Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank69Aligned Residues358
% Identity16%Templatec2w7yA_
PDB info PDB header:sugar-binding proteinChain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide.
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KLVIWIN. . . . . . GDKGYNGLAEVGKKFEK. DTGIKVTVEH. PDKLEEKFPQVAATGDGP
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Template Sequence  VLEFYHGYHHSEDEWPVAKTXRDLYDKFAEEHSGVEFKPTPVNGDLKDIXNNKVASGEFP
Template Known Secondary structure  S



TTT



S
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   3940.........50.........60.........70.........80.........90........
 
   5960.........70 .........80.. .......90.........100.........110.....
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Query Sequence  DIIFWAHDRFGG. YAQSGLLAEITP. . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALS
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Template Sequence  DVIDLAGNAVSLAAIEQKLVLDLKPYIDSNKLEKNVGLNYKQNQKDGKIYTVHEQLFTXG
Template Known Secondary structure  S
TT



TT
B


TT
TTTTT

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SB

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   99100.........110.........120.........130.........140.........150........
 
   116...120...... ...130.........140... ......150.........160.......
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Query Sequence  LIYNKDLLPNP. . . . . . . PKTWEEIPALDKELKAK. GKSALMFNLQEPYFTWPLIAADGG
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Template Sequence  LWYNKDIFAKAGAKTPDQWNTWDDFTQAXASIRKQDGVYAFGAGEPSIRLFNTVLGTTEN
Template Known Secondary structure  T


GGG

STSSS


BTTTTS
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   159160.........170.........180.........190.........200.........210........
 
   168.170.........180.........190.........200......... 210.........220......
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Query Sequence  YAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADT. DYSIAEAAFNKGETAMT
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Template Sequence  GRKLLDK. . . PLTKEGIESKEFADALKXVXKEIQANGSKNAGGDANAYSKDFQEGKSAVF
Template Known Secondary structure  TTS...


TTTTTST
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   219220..... ....230.........240.........250.........260.........270.....
 
   227..230.........240.........250.........260.........270.........280......
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Query Sequence  INGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLL
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Template Sequence  FNGVWASGEXSK. NPSLAPGIYP. . AGVAISSSGGGITISSKXSEAKQKLALEFLK. YXT
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GGGTT.STT
BG..GG



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   276...280....... ..290....... ..300.........310.........320........ .330.
 
   287..290.........300.........310... ......320.........330.......
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Query Sequence  TDEGLEAVNKDKPLGAVALKSYEEELA. . . KDPRIAATMENAQKGEIMPNIPQM. . . . . .
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Template Sequence  SDDVQKVIFEKVGANPSNENVNVKELSEKSSEATTKILGQAITQVKNAKAVVPTVSDVWG
Template Known Secondary structure  STS
S
BS
TTS
T


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   332.......340.........350.........360.........370.........380.........390.
 
   338.340.........350.........360.........370.
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Query Sequence  SAFWYAVRTAVINAASGRQTVDAALAAAQTNAAA
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Template Sequence  GDVHTAIINALTESAAENVDVDQKVKSTQDVLKS
Template Known Secondary structure  TTSTT

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   392.......400.........410.........420.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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