........210. ........220.........230.........240.........250...
 
   243......250.........260.........270.........280.........290.........300..
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Query Sequence  YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGA
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Template Sequence  XVKWVDP. . . . . . TEGAVSSGPVXAVVKGGKEDLAKAFXN. YALGEEAQKAFCEAXYYGA
Template Known Secondary structure  SS

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BTTS
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   254.....260 .........270.........280....... ..290.........300......
 
   303.... ..310.........320.........330.........340..
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Query Sequence  VALKS. YEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWY
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Template Sequence  VNRKVQYSEKLKHRLPSIDSVQLVDTALLIKNXSALLDLWN
Template Known Secondary structure  S
TT



TTTTTTS

TTT
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   307..310.........320.........330.........340.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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