Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence91.42%DateSun Sep 7 16:46:09 BST 2014
Rank135Aligned Residues191
% Identity9%Templatec3i09A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   359360.........370.........380 .........390.........400.........410..
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Query Sequence  DAALAAAQTNAAAKVDILGVDF. . . . . . DNTTMLQMVENIKTFFANQSTNNLFIVTANPE
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Template Sequence  LEAIKXAVADFGGKV. . NGKPIEVVYADHQNKADIAASKAREWXDRG. . GLDLLVGGTNS
Template Known Secondary structure  TS..TT
TT
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   4950.........60... ......70.........80.........90... ......100....
 
   413......420.........430.........440.........450..... ....460.........470
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Query Sequence  IVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRI. . PGIELMDECLKIAHV
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Template Sequence  ATAL. . . . SXNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTXALAKGTGSAVVK
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   105... .110.........120.........130.........140.........150.........160
 
   471.. ......480.........490...... ...500... ......510.........520.....
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Query Sequence  NHQ. KVFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDETVVKRIKLFKPD
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Template Sequence  QGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQ
Template Known Secondary structure  TT

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   161........170.........180.........190.........200.........210.........220
 
   526...530.........540...... ...550.......
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Query Sequence  YIFVGMGFPKQEEWIMTHENQ. FESTVMMGVGG
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Template Sequence  ILGLANAGGDTVNAIKAAKEFGITKTXKLAALL
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   221........230.........240.........250...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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