Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank42Aligned Residues373
% Identity29%Templatec2zykA_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10........ .20.........30......... 40.........50.........
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Query Sequence  EEGKLVIWINGDKGY. . NGLAEVGKKFEKDTGIKVTVE. . HPDKLEEKFPQVAATGDGPD
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Template Sequence  KPDKLVVWENADDGVQLNNTKKWAGEFTKKTGIQVEVVPVALLKQQEKLTLDGPAGKGAD
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TTTGGGT
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   17..20.........30.........40.........50.........60.........70......
 
   60.........70.........80.........90.........100.........110.........
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Query Sequence  IIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYN
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Template Sequence  LVTWPHDRLGEAVTKGLLQPIQVDNSVKNQFDDVAMKALTYGGKLYGLPKAIESVALIYN
Template Known Secondary structure  GGGTTTT





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   77..80.........90.........100.........110.........120.........130......
 
   120.........130.........140.... .....150.........160.........170.......
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Query Sequence  KDLLPNPPKTWEEIPALDKELKAKG. . KSALMFNLQEPYFTWPLIAADGGYAFKYENGKY
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Template Sequence  KKLMGQVPATYDELFQYAKANNKPDEQKYGVLFEANNFYYTYFLFAAKGAAVFKEQDGTL
Template Known Secondary structure  TTT
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SB
BTTTTB
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   137..140.........150.........160.........170.........180.........190......
 
   178.180.........190.........200.........210.........220.........230.......
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Query Sequence  DIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNID
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Template Sequence  DPNEIGLNSPEAVQGMNEVQKWFTEARLPQSLKADTVNGLFKSGKVAAVINGPWAIKDYQ
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TTSTS


TT

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   197..200.........210.........220.........230.........240.........250......
 
   238.240.........250.........260.........270.........280.........290.......
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Query Sequence  TSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD
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Template Sequence  AAGINVGVAPLPKIDGKDAQTFIGVKGWYLSAYSKYPKYATELMQ. FLTSKEALASRFKE
Template Known Secondary structure  TT




BSSSS



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   257..260.........270.........280.........290.........300. ........310.....
 
   298.300.........310 .........320.........330.........340.........350......
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Query Sequence  KPLGAVALKSYEE. ELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQ
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Template Sequence  TGEIPPQKELLNDPMIKNNPVVNGFAKQASKGVPMPSIPEMGVVWEPINNAHTFVAQGKQ
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   316...320.........330.........340.........350.........360.........370.....
 
   357..360.........370.......
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Query Sequence  TVDAALAAAQTNAAAKVDILG
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Template Sequence  TPEQALNDAVKIMKEKIQTMK
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   376...380.........390......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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