Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence68.04%DateSun Sep 7 16:46:09 BST 2014
Rank175Aligned Residues113
% Identity12%Templatec4ovrA_
PDB info PDB header:solute-binding proteinChain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 xanthobacter autotrophicus py2, target efi-510329, with bound beta-d-3 galacturonate
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30... ......40.... .....50.........60....
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Query Sequence  VIWINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGDGPDIIFWA
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Template Sequence  DVQPADYPTVKAVQSXSDELNKETNGKISIKVFPNSQLGSEKDTIEQVKLGAL. DFIRIN
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SS
TTSTTTS

TTTT

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   32.......40.........50.........60.........70.........80.... .....90
 
   65....70.........80.. .......90.........100.........110......
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Query Sequence  HDRFGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSL
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Template Sequence  SGTLNTVCPAXTVPVLPFLFRDKAHXRAVLDGPIGDEILADCASHGLVGLAFYDSGARSF
Template Known Secondary structure  TTT
GGGSTT
SSSSTTGGGT



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   91........100.........110.........120.........130.........140.........150
 
   117..120..
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Query Sequence  IYNKDL
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Template Sequence  YATTPI
Template Known Secondary structure  SS

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   151.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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