Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence34.03%DateSun Sep 7 16:46:09 BST 2014
Rank301Aligned Residues119
% Identity15%Templatec2zzxD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30... ......40..... ....50.........60....
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Query Sequence  VIWINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWA
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Template Sequence  TAWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVL. DGMNPF
Template Known Secondary structure  SS
TTSTTTS
TTSSS
GGGTSS.S
B
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   3040.........3050.........3060.........3070.........3080.........3090.. ......
 
   65....70.........80.. .......90.........100.........110....
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Query Sequence  HDRFGGYAQSGLLAEITP. . . . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEAL
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Template Sequence  TLYWAGRMPVTAFLSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVGPVQHDLN
Template Known Secondary structure  GGGGTTT
GGGGGSS

TTS

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   30993100.........3110.........3120.........3130.........3140.........3150........
 
   115....120.........130...
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Query Sequence  SLIYNKDLLPNPPKTWEEI
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Template Sequence  IIHSKK. . . . . PIRRFEDF
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SGGGG
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   31593160.... .....3170..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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