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Job Descriptionmulti-dom
Confidence99.00%DateSun Sep 7 16:46:09 BST 2014
Rank117Aligned Residues218
% Identity11%Templatec3kn3C_
PDB info PDB header:transcriptionChain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60... ......70.........
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Query Sequence  LAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW. AHDRFGGYAQSGLLAE
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Template Sequence  LDVLAPAYKKDTGVDLKWVAVGTG. . NALKLGENCD. VDVVFVHAPKVELEYVEKGFGI.
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   18.20.........30.........40. ........50. ........60.........70...
 
   80.........90.........100.........110.........120.........130.........
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Query Sequence  ITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . DRTPVXYNDFVIIGNPSFKQKF. . TGXSVAEAFKL
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GGGTTTT..TT

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   74.....80.........90..... ....100......
 
   140.........150.........160.........170.........180.........190.........
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Query Sequence  LKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDL
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Template Sequence  IEKEQVKFVSRGDKSGTHSKEREVWKEALGKIPEKESWY. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT



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   107..110.........120.........130.........140.....
 
   200.........210.........220.........230.........240.........250.........
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Query Sequence  IKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPF
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Template Sequence  . . . . . IEAGQGXLATINIAEEQKGLTLTDRGTFIKYESNHKGKPPXVIVLEGDNTLKNFY
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   146...150.........160.........170.........180.........190.........200
 
   260.........270.........280.........290......
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Query Sequence  VGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNK
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Template Sequence  SIXAVNPKRCEKADYKGAKQFID. WIVSEKXQAEIAN
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   201........210.........220... ......230......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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