Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence99.66%DateSun Sep 7 16:46:09 BST 2014
Rank108Aligned Residues229
% Identity13%Templated1atga_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60... ..
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Query Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW. AH
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Template Sequence  ELKVVTATN. FLGTLEQLAGQFAKQTGHAVVISSGS. . SGPVYAQIVNGAPYNVFFSADE
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GG.G



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S
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   2.......10 .........20.........30...... ...40.........50........
 
   66...70.........80.........90.........100.........110.........120.....
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Query Sequence  DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN
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Template Sequence  KSPEKLDNQGFALPGSR. . . . . . . . . . . . . . . . . . . . . . . . FTYAIGKLVLWSAKP. . GL
Template Known Secondary structure  TT
B
TT

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SST..TT
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   5960.........70..... ....80.........90 ..
 
   126...130.........140.........150.........160.........170.........180.....
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Query Sequence  PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD
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Template Sequence  VDNQGKVLAG. . . . . NGWRHIAISNPQIAPYGLAGT. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
TTSGGGGS.....SS
S

TTT
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   93......100.. .......110.........120...
 
   186...190.........200.........210.........220.........230.........240.....
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Query Sequence  NAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV
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Template Sequence  . . QVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPGSHW
Template Known Secondary structure  ..TT
TT
SSTTSSSGGGT

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   124.....130.........140.........150.........160.........170.........180.
 
   246...250.........260.........270.........280.........290.........300..
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Query Sequence  TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGA
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Template Sequence  FPPA. . . . . . NYYEPIVQQAVITKSTAEKANAEQFMS. WMKGPKAVAIIKAAGYVLP
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G......GGS


BTT
S
.TTSTT
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   182... ....190.........200.........210.. .......220.........230.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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