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Job Descriptionmulti-dom
Confidence67.23%DateSun Sep 7 16:46:09 BST 2014
Rank176Aligned Residues244
% Identity12%Templatec3l6gA_
PDB info PDB header:glycine betaine-binding proteinChain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60....
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Query Sequence  EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWA
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Template Sequence  DKKVDLVYMNWDSEVASINVLTQAMKEHGFDVKTTAL. DNAV. AWQTVANGQA. DGMVSA
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   320.........330.........340.........350...... ...360 .........370 ......
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  HDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP
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Template Sequence  WL. . . . . . . . . . . . . . . . . . . . . PNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSYM. .
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   377. .380.........390.........400.........410...
 
   125....130.........140.........150.........160.........170.........180....
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Query Sequence  NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGV
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Template Sequence  . NVNSIEDL. . . . . . . . TNQANKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVPSSS. .
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   414.....420. ........430.........440.........450.........460..
 
   185....190.........200.........210.........220.........230.........240....
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Query Sequence  DNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . GAMTVALGEAIKQHKDIVITGWSPHWMFNKY. . . DLK
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   463......470.........480.........490... ...
 
   245....250.........260.........270 .........280.........290.........300..
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Query Sequence  VTVLPTFKGQPSKPFVGVLSAGINAA. . SPNKELAKEFLENYLLTDEGLEAVNKDKPLGA
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Template Sequence  YLADP. . . . KGTMGTSENINTIVRKGLKKENPEAYKVLDK. FNWTTKDMEAVMLDIQNGK
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   497..500. ........510.........520.........530.. .......540.........550.
 
   303......310......
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Query Sequence  VALKSYEEELAKDP
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Template Sequence  TPEEAAKNWIKDHQ
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   552.......560.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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