Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence23.05%DateSun Sep 7 16:46:09 BST 2014
Rank368Aligned Residues115
% Identity14%Templatec4n91A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 anaerococcus prevotii dsm 20548 (apre_1383), target efi-510023, with3 bound alpha/beta d-glucuronate
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKLE. . EKFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  NHPTHLGLLAFEEYVEDKLGDKYDIQVYPSELLGSQIDXVQLTQTGAI. NICVASNAILE
Template Known Secondary structure  TSTTT
TTTT
STSS.ST
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   42.......50.........60.........70.........80......... 90.........100
 
   70.........80. ........90.........100.........110.........120
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Query Sequence  GYAQSGLLAEIT. . . . . . . . . PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK
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Template Sequence  TFNDVWEIFNLPYLFASSEAYHHVXDDPEIVKPIFESTREGGFEGVTWLDAGSRSFYTKD
Template Known Secondary structure  TT
GGGGGGG
TT

SST
TTTGGGT



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   101........110.........120.........130.........140.........150.........160
 
   121........130...
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Query Sequence  DLLPNPPKTWEEI
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Template Sequence  . . . . KPVNSPEDL
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SSGGGG
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   161........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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