Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence63.73%DateSun Sep 7 16:46:09 BST 2014
Rank190Aligned Residues114
% Identity18%Templatec4ln5A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 burkholderia ambifaria (bamb_6123), target efi-510059, with bound3 glycerol and chloride ion
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30... ......40.... .....50.........60.........
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Query Sequence  GDKGYNGLAEVGKKFEKDTG. . IKVTVEHPDKL. . EEKFPQVAATGDGPDIIFWAHDRFG
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Template Sequence  SFPTNMAVKFMGDELSKLTGGKDSIKVFGNSALGSEKDTVDQVRIGAI. DMARVNGASFN
Template Known Secondary structure  TSTTTTS

TTTT

TSS.SGGGGT
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   38.40.........50.........60.........70.........80..... ....90......
 
   70.........80.. .......90.........100.........110.........120.
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Query Sequence  GYAQSGLLAEITP. . . . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
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Template Sequence  EIVPESLIPSFPFLFRDVDHFRKAMYGPAGQKILDAFAAKGMIALTFYESGARSIYAKR.
Template Known Secondary structure  TT
GGGGGGGSTT


STSTTGGGT



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   97..100.........110.........120.........130.........140.........150.....
 
   122.......130...
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Query Sequence  LLPNPPKTWEEI
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Template Sequence  . . . . PVRTPADM
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   156...160...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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