Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank62Aligned Residues360
% Identity18%Templatec4gqoC_
PDB info PDB header:unknown functionChain: C: PDB Molecule:lmo0859 protein; PDBTitle: 2.1 angstrom resolution crystal structure of uncharacterized protein2 lmo0859 from listeria monocytogenes egd-e
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10........ .20.........30 ......... 40.........50.........
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Query Sequence  EGKLVIWINGDKGY. NGLAEVGKKFEK. DTGIKVTVE. . . HPDKLEEKFPQVAATGDGPD
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Template Sequence  KTKVTFWAAPNPTQVKYWDEXAKAYEKENPDVTIEVSQXKESPSSEATIQSAIASKTAPT
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   35....40.........50.........60.........70.........80.........90....
 
   60.........70.........80.. .......90.........100.........110...
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Query Sequence  . IIFWAHDRFGGYAQSGLLAEITP. . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA
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Template Sequence  XSENINRSFAAQLADSKAIVPLNDVKGLDDVVKERNXSETXDSWKFSDGNQYVLPVYSNP
Template Known Secondary structure 
TT
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GGGSTTT
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   95....100.........110.........120.........130.........140.........150....
 
   114.....120...... ...130.........140.........150...... ..
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Query Sequence  LSLIYNKDLLPNP. . . . . PKTWEEIPALDKELKAKGKSALMFNLQEPY. . . . . . . . . . FT
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Template Sequence  ILFAWRLDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWXRWFDFF
Template Known Secondary structure 
TT
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B
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GGGG


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   155....160.........170.........180.........190.........200.........210....
 
   159160.........170.........180.........190.........200.........210........
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Query Sequence  WPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAF
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Template Sequence  PLYDAASKGNAFVEDG. . . . . . KLVADDKAGTELLTFXSELQKNKLLLASKATDP. . . . F
Template Known Secondary structure  TTS

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   215....220.........230 .........240.........250.........260... .
 
   219220.........230...... ...240.........250.. .......260......
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Query Sequence  NKGETAMTINGPWAWSNI. . . . . . . . DTSKVNYGVTVLPTFK. . GQPSKPFVGVLSAG. .
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Template Sequence  ETGTSIXADNGPWTFPNWDEKFPELKYNENYAITAPLVPDSXVNEENVATYADSKGVVXY
Template Known Secondary structure  TS
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BTTT


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GGGTT

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   265....270.........280.........290.........300.........310.........320....
 
   267..270.........280.........290.........300.........310 .........320.
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Query Sequence  INAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEE. . . . . ELAKDPRIAAT
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Template Sequence  AQATDKEKEAAXDFLKFVYNDDKNDLKFLETTNLIPARDDATENETFTAFFKENPELEVY
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   325....330.........340.........350.........360.........370.........380....
 
   322.......330.........340....... ..350.........360.........370....
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Query Sequence  MENAQKGEIMPNIPQMSAFWYAVRTA. VINAASGRQTVDAALAAAQTNAAAKVD
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Template Sequence  AANVPYSIPAXDDAKYNDIQQIIGEEAWNPIVRGEKKPTKAWSDXKKAEDGVLQ
Template Known Secondary structure  GGG
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   385....390.........400.........410.........420.........430........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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