Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.67%DateSun Sep 7 16:46:09 BST 2014
Rank107Aligned Residues271
% Identity15%Templated1sbpa_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30. ........40.........50.........
Predicted Secondary structure 







....










Query SS confidence 



























. . . .



























Query Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKD. . . . TGIKVTVEHPDKLEEKFPQVAATGDGPD
Query Conservation 
 
 
 

         
      


 .... 



     

   

  
  

  

Alig confidence 










.















....



























Template Conservation      
      .        
   
       


 
 
      
      
  
   
Template Sequence  KDIQLLNVSYD. PTRELYEQYNKAFSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEAD
Template Known Secondary structure 

S.TTS
S
TT


S
Template Predicted Secondary structure 



.













Template SS confidence 



























































   1........10. ........20.........30.........40.........50.........
 
   60... ......70.........80.........90.........100.........110........
Predicted Secondary structure  .














Query SS confidence 



.






















































Query Sequence  IIFW. AHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY
Query Conservation 
   .           
 
 

       
            


 



       
 
Alig confidence 



.
























..................











Template Conservation 
           
   
             ..................            
Template Sequence  TVTLALAYDVNAIAERGRIDKNWIKRLPDD. . . . . . . . . . . . . . . . . . SAPYTSTIVFLV
Template Known Secondary structure  SSTTSS
TTGGGGS..................
SB
Template Predicted Secondary structure 
















..................
Template SS confidence 



























































   60.........70.........80......... 90.........100.
 
   119120.........130.........140.........150.........160.........170........
Predicted Secondary structure 





















Query SS confidence 



























































Query Sequence  NKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYD
Query Conservation 




 


 




   




  
                 
   

       
  
Alig confidence 


.










......






























........
Template Conservation     .       
 

......                 
             ........
Template Sequence  RKG. NPKQIHDWNDL. . . . . . IKPGVSVITPNPKSSGGARWNYLAAWGYALH. . . . . . . .
Template Known Secondary structure  TT.
TT


SGGGG......GSTT




TTT
........
Template Predicted Secondary structure 

.






......












........
Template SS confidence 



























































   102.. .....110..... ....120.........130.........140......
 
   179180.........190.........200.........210.........220.........230........
Predicted Secondary structure 






















Query SS confidence 



























































Query Sequence  IKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT
Query Conservation       
 

   


     
   
              
  

 

 
 
 
       
Alig confidence  .....






















































Template Conservation  .....               
                     
                 
Template Sequence  . . . . . HNNNDQAKAEDFVKALFKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLATN
Template Known Secondary structure  .....TTT
T

SSTS


S
Template Predicted Secondary structure  .....


















Template SS confidence 



























































   147..150.........160.........170.........180.........190.........200.
 
   239240.........250.........260.........270.........280.........290........
Predicted Secondary structure 























Query SS confidence 



























































Query Sequence  SKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK
Query Conservation       


 

   
       
     
 
 






  

   
 
 
         
Alig confidence 










.































.












.
Template Conservation           
 .
                 
      

  

 .



 
 
 
 
 . 
Template Sequence  ELGKDKFEIVT. PSESILAEPTVSVVDKVVEKKDTKAVAEAYLK. YLYSPEGQEIAAK. N
Template Known Secondary structure  TTTTTT
.
S
B


T
.GGGS.T
Template Predicted Secondary structure 





.














.

.
Template SS confidence 



























































   202.......210.. .......220.........230.........240.... .....250....... .
 
   299300.........310......
Predicted Secondary structure 











Query SS confidence 

















Query Sequence  PLGAVALKSYEEELAKDP
Query Conservation     
    
       

Alig confidence 

















Template Conservation 
  

   
         
Template Sequence  FYRPRDADVAKKYDDAFP
Template Known Secondary structure  T
S
TGGGS
Template Predicted Secondary structure 







Template SS confidence 

















   259260.........270......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D