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Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank59Aligned Residues363
% Identity17%Templatec4mfiA_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:sn-glycerol-3-phosphate abc transporter substrate-binding PDBTitle: crystal structure of mycobacterium tuberculosis ugpb
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.. .......20.........30. ........40. ........50.....
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Query Sequence  KIEEGKLVIWI. NGDKGYNGLAEVGKKFEKD. TGIKVTVEHP. . . . DKLEEKFPQVAATG
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Template Sequence  KSGSGPIDFWSSHPGQSSAAERELIGRFQDRFPTLSVKLIDAGKDYDEVAQKFNAALIGT
Template Known Secondary structure  B
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TTT
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   33......40.........50.........60.........70.........80.........90..
 
   56...60.........70.........80.. .......90.........100.........110.
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Query Sequence  DGPDIIFWAHDRFGGYAQSGLLAEITP. . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAV
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Template Sequence  DVPDVVLLDDRWWFHFALSGVLTALDDLFGQVGVDTTDYVDSLLADYEFNGRHYAVPYAR
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STTTT
B


T

GGGB
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   93......100.........110.........120.........130.........140.........150..
 
   112.......120..... ....130.........140.........150. ........160
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Query Sequence  EALSLIYNKDLLPN. . . . . . PPKTWEEIPALDKELKAKGKSALMFN. . . . . LQEPYFTWP
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Template Sequence  STPLFYYNKAAWQQAGLPDRGPQSWSEFDEWGPELQRVVGAGRSAHGWANADLISWTFQG
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TT

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TT
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   153......160.........170.........180.........190.........200.........210..
 
   161........170.........180.........190.........200.........210.........220
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Query Sequence  LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNK
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Template Sequence  PNWAFGGAYSDKW. . . . . . . TLTLTEPATIAAGNFYRNSIHGKGYAA. . VANDIANEFAT
Template Known Secondary structure  TT

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TTSTTS

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   213......220..... ....230.........240.........250.. .......260...
 
   221........230...... ...240.........250.........260....... ..270.......
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Query Sequence  GETAMTINGPWAWSNI. DTSKVNYGVTVLPTFKGQPSKPFVGVLSAGI. . NAASPNKELA
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Template Sequence  GILASAVASTGSLAGITASARFDFGAAPLPTGPDAAPACPTGGAGLAIPAKLSEERKVNA
Template Known Secondary structure  TSBSGGG

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   264.....270.........280.........290.........300.........310.........320...
 
   278.280.........290.........300.........310 .........320.........330..
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Query Sequence  KEFLENYLLTDEGLEAVNKDKPLGAVALKSYEE. . . . . ELAKDPRIAATMENAQKGEIMP
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Template Sequence  LKFIA. FVTNPTNTAYFSQQTGYLPVRKSAVDDASERHYLADNPRARVALDQLPHTRTQD
Template Known Secondary structure  .TSS



BGGGGGS
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   324.... .330.........340.........350.........360.........370.........380..
 
   333.... ..340.........350.........360.........370....
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Query Sequence  NIPQM. SAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAKVD
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Template Conservation                        
      

          
 
Template Sequence  YARVFLPGGDRIISAGLESIGLRGADVTKTFTNIQKRLQVILD
Template Known Secondary structure  TSTT


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   383......390.........400.........410.........420.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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