Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence100.00%DateSun Sep 7 16:46:09 BST 2014
Rank70Aligned Residues360
% Identity19%Templatec2i58B_
PDB info PDB header:sugar binding proteinChain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.. .......40.........50.........60....
Predicted Secondary structure 






.










Query SS confidence 


























.































Query Sequence  GKLVIWINGDKGYNGLAEVGKKFEKDT. GIKVTVEHPDKLEEKFPQVAATGDGPDIIFWA
Query Conservation 
 
 

         
      


  .



     

   

  
  

  


    
Alig confidence 


























.































Template Conservation 


                
  
 
  
 
 
           
     

  


    
Template Sequence  VTIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLAGDVPDVVNIY
Template Known Secondary structure 


GGGTT
TT

SSTT


S

Template Predicted Secondary structure 












Template SS confidence 



























































   6...10.........20.........30.........40.........50.........60.....
 
   65. ...70.........80.........90.........100.........110.........120..
Predicted Secondary structure 

..











Query SS confidence 

. .























































Query Sequence  HD. . RFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL
Query Conservation    ..        
 
 

       
            


 



       
 




Alig confidence 

..

















.




































Template Conservation              
 
  
    .                
     
              
Template Sequence  PQSIELQEWAKAGVFEDLSNKD. YLKRVKNGYAEKYAVNEKVYNVPFTANAYGIYYNKDK
Template Known Secondary structure  TTSTT
B


TT
S.GGGGBGGGT
BTTB


BB

Template Predicted Secondary structure 









.















Template SS confidence 



























































   66...70.........80....... ..90.........100.........110.........120....
 
   123. .....130.........140.........150..... ....160.........170. .
Predicted Secondary structure  ....











.....


.
Query SS confidence 

. . . .






























. . . . .















.
Query Sequence  LP. . . . NPPKTWEEIPALDKELKAKGKSALMFNLQEP. . . . . YFTWPLIAADGGYAFK. Y
Query Conservation 
 ....


 




   




  
           .....      
   

    . 
Alig confidence 

....






























.....















.
Template Conservation                       
                                      
Template Sequence  FEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQ
Template Known Secondary structure  T




BTTT


B


TT
GGGGTSS
Template Predicted Secondary structure 




































Template SS confidence 



























































   125....130.........140.........150.........160.........170.........180....
 
   173......180.........190.........200........ .210.........220.........
Predicted Secondary structure 




















...





Query SS confidence 



































. . .




















Query Sequence  ENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD. . . TDYSIAEAAFNKGETAMTING
Query Conservation    
  
     
 

   


     
   
     ...         
  

 

 
 
Alig confidence 



































...




















Template Conservation                      
     
                     
  
  
     
Template Sequence  YLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMTPNG
Template Known Secondary structure  TSS
TT


TT
TTSSSTT
B
TTGGG

TSSS
Template Predicted Secondary structure 



























Template SS confidence 



























































   185....190.........200.........210.........220.........230.........240....
 
   230......... 240.........250.. .......260.........270.........280......
Predicted Secondary structure 


..







.











Query SS confidence 









. .












.

































Query Sequence  PWAWSNIDTS. . KVNYGVTVLPTFK. GQPSKPFVGVLSAGINAASPNKELAKEFLENYLL
Query Conservation   
        ..    


 

   .
       
     
 
 






  

   
 
Alig confidence 









..












.





























.


Template Conservation                       
                  
   
   
 
  

 . 
 
Template Sequence  SWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVE. YMT
Template Known Secondary structure  GGGT

SS

B
BSSTT

B
BSSBSS
S
.T
Template Predicted Secondary structure 


























.
Template SS confidence 



























































   245....250.........260.........270.........280.........290.........300 ...
 
   287..290.........300.........310.........320.........330.. .......340.....
Predicted Secondary structure 





















.



Query SS confidence 













































.












Query Sequence  TDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMP. NIPQMSAFWYAVR
Query Conservation 
 
            
    
       

      
    
   
. 

    
   
 
Alig confidence 




















..






















.












Template Conservation 
 
         
  
     ..                                     
Template Sequence  RPEVMQKYYDVDGSPTAIEGV. . KQAGEDSPLAGMTEYAFTDRHLVWLQQYWTSEADFHT
Template Known Secondary structure  S


B
BTT
..



TTSTTTTTTTTTTSTT
GGGSSS

Template Predicted Secondary structure 










..

















Template SS confidence 



























































   304.....310.........320.... .....330.........340.........350.........360.
 
   346...350.........360.........370.
Predicted Secondary structure 








Query SS confidence 

























Query Sequence  TAVINAASGRQTVDAALAAAQTNAAA
Query Conservation   

  
  
  
 



  

  
 
Alig confidence 








..














Template Conservation          
..
    
       
 
Template Sequence  LTMNYVLTG. . DKQGMVNDLNAFFNP
Template Known Secondary structure 
..
Template Predicted Secondary structure 

..
Template SS confidence 

























   362.......370 .........380.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D