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Job Descriptionmulti-dom
Confidence37.56%DateSun Sep 7 16:46:09 BST 2014
Rank284Aligned Residues166
% Identity11%Templatec4pf6A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:c4-dicarboxylate-binding protein; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 roseobacter denitrificans (rd1_0742, target efi-510239) with bound 3-3 deoxy-d-manno-oct-2-ulosonic acid (kdo)
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30... ......40.... .....50.........
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Query Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGDGPD
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Template Sequence  DKITLRXSTPASETDQRSVALAEVFAPAVAGFATYQPHYNASLIAQNSELEAIASGDL. E
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   26...30.........40.........50.........60.........70.........80... .
 
   60.........70.........80.. .......90.........100.........110.
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Query Sequence  IIFWAHDRFGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAV
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Template Sequence  XSIASAQELAQFFPEFSIFATGYVHQSAEHQVAVFNDPLXDPFKKTVEDELGIKLLSVXY
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GGGGGGG
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   85....90.........100.........110.........120.........130.........140....
 
   112.......120.... .....130.........140.........150.........160.........170
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Query Sequence  EALSLIYNKDLLP. NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAF
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Template Sequence  LGQRHVNLRQTKEELTVTTPADL. . . . . . . . . . . . AGVNLRXPGTDAWQFLGKALGANPT
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   145....150.........160....... ..170.........180.........190..
 
   171........180.........190....
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Query Sequence  KYENGKYDIKDVGVDNAGAKAGLT
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Template Sequence  P. . . . . . . . . . . . XAFTEIYTALQ
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GGG
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   193 ......200....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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