Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence32.15%DateSun Sep 7 16:46:09 BST 2014
Rank309Aligned Residues119
% Identity17%Templatec4pfiA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:trap dicarboxylate transporter-dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 marinobacter aquaeolei vt8 (maqu_2829, target efi-510133), apo open3 structure
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30... ......40.........50.........60......
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Query Sequence  VIWINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHD
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Template Sequence  LEEIEGSVQHLYAQQFREQVEALSGGRIEVDVFPYGSLA. QLTELTRNGSV. NLAFASPG
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   51........60.........70.........80......... 90.........100 ........
 
   67..70.........80.........90.........100 .........110.......
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Query Sequence  RFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRY. . . . . . . . . NGKLIAYPIAVEALSLI
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Template Sequence  HLADTVPETGLFNLHFLLPEEQEPARRLLEAPAFISAFEPAYHNAGLQLLGFVPEGWXTW
Template Known Secondary structure  TTT
GGGGGGGSTT
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   112.......120.........130.........140.........150.........160.........170.
 
   118.120.........130...
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Query Sequence  YNKDLLPNPPKTWEEI
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Template Sequence  TAN. . . . NPLRTPSDF
Template Known Secondary structure  S....S


SGGGG
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   172.. .....180...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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