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Job Descriptionmulti-dom
Confidence95.92%DateSun Sep 7 16:46:09 BST 2014
Rank125Aligned Residues242
% Identity11%Templatec4q5tA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:lipoprotein; PDBTitle: crystal structure of an atmb (putative membrane lipoprotein) from2 streptococcus mutans ua159 at 1.91 a resolution
Resolution1.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10 .........20.........30.........40.........50.........60
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Query Sequence  KIEEGKLVI. WINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDI
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Template Sequence  KNDKNTLTVGVXTXTDSDKERWDKIEELLKKENIKLKFKEFTDYS. QPNKALKNGEI. DI
Template Known Secondary structure  GG
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   26...30.........40.........50.........60.........70 .........80. ..
 
   61........70.........80.........90.........100.........110.........120
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Query Sequence  IFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNK
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Template Sequence  NSFQHYNFLNNWNKENKGDL. . . . . . . . . . . . . . . . . . . . . . . VTVAETYISPINLFSGT
Template Known Secondary structure  T


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   84.....90.........100... ......110.........120
 
   121........130.........140.........150.........160.........170.........180
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Query Sequence  DLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIK
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Template Sequence  ENGKAKYSSAKEI. . . . . . . . PNGGQIAIPNDATNESRALYVLQDAGLIKLNVSGDELAT
Template Known Secondary structure  TTS
SSGGGS........
TT

STTS
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   121........130... ......140.........150.........160.........170..
 
   181........190.........200.........210.........220.........230.........240
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Query Sequence  DVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK
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Template Sequence  VKNIKS. . . . . . . . . . . . . . . NPKNLDIKEVDASQTARNLASVDAAVVNNSYAVPAKIDF
Template Known Secondary structure  GGG...............
TT


GGGTTTSS
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   173..... .180.........190.........200.........210.......
 
   241........250.........260.........270 .........280.........290.......
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Query Sequence  VNYGVTVLPTFKGQPSKPFVGVLSAGINAA. . . SPNKELAKEFLENYLLTDEGLEAVNKD
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Template Sequence  KTSLYKEKV. . . . . NEGSKQWINIIAAQKNWKKSKKAAAIKKLIK. AYHTDAVKKVIKKT
Template Known Secondary structure  GG


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TTGGGSTT.TS
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   218.220...... ...230.........240.........250....... ..260.........270.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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