Return to main results Retrieve Phyre Job Id

Job Descriptionmulti-dom
Confidence49.34%DateSun Sep 7 16:46:09 BST 2014
Rank236Aligned Residues194
% Identity10%Templatec4kv7A_
PDB info PDB header:unknown functionChain: A: PDB Molecule:probable leucine/isoleucine/valine-binding protein; PDBTitle: the crystal structure of a possible leucine/isoleucine/valine-binding2 protein from rhodopirellula baltica sh 1
Resolution1.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380. ........390.........400.........410.
Predicted Secondary structure 










......









Query SS confidence 























. . . . . .





























Query Sequence  VDAALAAAQTNAAAKVDILGVDFD. . . . . . NTTMLQMVENIKTFFANQSTNNLFIVTANP
Query Conservation   



  

  
 
 
 


   
......  
                     
   
 
Alig confidence 























......





























Template Conservation     
  

   

  


 
  



  
   
   
      

    
  
 
   
 
Template Sequence  XRHGILAAFDEAKAKNHLPSKTLKLIALDDGYEPARTAPNXHRLTDEHEVLAVVGNVGTP
Template Known Secondary structure  TTSSTT
TT
TTT

S


B
Template Predicted Secondary structure 


















Template SS confidence 



























































   70.........80.........90.........100.........110.........120.........
 
   412.......420.........430.........440.........450.........460.........470.
Predicted Secondary structure 

















Query SS confidence 



























































Query Sequence  EIVNYATTHQAYLELINQASYIVADGTGVVKASHRLKQPLAHRIPGIELMDECLKIAHVN
Query Conservation                    
     

  
             

 
 

   
       
Alig confidence 

.......


















































Template Conservation    .......            
 
                                    
Template Sequence  TA. . . . . . . ITAIPIAQQTKTPFFGAFTGASALRKVEFVINYRASYAEETAAXVDALVAK
Template Known Secondary structure  .......TT

S
B


GGG


TTB
S

T
Template Predicted Secondary structure  .......
















Template SS confidence 



























































   130. ........140.........150.........160.........170.........180..
 
   472. ......480.........490........ .500.........510.........
Predicted Secondary structure 

...






.........








Query SS confidence 

. . .
























. . . . . . . . .




















Query Sequence  HQ. . . KVFLLGATNEVVEAAQYALQQRYPN. . . . . . . . . ISFAHHHGYIDLEDETVVKRI
Query Conservation    ...    

            
    
 .........       
            
Alig confidence 

...
























.........




















Template Conservation        



      
              
  
                      
  
Template Sequence  GIKPEEIGFFTQNDSYGDDGFFGGLAAIRRHQSVKVSSLPHGRYRRNTSQVEDGLADLLX
Template Known Secondary structure  T

GGGSSS


GGGS

TT



T
Template Predicted Secondary structure 

















Template SS confidence 



























































   186...190.........200.........210.........220.........230.........240.....
 
   520.........530.........540.........550........
Predicted Secondary structure 













Query SS confidence 






































Query Sequence  KLFKPDYIFVGMGFPKQEEWIMTHENQFESTVMMGVGGS
Query Conservation           
  
 
 

         
       

  
Alig confidence 






































Template Conservation         
                               
Template Sequence  HQPLPKAVIXVGTYEPCSKLIRXARXNNFNPQFLAVSFV
Template Known Secondary structure 
SS

SS
TT



GGG
Template Predicted Secondary structure 















Template SS confidence 






































   246...250.........260.........270.........280....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D