Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank52Aligned Residues362
% Identity15%Templatec4r2fA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:extracellular solute-binding protein family 1; PDBTitle: crystal structure of sugar transporter achl_0255 from arthrobacter2 chlorophenolicus a6, target efi-510633, with bound laminaribiose
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10... ......20.........30... ......40.........50.........60.
Predicted Secondary structure 
...






.








Query SS confidence 







. . .



















.



























Query Sequence  GKLVIWIN. . . GDKGYNGLAEVGKKFEKDTG. IKVTVEHPDKLEEKFPQVAATGDGPDII
Query Conservation 
 
 

  ...       
      


  
.


     

   

  
  

  


 
Alig confidence 







...



















.



























Template Conservation 


 

                   
      
 
           
     

  


 
Template Sequence  GAIKFWDMPWATPAYNDAAKKIAEGFSGANSKATYQIIQWNNFYQTFSSAIASKTGPAVS
Template Known Secondary structure 




SST


TT



STTTT


S
Template Predicted Secondary structure 

















Template SS confidence 



























































   55....60.........70.........80.........90.........100.........110....
 
   62.......70.........80.. .......90.........100.........110.....
Predicted Secondary structure 









......




Query SS confidence 




















. . . . . .
































Query Sequence  FWAHDRFGGYAQSGLLAEITP. . . . . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALS
Query Conservation               
 
 

  ......     
            


 



       
Alig confidence 




















......
































Template Conservation               
 
  
                           
  
 

       
Template Sequence  TGGGFQAFQFEEQGQIAYADKVIEKLKSNGQFDDFLPGVVEPFKTSKGYVAVPWQLDIRP
Template Known Secondary structure 


SSTT


S
GGGB
TTSSGGGTT



Template Predicted Secondary structure 

















Template SS confidence 



























































   115....120.........130.........140.........150.........160.........170....
 
   116...120.... .....130.........140.........150..... ....160......
Predicted Secondary structure  ....











.....
Query SS confidence 








. . . .






























. . . . .










Query Sequence  LIYNKDLLP. . . . NPPKTWEEIPALDKELKAKGKSALMFNLQEP. . . . . YFTWPLIAADG
Query Conservation 
 





 ....


 




   




  
           .....      
   
Alig confidence 








....






























.....










Template Conservation    


      
   
 



       
                              
Template Sequence  LWYRKSLFEKAGVGVPTDWASLLEAGKKLKGVGAVGFATGSGAGNNIGNHLMIMMMLNNG
Template Known Secondary structure  T



SBTT
BSSB


STT

TT
Template Predicted Secondary structure 






















Template SS confidence 



























































   175....180.........190.........200.........210.........220.........230....
 
   167..170.........180.........190.........200........ .210.........220...
Predicted Secondary structure 























...




Query SS confidence 









































. . .














Query Sequence  GYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . . TDYSIAEAAFNKGET
Query Conservation 
       
  
     
 

   


     
   
     ...         
  

 
Alig confidence 







......



























...














Template Conservation         
......           
      
                     
  
  
Template Sequence  GGVFTKDG. . . . . . ELDVLNDRNVEAVEFLLELVSNGVIDPAAVSYTTDNLNAQWKDSKA
Template Known Secondary structure 

SB
TTS......
B
TT
TTSS
TTGGG

TT
B
Template Predicted Secondary structure 





......
















Template SS confidence 



























































   235....240.. .......250.........260.........270.........280........
 
   224.....230.........240.........250.........260.........270.........280...
Predicted Secondary structure 






















Query SS confidence 



























































Query Sequence  AMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLEN
Query Conservation 

 
 
 
            


 

   
       
     
 
 






  

  
Alig confidence 


























































.
Template Conservation 
                                          
   
   
 
  

 .
Template Sequence  AYGMLTLGVPERVGDTSGDIVVASPIAGPHGDKAALIFPNNIMMYTNTPSQEASEEFVV.
Template Known Secondary structure 


TTT

SS



B
TTS


S

S
.
Template Predicted Secondary structure 






























.
Template SS confidence 



























































   289290.........300.........310.........320.........330.........340.......
 
   284.....290.........300.........310..... ....320.........330......
Predicted Secondary structure 














..











.....
Query SS confidence 































. .




















. . . . .
Query Sequence  YLLTDEGLEAVNKDKPLGAVALKSYEEELAKD. . PRIAATMENAQKGEIMPNIPQ. . . . .
Query Conservation   
 
 
            
    
       
..
      
    
   
 

 .....
Alig confidence 































..




















.....
Template Conservation   
 
 
         
  
                                         
Template Sequence  YYLGKLKELWQQKLMNALPVFKSITEMPEFTADPNNVKIVNEYVPIAKTFASQGTALSAN
Template Known Secondary structure  TTT

SSSBT
TSTGGG
TTTT

S

Template Predicted Secondary structure 






















Template SS confidence 



























































   348.350.........360.........370.........380.........390.........400.......
 
   337..340.........350.........360.........370....
Predicted Secondary structure  ..









Query SS confidence  . .





































Query Sequence  . . MSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAKVD
Query Conservation  ..   
   
  

  
  
  
 



  

  
 
 
 
Alig confidence  ..





































Template Conservation                     
      

          

Template Sequence  LAALDGGQALNQFTQTVLTGKTDAKSALTAFDTGLKSVLK
Template Known Secondary structure  STT
S
S
Template Predicted Secondary structure 







Template SS confidence 







































   408.410.........420.........430.........440.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D