Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence57.05%DateSun Sep 7 16:46:09 BST 2014
Rank215Aligned Residues120
% Identity13%Templatec4pfbA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:c4-dicarboxylate-binding protein; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 fusobacterium nucleatun (fn1258, target efi-510120) with bound sn-3 glycerol-3-phosphate
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30... ......40.... .....50.........60....
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Query Sequence  VIWINGDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGDGPDIIFWA
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Template Sequence  TKFVDDEQTAKSLVKVVEAINQRSNGTLELQLFTSGTLPIGKDGMEQVANGSD. WILVDG
Template Known Secondary structure  S

TTSTTTS
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   31........40.........50.........60.........70.........80... ......
 
   65....70.........80.. .......90.........100.........110......
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Query Sequence  HDRFGGYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSL
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Template Sequence  VNFLGDYVPDYNAVTGPMLYQSFEEYLRMVKTPLVQDLNAQALEKGIKVLSLDWLFGFRN
Template Known Secondary structure  GGGGGGTSTTT
TT

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   90.........100.........110.........120.........130.........140.........
 
   117..120.........130...
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Query Sequence  IYNKDLLPNPPKTWEEI
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Template Sequence  IEA. . . . KKPIKTPEDM
Template Known Secondary structure  ....SS

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   150.. .......160..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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