Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence64.98%DateSun Sep 7 16:46:09 BST 2014
Rank185Aligned Residues124
% Identity16%Templatec4o94B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:trap dicarboxylate transporter dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodopseudomonas palustris haa2 (rpb_3329), target efi-510223, with3 bound succinate
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10 .........20.........30... ......40.... .....50......
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Query Sequence  EEGKLVI. . . WINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGD
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Template Sequence  QPIVVKFSHVVADNTPKGQAAIKFKELAEKYTNGKVKVEVYPNSQLFGDAKEXEAVALGD
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   25....30.........40.........50.........60.........70.........80....
 
   57..60.........70.........80.. .......90.........100........
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Query Sequence  GPDIIFWAHDRFGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYP
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Template Sequence  V. QFIAPSLSKFDKFTKQIQVFDLPFLFNDIAAVDRFQAGKQGQALLRSXESKNFLGLAY
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BGGG
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   85 ....90.........100.........110.........120.........130.........140...
 
   109110.........120.........130...
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Query Sequence  IAVEALSLIYNKDLLPNPPKTWEEI
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Template Sequence  WHNGXKQISANR. . . . . PLLKPEDA
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   144.....150..... ....160...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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