Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.81%DateSun Sep 7 16:46:09 BST 2014
Rank106Aligned Residues293
% Identity14%Templatec3cg3A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.. ....... 40.........50........
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Query Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKDT. . . . GIKVTVE. HPDKLEEKFPQVAATGDGP
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Template Sequence  REARLIIFHA. GSLSIPLSQVEEKFTKYAQEKLGVKVTFQDEASGSVKAVRKVTDLKKRA
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   26...30..... ....40.........50.........60.........70.........80....
 
   5960... ......70.........80.. .......90.........100.........110....
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Query Sequence  DIIFW. AHDRFGGYAQSGLLAEITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEAL
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Template Sequence  DIVAVADYTLIPQLMIPNYTDFYVLFATNEIVIAFTNKSKYADEMLKNPDKWYEILSRPD
Template Known Secondary structure  SSSTTTTTTT
S


TTSTT
GGGTT
TT
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   85....90.........100.........110.........120.........130.........140....
 
   115....120.........130.........140.........150.........160.........170....
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Query Sequence  SLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYEN
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Template Sequence  VSFGFSDPNQDPCGYRSVMVMKLAELYYGRPIFKELVEKTTNI. . . . . . YSNGTRIYAPK
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TTT

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TTTTBS
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   145....150.........160.........170.........180....... ..190........
 
   175....180.........190.........200.........210.........220.........230....
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Query Sequence  GKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWS
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Template Sequence  EIIIKDKRVIMRPKETDLVGLVES. . . . . . GSLDYIFIYKSVAKQHHLSYITLPDDINLG
Template Known Secondary structure  S

BSSTTSSTT......TSS
TT


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   199200.........210.........220.. .......230.........240.........250..
 
   235....240.........250.........260.........270.........280.........290....
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Query Sequence  NIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAV
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Template Sequence  DFNKADFYGRVSITLGSTGKTIKAKPIVYGITVLKNAPNRELAIEFLR. FLLGNEGRKIF
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GGGTT
TTT






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   253......260.........270.........280.........290.........300 .........310.
 
   295....300.........310
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Query Sequence  NKDKPLGAVALKSYEE
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Template Conservation     
  
         
Template Sequence  EDNYQEFLSPPVAFGN
Template Known Secondary structure  TT

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   312.......320.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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