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Job Descriptionmulti-dom
Confidence91.77%DateSun Sep 7 16:46:09 BST 2014
Rank133Aligned Residues232
% Identity16%Templatec3k2dA_
PDB info PDB header:immune systemChain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60..
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Query Sequence  IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIF
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Template Sequence  MDTSKVKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYV. TPNAALDDGSI. DMNA
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   28.30.........40.........50.........60.........70 .........80. ....
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  WAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL
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Template Sequence  FQHKPYLDRQVEDRDY. . . . . . . . . . . . . . . . . . . . . . . . KLTIAGNTFVYPIAGY. . . .
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   86...90.........100. ........110.......
 
   123......130.........140.........150.........160.........170.........180..
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Query Sequence  LPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDV
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Template Sequence  . SKQVKSVAAL. . . . . . . . ADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVR
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SS
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   118.120....... ..130.........140.........150.........160........
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  GVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVN
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Template Sequence  DIVE. . . . . . . . . . . . . . . NPKNITIMELDAAQLPRSLDDVALSIINTTYASSINLTPEK
Template Known Secondary structure  G...............
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GGGTTTSS
GGGT

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   169170.. .......180.........190.........200.........210...
 
   243......250.........260.........270.........280.........290......
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Query Sequence  YGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNK
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Template Sequence  DGVFV. . . . . . . EDKESPYVNLIVARQDNVQNENVQNFVK. AYQTEEVYTAAKE
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   214.... .220.........230.........240...... ...250.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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