Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence20.72%DateSun Sep 7 16:46:09 BST 2014
Rank392Aligned Residues125
% Identity17%Templatec2hpgB_
PDB info PDB header:ligand binding proteinChain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10 .........20.........30... ......40.... .....50......
Predicted Secondary structure 

...







..


..


Query SS confidence 






. . .






















. .










. .











Query Sequence  EEGKLVI. . . WINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGD
Query Conservation 
 
 
 
...
         
      


  
..


     

 ..  

  
  

 
Alig confidence 






...






















..










..











Template Conservation     


     
           
   
 
 
 
 
 
 
   
 

   
   

  
 
Template Sequence  AKYTLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRXGA
Template Known Secondary structure 
S



TTSTTTTS




TTTTT
Template Predicted Secondary structure 



















Template SS confidence 



























































   22.......30.........40.........50.........60.........70.........80.
 
   57..60.........70.........80.. .......90... .....
Predicted Secondary structure 












..................
Query SS confidence 

























. . . . . . . . . . . .










. . . . . .




Query Sequence  GPDIIFWAHDRFGGYAQSGLLAEITP. . . . . . . . . . . . DKAFQDKLYPF. . . . . . TWDAV
Query Conservation   


              
 
 

  ............     
     ......     
Alig confidence 
.























............










......




Template Conservation 
.
             
      




                                
Template Sequence  P. VGWNTDSARLGXYVKDIGVXNLAYFIDFXGAKTPEEAIEVLKKIKQSPTXQKWLKELE
Template Known Secondary structure  S.TTTSGGGGGGGSTTTT

SS
Template Predicted Secondary structure 
.

























Template SS confidence 



























































   82 .......90.........100.........110.........120.........130.........140
 
   99100.........110.........120.........130...
Predicted Secondary structure 









Query SS confidence 


































Query Sequence  RYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEI
Query Conservation    


 



       
 





 


 




Alig confidence 





















....








Template Conservation     
   
              .... 

 
  

Template Sequence  QRFGIKVLSFYWVQGYRHFVTN. . . . KPIRKPEDL
Template Known Secondary structure 
S....S


SGGGG
Template Predicted Secondary structure 









....




Template SS confidence 


































   141........150.........160.. .......170.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D