Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence20.63%DateSun Sep 7 16:46:09 BST 2014
Rank393Aligned Residues192
% Identity11%Templatec3eafA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370....... ..380 .........390.........400.......
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Query Sequence  VDAALAAAQTNAAAKVDILG. . . . VDF. . . . . . DNTTMLQMVENIKTFFANQSTNNLFIV
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Template Sequence  YSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRY. . GVIAII
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   65....70.........80.........90.........100.........110...... ...120..
 
   408.410.........420.........430.........440.........450......... 460....
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Query Sequence  TANPEIVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIE. . . LMDEC
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Template Sequence  GWGTADT. . . . . . EKLSDQVDTDKITYISASY. . . SAKLLVKPFNFYPAPDYSTQACSGL
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GGGTTSTT
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   123...... 130.........140........ .150.........160.........170...
 
   465....470.... .....480.........490...... ...500... ......510... ...
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Query Sequence  LKIAHVNHQK. . VFLLGATNEVVEAAQYALQQRY. . PNISFAH. . HHGYIDLEDE. . TVV
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Template Sequence  AFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIA
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TTTGGGT

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   174.....180.........190.........200.........210.........220.........230...
 
   517..520.........530.........540.........550.........560
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Query Sequence  KRIKLFKPDYIFVGMGFPKQEEWIMTHENQFESTVMMGVGGSLE
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Template Sequence  REXLAADPDYVWCGNTISSCSLLGRAXAKVGLDAFLLTNVWGFD
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   234.....240.........250.........260.........270.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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