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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank21Aligned Residues367
% Identity99%Templatec4pqkA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:maltose abc transporter periplasmic protein, truncated PDBTitle: c-terminal domain of dna binding protein
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.
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Query Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
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Template Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
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TT


TTS





TTT
S
S
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   2.......10.........20.........30.........40.........50.........60.
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
Template Known Secondary structure  GGGTT
B





TTB
TBSSS
B


TT
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   62.......70.........80.........90.........100.........110.........120.
 
   122.......130.........140.........150.........160.........170.........180.
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Query Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
Template Known Secondary structure  T
SS

SBGGGTT



SSSGGGTTTTT
BS
B
GGGS
BTT
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   122.......130.........140.........150.........160.........170.........180.
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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BSSSTTSS
TT

TTS
GGGSS
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   182.......190.........200.........210.........220.........230.........240.
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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Template Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
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BBTTB



BSS
S
TTSSS


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   242.......250.........260.........270.........280.........290.........300.
 
   302.......310.........320.........330.........340.........350.........360.
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Query Sequence  AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAA
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Template Sequence  AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA
Template Known Secondary structure  SBTTSS



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   302.......310.........320.........330.........340.........350.........360.
 
   362......
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Query Sequence  LAAAQTN
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Template Sequence  LKDAQTH
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   362......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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