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Job Descriptionmulti-dom
Confidence98.49%DateSun Sep 7 16:46:09 BST 2014
Rank121Aligned Residues249
% Identity17%Templatec3cvgD_
PDB info PDB header:metal binding proteinChain: D: PDB Molecule:putative metal binding protein; PDBTitle: crystal structure of a periplasmic putative metal binding protein
Resolution1.97 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30. ........40.........50.........60...
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKD. . . TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW
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Template Sequence  QLRIGNGGAGQSGLVKELADAFIKSKVDSGFKVAWYKSDT. . TVTINYLKDGIVDVGITY
Template Known Secondary structure  STS




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   3940.........50.........60.........70........ .80.........90......
 
   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  AHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL
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Template Sequence  SPVAERISIKHGISESPSYY. . . . . . . . . . . . . . . AFRDHFXLIGPPSNPAKLSGDSDIA
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TT
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   100.........110......... 120.........130.........140....
 
   124 .....130.........140.........150.........160.........170.........180.
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Query Sequence  P. . NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
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Template Sequence  DXFSKXHDAAEA. . . . . . . GNTKPPVRFLSRYDKSATNIKEAELWLSIGQVPWATAYSTW
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SSSTTT

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   145....150...... ...160.........170.........180.........190.......
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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Template Sequence  YHQYITFPIQALTAA. . . . . . . . . . . . . . . . . . . . . . . ILLREYTITDYGTYLSIPRGLR
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   198.200.........210.. .......220.........230....
 
   242.......250.........260.........270.........280.........290.........
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Query Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKP. .
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Template Sequence  DQXVIYKK. GTNDADDPLLNPAHLLVGARAKNAEXAKEFAK. WLVSKEGGQKVIEGFKKD
Template Known Secondary structure  TT
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   235....240.. .......250.........260.........270.... .....280.........290..
 
   300....
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Query Sequence  . . . . LGAVA
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Template Sequence  GQQLYSPAP
Template Known Secondary structure  T



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   293......300.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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