Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank34Aligned Residues381
% Identity95%Templatec3a3cA_
PDB info PDB header:protein transportChain: A: PDB Molecule:maltose-binding periplasmic protein, linker, mitochondrial PDBTitle: crystal structure of tim40/mia40 fusing mbp, c296s and c298s mutant
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60...
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Query Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW
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Template Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW
Template Known Secondary structure 
TTS


TTS
S




TTTT
S
S
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   3......10.........20.........30.........40.........50.........60..
 
   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  AHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL
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Template Sequence  AHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL
Template Known Secondary structure  GGGTT
B





TTTTTSB
TTTT
S

TTT
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   63......70.........80.........90.........100.........110.........120..
 
   124.....130.........140.........150.........160.........170.........180...
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Query Sequence  PNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVG
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Template Sequence  PNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVG
Template Known Secondary structure  SS

SBSTTSTTTTTTT

S



SSSTTTT



TTS

TT
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   123......130.........140.........150.........160.........170.........180..
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  VDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNY
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Template Sequence  VDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNY
Template Known Secondary structure  SSSSSSS
S


TS
SS
GGGTT

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   183......190.........200.........210.........220.........230.........240..
 
   244.....250.........260.........270.........280.........290.........300...
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Query Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV
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Template Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV
Template Known Secondary structure 


BSSSS



BTT
S
TTSSTTS


SB
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   243......250.........260.........270.........280.........290.........300..
 
   304.....310.........320.........330.........340.........350.........360...
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Query Sequence  ALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALA
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Template Sequence  ALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALK
Template Known Secondary structure  SBTTTTSS


STTTTTSS
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   303......310.........320.........330.........340.........350.........360..
 
   364.....370.........380....
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Query Sequence  AAQTNAAAKVDILGVDFDNTT
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Template Sequence  DAQTNSSSVPGRGSIEGRPEF
Template Known Secondary structure  S

S
SSGGGG
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   363......370.........380...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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