Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence53.06%DateSun Sep 7 16:46:09 BST 2014
Rank226Aligned Residues188
% Identity10%Templatec3q41B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd)
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370....... ..380.........390.........400.........410....
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Query Sequence  VDAALAAAQTNAAAKVDILG. . . VDFDNTTMLQMVENIKTFFANQSTNNLFIVTANPEIV
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Template Sequence  FREAVNQANKRHGSWKIQLNATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDH
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   42.......50.........60.........70.........80.........90.........100.
 
   415....420.........430.........440.........450.........460.........470...
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Query Sequence  NYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHVNHQ.
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Template Sequence  FTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNWN
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   102.......110.........120.........130.........140.........150.........160.
 
   474.....480.........490...... ...500... ......510.........520.........
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Query Sequence  KVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKLFKPDYIFV
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Template Sequence  HIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTKNVTALLMEARELEARVIIL
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   162.......170.........180.........190.........200.........210.........220.
 
   530.........540.....
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Query Sequence  GMGFPKQEEWIMTHEN
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Template Sequence  SASEDDAATVYRAAAM
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   222.......230.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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