Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank80Aligned Residues329
% Identity18%Templated1a99a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60....
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Query Sequence  EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWA
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Template Sequence  QKTLHIYNWSDYIA. . . PDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPS
Template Known Secondary structure 

TT
S
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S

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   2930.........40.. .......50.........60.........70.........80.....
 
   65....70.........80.. .......90......... 100.........110.........120.
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Query Sequence  HDRFGGYAQSGLLAEITP. DKAFQDKLYPFTWDAVR. . YNGKLIAYPIAVEALSLIYNKD
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Template Sequence  ASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVD
Template Known Secondary structure  TT
B



GGG
GGGGGB
TTSGGG
S
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   86...90.........100.........110.........120.........130.........140.....
 
   122... ....130.........140.........150.........160.........170.....
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Query Sequence  LLPN. . . . . . PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENG
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Template Sequence  KVKAVLGENAPVDSWDLILKPENLEKLKSCG. VSFLDAPEEVFATVLNYLGKDPNSTK. .
Template Known Secondary structure 
TT

TTSTSGGG
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TTS
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   146...150.........160.........170...... ...180.........190.........200..
 
   176...180.........190.........200.........210.........220.........230.....
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Query Sequence  KYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSN
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Template Sequence  . . . . . . . . . ADDYTGPATDLLLKLRPNIR. . . YFHSSQYINDLANGDICVAIGWAGDVWQ
Template Known Secondary structure  .........TGGG

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   203......210.........220.. .......230.........240.........250
 
   236...240.........250.........260.........270.........280.........290.....
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Query Sequence  IDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVN
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Template Sequence  ASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLN. YLLRPDVVAHIS
Template Known Secondary structure  T
S



TT

BTT
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   251........260.........270.........280.........290....... ..300.........
 
   296...300......... 310.........320.........330.........340.........350..
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Query Sequence  KDKPLGAVALKSYE. . . EELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAA
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Template Sequence  DHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTLKVQD. . PKIDRVRTRAWTKVK
Template Known Secondary structure 

SBTTTGGGS
T
TTTS

TT





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   310.........320.........330.........340.........350.. .......360.......
 
   353.
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Query Sequence  SG
Query Conservation   
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Template Conservation 

Template Sequence  SG
Template Known Secondary structure 
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   368.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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