Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank57Aligned Residues371
% Identity17%Templatec4aq4A_
PDB info PDB header:diester-binding proteinChain: A: PDB Molecule:sn-glycerol-3-phosphate-binding periplasmic protein ugpb; PDBTitle: substrate bound sn-glycerol-3-phosphate binding periplasmic protein2 ugpb from escherichia coli
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  IEEGKLVIWINGDKGY. NGLAEVGKKFEKD. TGIKVTVEH. . . PDKLEEKFPQVAATGDG
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Template Sequence  HMVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNA
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   -10.........10.........20.........30.........40.........50........
 
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Query Sequence  PDIIFWAHDRFGGYAQSGLLAEITPDKAFQDK. . . . . . . . LYPFTWDAVRYNGKLIAYPI
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Template Sequence  PAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPF
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   5960.........70.........80.........90.........100.........110........
 
   110.........120...... ...130.........140.........150.........160..
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Query Sequence  AVEALSLIYNKDLLPNP. . . . . . . PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLI
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Template Sequence  NSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENF
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   119120.........130.........140.........150.........160.........170........
 
   163......170....... ..180.........190.........200.........210.........220
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Query Sequence  AADGGYAFKYENGKY. . DIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNK
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Template Sequence  SAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYN
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   179180.........190.........200.........210.........220.........230........
 
   221........230........ .240.........250.. .......260.........270....
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Query Sequence  GETAMTINGPWAWSNIDT. SKVNYGVTVLPTFK. . . . . GQPSKPFVGVLSAGINAASPNK
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Template Sequence  GDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETY
Template Known Secondary structure  TSGGG

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   239240.........250.........260.........270.........280.........290........
 
   275....280.........290.........300.........310.. .......320.........
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Query Sequence  ELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEEL. . . . . AKDPRIAATMENAQKGE
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Template Sequence  TGVAKFLD. FLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKP
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   299300...... ...310.........320.........330.........340.........350.......
 
   330.... .....340.........350.........360.........370....
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Query Sequence  IMPNI. . . . . PQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAKVD
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Template Sequence  PLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLR
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   358.360.........370.........380.........390.........400.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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