Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence58.24%DateSun Sep 7 16:46:09 BST 2014
Rank210Aligned Residues116
% Identity12%Templatec4ovpB_
PDB info PDB header:solute-binding proteinChain: B: PDB Molecule:c4-dicarboxylate transport system substrate-binding PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 sulfitobacter sp. nas-14.1, target efi-510292, with bound alpha-d-3 manuronate
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40.... .....50.........60.........
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  EHAFTKTLRKFEELVDEKYDGDVTFDLRLNGELGVESDYVTFLNQGVAIDYTILAPSNXA
Template Known Secondary structure  TS
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TTTT

T
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GGG
T
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   40.........50.........60.........70.........80.........90.........
 
   70.........80.. .......90.........100.........110.........120.
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Query Sequence  GYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  KFAPSIPLXDXPFLFRDLDHWNAVLSSDVLAPLEDELLEKADIKIVGYTGGGTRNLLSK.
Template Known Secondary structure  TT
TTGGGGG
TT

SSSSTT
S.
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   100.........110.........120.........130.........140.........150........
 
   122.......130...
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Query Sequence  LLPNPPKTWEEI
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Template Sequence  . . . QPVVTFDDL
Template Known Secondary structure  ...S


S
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   159160.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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