Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence87.77%DateSun Sep 7 16:46:09 BST 2014
Rank139Aligned Residues222
% Identity12%Templated1tjya_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380.........390.........400.........410.......
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Query Sequence  VDAALAAAQTNAAAKVDILGVDFDNTTMLQMVENIKTFFANQSTNNLFIVTANPEIVNYA
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Template Sequence  GGNGAQEAGKALGIDVTYDG. . PTEPSVSGQVQLVNNFVNQGY. DAIIVSAVSPDGLCP.
Template Known Secondary structure  T


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   45....50.........60.... .....70.........80..... ....90.........100
 
   418.420.........430.........440.........450.........460.........470.......
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Query Sequence  TTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHVNHQKVFL
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Template Sequence  . . . ALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAF
Template Known Secondary structure  ...TT
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   101........110.........120.........130.........140.........150.......
 
   478.480.. .......490.........500... ......510... ......520...... .
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Query Sequence  LGATN. . . . . . EVVEAAQYALQQRYPNISFAH. HHGYIDLEDE. TVVKRIKLFKPDY. . I
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Template Sequence  FYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAI
Template Known Secondary structure  S
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TT
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   158.160.........170.........180.........190.........200.........210.......
 
   528.530.........540.........550........ .560.........570.........
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Query Sequence  FVGMGFPKQEEWIMTHENQFESTVMMGVGGS. . . . . . . . LEVFAGAKKRAPYIFRKLNIE
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Template Sequence  IAPDANALPAAAQAAENLKRNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVY
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STTTT

S
B

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   218.220.........230.........240.........250.........260.........270.......
 
   580......
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Query Sequence  WIYRALI
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Template Sequence  VANALLK
Template Known Secondary structure  T
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   278.280....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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