Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence64.76%DateSun Sep 7 16:46:09 BST 2014
Rank188Aligned Residues195
% Identity16%Templated2liva_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380. ........390.........400.........410.
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Query Sequence  VDAALAAAQTNAAAKVDILGVDFD. . . . . . NTTMLQMVENIKTFFANQSTNNLFIVTANP
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Template Sequence  EFTGAEQAVADINAKGGIKGNKLQIAKYDDACDPKQAVAVANKVVNDG. . IKYVIGHLCS
Template Known Secondary structure  TTTBTTB

TT
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   22.......30.........40.........50.........60......... 70.........
 
   412.......420.........430.........440.........450..... ....460.........
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Query Sequence  EIVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRI. . PGIELMDECLKIAH
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Template Sequence  SST. . . . . . QPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYIL
Template Known Secondary structure  ......TT
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GGGSSS

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   80.. .......90.........100.........110.........120.........130...
 
   470. ........480.........490...... ...500... ......510.........520...
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Query Sequence  VN. . HQKVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKLFK
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Template Sequence  EKVKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKEN
Template Known Secondary structure  TT

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SSTTT



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   134.....140.........150.........160.........170.........180.........190...
 
   524.....530.........540.........550.........560
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Query Sequence  PDYIFVGMGFPKQEEWIMTHENQFESTVMMGVGGSLE
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Template Sequence  IDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVAN
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   194.....200.........210.........220.........230
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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