Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank47Aligned Residues361
% Identity28%Templatec2xd3A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: the crystal structure of malx from streptococcus pneumoniae2 in complex with maltopentaose.
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30......... 40.........50.........60....
Predicted Secondary structure 








..








Query SS confidence 
































. .
























Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIFWA
Query Conservation   
 

         
      


  



   ..  

   

  
  

  


    
Alig confidence 





.

























..
























Template Conservation 




 .              


  

 
            

     

  


    
Template Sequence  ELTVYV. DEGYKSYIEEVAKAYEKEAGVKVTLKTGDALGGLDKLSLDNQNGNVPDVMMAP
Template Known Secondary structure 

.
GGGSS




TS


S
Template Predicted Secondary structure 
.














Template SS confidence 



























































   42..... ..50.........60.........70.........80.........90.........100
 
   65....70.........80.. .......90.........100.........110.........120...
Predicted Secondary structure 








.




Query SS confidence 

















.








































Query Sequence  HDRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL
Query Conservation            
 
 

  .     
            


 



       
 





Alig confidence 

















.













..
























Template Conservation            
 
  
                 ..  

  
  
         

    
Template Sequence  YDRVGSLGSDGQLSEVKLSDGAKTDDTTKSLVT. . AANGKVYGAPAVIESLVMYYNKDLV
Template Known Secondary structure  TT
B





GGG


B..
TT

B



TTT
Template Predicted Secondary structure 














..









Template SS confidence 



























































   101........110.........120.........130... ......140.........150........
 
   124.....130.........140...... ...150.........160.........170.......
Predicted Secondary structure 








......











Query SS confidence 






















. . . . . .






























Query Sequence  PNPPKTWEEIPALDKELKAKGKS. . . . . . ALMFNLQEPYFTWPLIAADGGYAFKYENGKY
Query Conservation   


 




   




  
  ......               
   

       
  
Alig confidence 






















......


























..

Template Conservation       
  
                                       
       ..  
Template Sequence  KDAPKTFADLENLAKDSKYAFAGEDGKTTAFLADWTNFYYTYGLLAGNGAYVFGQN. . GK
Template Known Secondary structure  SS


BSGGGB
TTSTT
B
S

TTSTT
..T
Template Predicted Secondary structure 




























..

Template SS confidence 



























































   159160.........170.........180.........190.........200.........210.... ..
 
   178.180.........190.........200........ .210.........220.........230....
Predicted Secondary structure 















...






Query SS confidence 






























. . .

























Query Sequence  DIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . . TDYSIAEAAFNKGETAMTINGPWAWS
Query Conservation 
     
 

   


     
   
     ...         
  

 

 
 
 
   
Alig confidence 






























...

























Template Conservation                

     
                     
  
  
          
Template Sequence  DAKDIGLANDGSIVGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGKTAAIIDGPWKAQ
Template Known Secondary structure  TTSTTS
GGGG
SS
TT

S
GGG
Template Predicted Secondary structure 



























Template SS confidence 



























































   217..220.........230.........240.........250.........260.........270......
 
   235....240.........250... ......260.........270.........280.........290...
Predicted Secondary structure 










.











Query SS confidence 


















.







































Query Sequence  NIDTSKVNYGVTVLPTFKG. QPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEA
Query Conservation           


 

   
.       
     
 
 






  

   
 
 
    
Alig confidence 


















.




























.









Template Conservation                                   
   
   
 
  

 . 
 
 
    
Template Sequence  AFKDAKVNYGVATIPTLPNGKEYAAFGGGKAWVIPQAVKNLEASQKFVD. FLVATEQQKV
Template Known Secondary structure  TT




B
TTS





BTT
S
.S
Template Predicted Secondary structure 


























.

Template SS confidence 



























































   277..280.........290.........300.........310.........320..... ....330.....
 
   294.....300.........310 .........320.........330.........340.........350..
Predicted Secondary structure 










.













Query SS confidence 
















.









































Query Sequence  VNKDKPLGAVALKSYEE. ELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAA
Query Conservation          
    
   .    

      
    
   
 

    
   
  

  
 
Alig confidence 
















.









































Template Conservation       
  
                              
                    
Template Sequence  LYDKTNEIPANTEARSYAEGKNDELTTAVIKQFKNTQPLPNISQMSAVWDPAKNMLFDAV
Template Known Secondary structure 

SS

S



SGGGGGT
Template Predicted Secondary structure 




















Template SS confidence 



























































   336...340.........350.........360.........370.........380.........390.....
 
   353......360.........370...
Predicted Secondary structure 









Query SS confidence 




















Query Sequence  SGRQTVDAALAAAQTNAAAKV
Query Conservation   
  
 



  

  
 
 
Alig confidence 




















Template Conservation   
      

          
Template Sequence  SGQKDAKTAANDAVTLIKETL
Template Known Secondary structure  TTSS

Template Predicted Secondary structure 





Template SS confidence 




















   396...400.........410......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D